Wall clock time and date at job start Wed Apr 1 2020 00:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99341 * 240.44049 * 3 2 1 5 5 C 1.37607 * 120.00245 * 179.72255 * 4 3 2 6 6 C 1.39738 * 119.99595 * 0.55923 * 5 4 3 7 7 C 1.47685 * 120.00450 * 179.70007 * 6 5 4 8 8 O 1.21575 * 120.00265 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00145 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00189 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47112 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47204 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47099 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00053 * 294.30131 * 13 12 11 15 15 C 1.53241 * 109.34012 * 172.74626 * 14 13 12 16 16 N 1.47074 * 108.52019 * 53.83062 * 15 14 13 17 17 C 1.36933 * 120.88337 * 128.83962 * 16 15 14 18 18 H 1.08003 * 120.00339 * 206.56779 * 17 16 15 19 19 C 1.38809 * 120.00090 * 26.55982 * 17 16 15 20 20 N 1.31622 * 119.99871 * 17.02205 * 19 17 16 21 21 Si 1.86801 * 120.00478 * 197.02155 * 19 17 16 22 22 H 1.48494 * 109.47137 * 89.99843 * 21 19 17 23 23 H 1.48497 * 109.47027 * 210.00302 * 21 19 17 24 24 H 1.48498 * 109.46934 * 329.99923 * 21 19 17 25 25 C 1.47088 * 118.23854 * 308.81600 * 16 15 14 26 26 C 1.46897 * 110.99883 * 169.99703 * 13 12 11 27 27 C 1.39746 * 119.99367 * 359.71765 * 6 5 4 28 28 C 1.37595 * 119.99562 * 359.97438 * 27 6 5 29 29 H 4.51941 * 14.06382 * 359.97438 * 4 2 1 30 30 H 1.08004 * 120.00091 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.99802 * 180.25665 * 5 4 3 32 32 H 0.97003 * 119.99591 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47596 * 300.00349 * 10 9 7 34 34 H 1.09000 * 109.47097 * 60.00238 * 10 9 7 35 35 H 1.08998 * 109.47195 * 300.00010 * 11 10 9 36 36 H 1.09000 * 109.47078 * 60.00064 * 11 10 9 37 37 H 1.08998 * 109.47081 * 300.00115 * 12 11 10 38 38 H 1.09000 * 109.47021 * 60.00065 * 12 11 10 39 39 H 1.08994 * 109.49424 * 292.70605 * 14 13 12 40 40 H 1.09007 * 109.49354 * 52.78942 * 14 13 12 41 41 H 1.08999 * 109.62830 * 294.12289 * 15 14 13 42 42 H 1.08997 * 109.63183 * 173.54262 * 15 14 13 43 43 H 0.97002 * 120.00568 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.62786 * 291.47615 * 25 16 15 45 45 H 1.08992 * 109.78723 * 170.98745 * 25 16 15 46 46 H 1.08997 * 109.49593 * 307.21740 * 26 13 12 47 47 H 1.09007 * 109.49079 * 67.29863 * 26 13 12 48 48 H 1.08002 * 120.00344 * 179.97438 * 27 6 5 49 49 H 1.07998 * 119.99870 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3041 0.5979 1.0525 5 6 4.6801 0.5936 1.0556 6 6 5.3792 0.0021 0.0001 7 6 6.8561 0.0033 -0.0001 8 8 7.4643 -0.5109 -0.9187 9 7 7.5297 0.5743 1.0180 10 6 8.9946 0.5759 1.0176 11 6 9.5042 1.2808 2.2763 12 6 11.0343 1.2819 2.2762 13 7 11.5236 1.9593 3.4844 14 6 11.1659 3.3839 3.4707 15 6 11.5313 4.0119 4.8199 16 7 12.9474 3.7289 5.0988 17 6 13.8103 4.7344 5.4444 18 1 14.8653 4.6362 5.2355 19 6 13.3290 5.8800 6.0631 20 7 12.1353 5.8764 6.6177 21 14 14.3752 7.4268 6.1085 22 1 14.0883 8.2539 4.9091 23 1 14.0570 8.2038 7.3334 24 1 15.8122 7.0523 6.1194 25 6 13.4120 2.3371 4.9971 26 6 12.9725 1.7751 3.6410 27 6 4.6808 -0.5901 -1.0555 28 6 3.3048 -0.5913 -1.0551 29 1 -1.0500 0.0001 -0.0008 30 1 2.7638 1.0594 1.8659 31 1 5.2197 1.0517 1.8713 32 1 7.0444 0.9843 1.7511 33 1 9.3592 -0.4512 1.0040 34 1 9.3571 1.1018 0.1343 35 1 9.1398 2.3079 2.2903 36 1 9.1418 0.7546 3.1594 37 1 11.3984 0.2547 2.2623 38 1 11.3971 1.8079 1.3931 39 1 11.7130 3.8886 2.6746 40 1 10.0945 3.4883 3.2992 41 1 10.9102 3.5804 5.6049 42 1 11.3749 5.0897 4.7765 43 1 11.7991 6.6768 7.0504 44 1 12.9717 1.7445 5.7990 45 1 14.4989 2.3045 5.0721 46 1 13.2115 0.7127 3.5928 47 1 13.4946 2.3023 2.8423 48 1 5.2209 -1.0470 -1.8716 49 1 2.7650 -1.0486 -1.8711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265247121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:10 Heat of formation + Delta-G solvation = 73.608252 kcal Electronic energy + Delta-G solvation = -27680.094851 eV Core-core repulsion = 23802.207495 eV Total energy + Delta-G solvation = -3877.887357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.56688 -38.90211 -38.24300 -35.88283 -34.49296 -34.25027 -32.26682 -31.49248 -31.04082 -30.15119 -29.93221 -26.99691 -25.28201 -24.02483 -23.11439 -22.80786 -22.35027 -21.28865 -20.66946 -19.47038 -19.10030 -18.17584 -16.86894 -16.52035 -16.10278 -15.95442 -15.47759 -15.17043 -14.98944 -14.79976 -14.45108 -14.14762 -14.12731 -13.82514 -13.70346 -13.53937 -13.42561 -13.02673 -12.96010 -12.69239 -12.17699 -11.93467 -11.80755 -11.59375 -11.57714 -11.32602 -11.05460 -10.96509 -10.89349 -10.74930 -10.41964 -10.29938 -10.23312 -10.03776 -9.74011 -9.59401 -9.55162 -9.38087 -9.01649 -8.51336 -7.83632 -6.67253 -5.78742 -3.19750 0.05564 0.86520 2.10683 2.21979 2.83848 2.91457 3.37283 3.44248 3.45395 3.54933 3.70123 4.26395 4.32994 4.33770 4.44764 4.49889 4.77947 4.90215 4.97431 5.01172 5.05428 5.16629 5.37715 5.38485 5.44008 5.47887 5.48685 5.60216 5.70402 5.77913 5.84768 5.89030 5.89491 5.94004 6.02688 6.12048 6.15723 6.21079 6.24503 6.31046 6.34817 6.54339 6.68980 6.92988 6.99390 7.19086 7.24524 7.59728 7.63515 7.70178 7.81621 7.90106 8.43007 9.20969 9.84323 10.42801 11.30085 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.001658 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.928883 B =16884.806788 C =18078.567531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.157 4.157 3 C 0.033 3.967 4 C -0.102 4.102 5 C -0.084 4.084 6 C -0.125 4.125 7 C 0.556 3.444 8 O -0.537 6.537 9 N -0.722 5.722 10 C 0.120 3.880 11 C -0.129 4.129 12 C 0.059 3.941 13 N -0.533 5.533 14 C 0.033 3.967 15 C 0.178 3.822 16 N -0.595 5.595 17 C -0.252 4.252 18 H 0.066 0.934 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.148 3.852 26 C 0.045 3.955 27 C -0.058 4.058 28 C -0.104 4.104 29 H 0.226 0.774 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.024 0.976 40 H 0.062 0.938 41 H 0.026 0.974 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.027 0.973 48 H 0.143 0.857 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.001 -12.980 -13.447 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.157 4.157 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.128 4.128 7 C 0.343 3.657 8 O -0.415 6.415 9 N -0.374 5.374 10 C -0.003 4.003 11 C -0.167 4.167 12 C -0.070 4.070 13 N -0.258 5.258 14 C -0.096 4.096 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.022 3.978 26 C -0.085 4.085 27 C -0.077 4.077 28 C -0.122 4.122 29 H 0.243 0.757 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.237 0.763 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.046 0.954 48 H 0.160 0.840 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.786 -13.406 -13.578 27.487 hybrid contribution 0.395 1.448 -0.248 1.521 sum -19.390 -11.958 -13.825 26.648 Atomic orbital electron populations 1.24970 0.95822 0.98470 0.98743 1.20001 0.92019 1.01920 1.01800 1.16183 0.86764 0.98456 0.95343 1.21158 0.93780 0.99091 0.97991 1.21269 0.94144 0.97422 0.97381 1.20103 0.93086 1.02613 0.96999 1.18209 0.87011 0.78321 0.82170 1.90791 1.69824 1.45289 1.35550 1.45949 1.07976 1.59105 1.24356 1.21395 0.78414 1.01505 0.99008 1.21809 0.96623 1.01389 0.96871 1.21936 0.93700 0.99270 0.92143 1.61947 1.14405 1.13672 1.35764 1.22955 0.98753 0.86691 1.01246 1.20861 0.84406 0.99793 0.89756 1.44117 1.06553 1.01392 1.79813 1.19218 0.90809 0.95767 1.32318 0.91627 1.25016 0.97319 0.99778 0.97626 1.70030 1.18642 1.27857 1.38335 0.86281 0.79887 0.83510 0.77056 1.21531 1.21744 1.20464 1.20973 0.97107 0.86928 0.92821 1.22611 0.86937 0.99122 0.99797 1.21209 0.93393 0.95761 0.97346 1.21195 0.93757 0.99346 0.97935 0.75720 0.84737 0.84794 0.76281 0.91152 0.91316 0.90936 0.90301 0.91143 0.95288 0.95771 0.92001 0.95623 0.89425 0.93645 0.95684 0.92637 0.92014 0.95439 0.83966 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 19.25 29.55 0.57 -0.38 16 2 C -0.16 -1.23 13.23 -38.84 -0.51 -1.74 16 3 C 0.03 0.26 5.73 -106.87 -0.61 -0.35 16 4 C -0.10 -0.73 9.73 -39.26 -0.38 -1.11 16 5 C -0.08 -0.60 9.52 -39.25 -0.37 -0.97 16 6 C -0.12 -1.14 5.88 -104.92 -0.62 -1.76 16 7 C 0.56 6.22 7.77 -12.40 -0.10 6.12 16 8 O -0.54 -7.86 16.33 5.30 0.09 -7.78 16 9 N -0.72 -6.75 5.50 -61.30 -0.34 -7.09 16 10 C 0.12 1.23 5.67 -4.05 -0.02 1.21 16 11 C -0.13 -1.40 5.26 -26.73 -0.14 -1.54 16 12 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 13 N -0.53 -9.11 4.63 -234.32 -1.08 -10.19 16 14 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 15 C 0.18 4.24 5.42 -3.60 -0.02 4.22 16 16 N -0.60 -15.04 3.04 -172.02 -0.52 -15.56 16 17 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16 18 H 0.07 1.78 7.88 -52.48 -0.41 1.36 16 19 C 0.00 0.03 4.94 -17.43 -0.09 -0.06 16 20 N -0.90 -26.11 11.15 55.49 0.62 -25.49 16 21 Si 0.90 21.64 29.59 -169.99 -5.03 16.62 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.15 3.15 6.69 -3.60 -0.02 3.12 16 26 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 27 C -0.06 -0.50 9.57 -39.25 -0.38 -0.88 16 28 C -0.10 -0.79 9.73 -39.26 -0.38 -1.17 16 29 H 0.23 0.43 7.80 -54.09 -0.42 0.01 16 30 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.13 0.65 6.38 -52.49 -0.34 0.32 16 32 H 0.40 2.79 6.49 -40.82 -0.26 2.52 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 38 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 2.32 6.12 -51.93 -0.32 2.00 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 46 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 47 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 48 H 0.14 1.20 7.64 -52.49 -0.40 0.80 16 49 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -33.24 403.96 -10.87 -44.11 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.41 Total: -0.47 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.28 Total: -0.23 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: -1.33 Total: -58.33 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.78 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.24 -10.87 -44.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265247121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.718 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds