Wall clock time and date at job start Wed Apr 1 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47246 * 2 1 4 4 H 1.09000 * 109.47237 * 306.60777 * 3 2 1 5 5 C 1.50701 * 109.47009 * 186.60850 * 3 2 1 6 6 H 1.07998 * 119.99416 * 243.88626 * 5 3 2 7 7 C 1.37870 * 120.00094 * 63.88231 * 5 3 2 8 8 N 1.31519 * 119.99926 * 193.74670 * 7 5 3 9 9 Si 1.86804 * 120.00254 * 13.75106 * 7 5 3 10 10 H 1.48500 * 109.47167 * 93.04136 * 9 7 5 11 11 H 1.48497 * 109.47039 * 213.04400 * 9 7 5 12 12 H 1.48502 * 109.46609 * 333.04451 * 9 7 5 13 13 N 1.46903 * 109.46834 * 66.60730 * 3 2 1 14 14 C 1.46900 * 110.99819 * 261.74312 * 13 3 2 15 15 C 1.53042 * 109.46032 * 157.26724 * 14 13 3 16 16 C 1.53188 * 109.31220 * 181.37088 * 15 14 13 17 17 N 1.46926 * 108.77875 * 305.36497 * 16 15 14 18 18 C 1.34775 * 120.63082 * 233.58929 * 17 16 15 19 19 O 1.21554 * 120.00265 * 5.34951 * 18 17 16 20 20 C 1.47820 * 119.99845 * 185.35515 * 18 17 16 21 21 C 1.39311 * 120.20659 * 51.38041 * 20 18 17 22 22 C 1.38114 * 119.99629 * 180.27181 * 21 20 18 23 23 C 1.38447 * 120.42956 * 359.49451 * 22 21 20 24 24 C 1.38109 * 120.42583 * 0.50844 * 23 22 21 25 25 C 1.39360 * 119.98565 * 359.74805 * 24 23 22 26 26 C 1.43200 * 120.20674 * 180.02562 * 25 24 23 27 27 N 9.66489 * 82.40676 * 27.64189 * 2 1 3 28 28 C 1.46928 * 118.73560 * 53.86007 * 17 16 15 29 29 C 1.53046 * 109.44978 * 277.32808 * 14 13 3 30 30 H 1.08998 * 109.47393 * 301.91449 * 1 2 3 31 31 H 1.09000 * 109.47193 * 61.90973 * 1 2 3 32 32 H 1.09005 * 109.47192 * 181.91379 * 1 2 3 33 33 H 1.08998 * 109.47208 * 239.99597 * 2 1 3 34 34 H 1.09006 * 109.47239 * 119.99958 * 2 1 3 35 35 H 0.96997 * 119.99525 * 180.02562 * 8 7 5 36 36 H 1.00892 * 111.00474 * 25.69977 * 13 3 2 37 37 H 1.08999 * 109.45977 * 37.29275 * 14 13 3 38 38 H 1.08996 * 109.49447 * 61.41957 * 15 14 13 39 39 H 1.08998 * 109.49448 * 301.32398 * 15 14 13 40 40 H 1.09001 * 109.58581 * 185.57825 * 16 15 14 41 41 H 1.09000 * 109.58818 * 65.15255 * 16 15 14 42 42 H 1.07996 * 120.00340 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.78781 * 179.72767 * 22 21 20 44 44 H 1.08002 * 119.78388 * 180.27603 * 23 22 21 45 45 H 1.07999 * 120.00433 * 179.76743 * 24 23 22 46 46 H 1.08994 * 109.58742 * 65.93181 * 28 17 16 47 47 H 1.09006 * 109.58576 * 186.35233 * 28 17 16 48 48 H 1.09002 * 109.49892 * 298.57554 * 29 14 13 49 49 H 1.09000 * 109.49476 * 58.67190 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5834 1.9894 -0.8249 5 6 3.5381 1.4456 -0.1635 6 1 4.1668 1.8259 0.6280 7 6 4.1060 0.9629 -1.3234 8 7 5.3961 0.7115 -1.3688 9 14 3.0430 0.6661 -2.8306 10 1 3.0613 1.8736 -3.6948 11 1 3.5740 -0.4943 -3.5900 12 1 1.6487 0.3831 -2.4049 13 7 1.6848 2.0874 1.2712 14 6 0.4695 2.9002 1.1276 15 6 -0.1860 3.0838 2.4983 16 6 -1.4709 3.9026 2.3398 17 7 -1.1485 5.1602 1.6518 18 6 -1.4996 6.3458 2.1879 19 8 -2.0011 6.3879 3.2944 20 6 -1.2749 7.5951 1.4303 21 6 -1.7313 7.7114 0.1193 22 6 -1.5141 8.8786 -0.5865 23 6 -0.8531 9.9422 0.0038 24 6 -0.3931 9.8460 1.3025 25 6 -0.5981 8.6745 2.0290 26 6 -0.1236 8.5699 3.3761 27 7 0.2529 8.4867 4.4446 28 6 -0.4414 5.1004 0.3652 29 6 0.8370 4.2684 0.5486 30 1 -0.3634 0.5433 0.8723 31 1 -0.3633 0.4839 -0.9066 32 1 -0.3634 -1.0271 0.0343 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.7956 0.3723 -2.1850 36 1 1.5781 1.4043 2.0059 37 1 -0.2266 2.3970 0.4566 38 1 0.5005 3.6089 3.1624 39 1 -0.4261 2.1079 2.9203 40 1 -1.8889 4.1206 3.3226 41 1 -2.1934 3.3384 1.7501 42 1 -2.2515 6.8875 -0.3466 43 1 -1.8655 8.9635 -1.6041 44 1 -0.6928 10.8517 -0.5562 45 1 0.1250 10.6786 1.7550 46 1 -1.0816 4.6318 -0.3821 47 1 -0.1798 6.1089 0.0448 48 1 1.5138 4.7824 1.2310 49 1 1.3248 4.1356 -0.4171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255160292.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:50 Heat of formation + Delta-G solvation = 6.550972 kcal Electronic energy + Delta-G solvation = -29987.630356 eV Core-core repulsion = 26106.835178 eV Total energy + Delta-G solvation = -3880.795178 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.79219 -40.03053 -39.10619 -37.65144 -37.34588 -34.76649 -33.74599 -32.78822 -32.41726 -31.66537 -30.91879 -28.90401 -26.18820 -24.98130 -24.42616 -24.26282 -23.62687 -21.84042 -21.55605 -20.66283 -19.48972 -18.83268 -18.36069 -17.42712 -16.95080 -16.83289 -16.39435 -16.15778 -15.86845 -15.64064 -15.42186 -15.13071 -14.97512 -14.84592 -14.77647 -14.59356 -14.28557 -14.20324 -14.03508 -13.95998 -13.62005 -13.48027 -13.27152 -13.06285 -12.82381 -12.75197 -12.54838 -12.41500 -12.32066 -12.29959 -12.16341 -11.88856 -11.63818 -11.43797 -11.23367 -11.07770 -11.04605 -10.50275 -10.01974 -9.98280 -9.75335 -8.89970 -8.21849 -6.19864 -0.42383 0.13584 1.38522 1.40770 1.44896 1.50666 1.54003 1.87424 1.90688 2.41066 2.77033 2.82539 3.11621 3.26649 3.45323 3.81049 3.86335 3.87527 4.07579 4.13104 4.23925 4.33191 4.34971 4.36756 4.38232 4.42472 4.49391 4.54266 4.59942 4.65043 4.71503 4.76855 4.82859 4.88711 4.93144 5.01567 5.11999 5.15347 5.18096 5.25580 5.28830 5.30719 5.42901 5.44260 5.47700 5.57887 5.78871 5.81722 6.14699 6.23322 6.34625 6.80823 6.84251 6.86946 6.93235 7.44134 8.96121 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013396 B = 0.003027 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.651526 B = 9248.901671 C = 9885.625879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.153 4.153 3 C 0.205 3.795 4 H 0.032 0.968 5 C -0.504 4.504 6 H 0.023 0.977 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.929 3.071 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.217 1.217 13 N -0.688 5.688 14 C 0.087 3.913 15 C -0.126 4.126 16 C 0.117 3.883 17 N -0.597 5.597 18 C 0.547 3.453 19 O -0.577 6.577 20 C -0.099 4.099 21 C -0.087 4.087 22 C -0.077 4.077 23 C -0.089 4.089 24 C -0.069 4.069 25 C -0.015 4.015 26 C 0.262 3.738 27 N -0.460 5.460 28 C 0.108 3.892 29 C -0.122 4.122 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.262 0.738 36 H 0.333 0.667 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.159 0.841 43 H 0.177 0.823 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.043 0.957 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.570 16.064 -5.230 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.192 4.192 3 C 0.095 3.905 4 H 0.050 0.950 5 C -0.543 4.543 6 H 0.041 0.959 7 C -0.188 4.188 8 N -0.594 5.594 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.221 1.221 12 H -0.139 1.139 13 N -0.318 5.318 14 C -0.022 4.022 15 C -0.165 4.165 16 C -0.005 4.005 17 N -0.328 5.328 18 C 0.337 3.663 19 O -0.457 6.457 20 C -0.105 4.105 21 C -0.105 4.105 22 C -0.095 4.095 23 C -0.106 4.106 24 C -0.090 4.090 25 C -0.019 4.019 26 C -0.052 4.052 27 N -0.136 5.136 28 C -0.014 4.014 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.177 0.823 43 H 0.194 0.806 44 H 0.194 0.806 45 H 0.173 0.827 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.062 0.938 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.681 16.387 -3.172 26.576 hybrid contribution 0.175 -1.285 -0.345 1.342 sum -20.507 15.102 -3.517 25.709 Atomic orbital electron populations 1.21883 0.94722 1.01953 1.01807 1.22536 0.96140 0.99728 1.00812 1.19305 0.92947 0.89700 0.88501 0.95019 1.21327 0.92223 1.39271 1.01471 0.95890 1.25849 0.95988 0.94773 1.02190 1.70145 1.13846 1.46829 1.28558 0.86175 0.81919 0.77614 0.78976 1.20079 1.22079 1.13944 1.60444 1.35136 1.28522 1.07720 1.21629 0.90524 0.94060 0.96036 1.22000 0.96548 1.00900 0.97013 1.21657 0.96703 0.83417 0.98743 1.48163 1.56083 1.05376 1.23164 1.18845 0.77849 0.84515 0.85139 1.90796 1.46435 1.87323 1.21158 1.19824 1.01979 0.92349 0.96348 1.21577 0.98121 1.00561 0.90239 1.21868 0.94996 0.91039 1.01646 1.21777 0.94939 1.00691 0.93222 1.21482 0.97674 0.94734 0.95069 1.16107 1.03097 0.96918 0.85789 1.26223 0.92668 0.92849 0.93472 1.81190 1.10840 1.08394 1.13158 1.22253 0.92640 1.02591 0.83924 1.21973 0.97075 0.95589 1.01460 0.91785 0.92701 0.92151 0.93660 0.93443 0.92932 0.84870 0.92129 0.93551 0.89304 0.90349 0.88228 0.82316 0.80565 0.80631 0.82726 0.87670 0.87596 0.93835 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 8.82 71.98 0.63 -3.41 16 2 C -0.15 -5.80 4.48 30.59 0.14 -5.66 16 3 C 0.20 8.70 1.51 44.17 0.07 8.76 16 4 H 0.03 1.32 5.76 -2.39 -0.01 1.31 16 5 C -0.50 -28.24 9.30 25.60 0.24 -28.00 16 6 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 7 C 0.01 0.47 5.34 84.65 0.45 0.92 16 8 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 9 Si 0.93 41.35 25.73 68.60 1.77 43.11 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.22 -8.33 5.37 99.48 0.53 -7.79 16 13 N -0.69 -25.68 5.89 -473.15 -2.79 -28.46 16 14 C 0.09 2.45 1.46 44.94 0.07 2.52 16 15 C -0.13 -3.16 5.38 30.67 0.17 -2.99 16 16 C 0.12 2.57 6.44 86.36 0.56 3.13 16 17 N -0.60 -13.32 2.97 -821.51 -2.44 -15.75 16 18 C 0.55 14.23 6.67 86.78 0.58 14.81 16 19 O -0.58 -19.94 15.59 -3.89 -0.06 -20.00 16 20 C -0.10 -1.89 4.75 -19.86 -0.09 -1.98 16 21 C -0.09 -0.85 7.63 22.50 0.17 -0.67 16 22 C -0.08 -0.32 10.03 22.29 0.22 -0.09 16 23 C -0.09 -0.39 10.03 22.29 0.22 -0.17 16 24 C -0.07 -0.75 9.74 22.51 0.22 -0.53 16 25 C -0.01 -0.30 5.76 -21.14 -0.12 -0.42 16 26 C 0.26 7.55 13.78 88.33 1.22 8.76 16 27 N -0.46 -16.01 18.54 19.00 0.35 -15.65 16 28 C 0.11 1.98 5.45 86.51 0.47 2.45 16 29 C -0.12 -3.37 5.56 30.82 0.17 -3.20 16 30 H 0.06 1.56 6.21 -2.39 -0.01 1.54 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.04 1.85 4.74 -2.39 -0.01 1.84 16 34 H 0.05 1.85 7.99 -2.38 -0.02 1.83 16 35 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.33 11.87 7.82 -89.70 -0.70 11.16 16 37 H 0.06 1.53 5.83 -2.39 -0.01 1.52 16 38 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.09 1.94 8.10 -2.39 -0.02 1.92 16 40 H 0.08 1.99 7.00 -2.39 -0.02 1.97 16 41 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.16 0.91 7.54 -2.91 -0.02 0.89 16 43 H 0.18 -0.50 8.06 -2.91 -0.02 -0.53 16 44 H 0.18 -0.42 8.06 -2.91 -0.02 -0.45 16 45 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 46 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.11 1.60 5.23 -2.38 -0.01 1.59 16 48 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.07 2.14 7.46 -2.39 -0.02 2.12 16 Total: -1.00 -83.45 387.44 2.61 -80.84 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.11 Total: 20.92 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 5.38 Total: -5.78 kcal Atomic # 7 Polarization: -114.52 SS G_CDS: -4.57 Total: -119.09 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.77 Total: 43.11 kcal Total: -83.45 2.61 -80.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255160292.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.387 kcal (2) G-P(sol) polarization free energy of solvation -83.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds