Wall clock time and date at job start Wed Apr 1 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39714 * 119.99341 * 240.44049 * 3 2 1 5 5 C 1.37607 * 120.00245 * 179.72255 * 4 3 2 6 6 C 1.39738 * 119.99595 * 0.55923 * 5 4 3 7 7 C 1.47685 * 120.00450 * 179.70007 * 6 5 4 8 8 O 1.21575 * 120.00265 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00145 * 0.02562 * 7 6 5 10 10 C 1.46493 * 120.00189 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47112 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.47204 * 179.97438 * 11 10 9 13 13 N 1.46905 * 109.47099 * 179.97438 * 12 11 10 14 14 C 1.46894 * 111.00053 * 294.30131 * 13 12 11 15 15 C 1.53241 * 109.34012 * 172.74626 * 14 13 12 16 16 N 1.47074 * 108.52019 * 53.83062 * 15 14 13 17 17 C 1.36933 * 120.88337 * 128.83962 * 16 15 14 18 18 H 1.08003 * 120.00339 * 206.56779 * 17 16 15 19 19 C 1.38809 * 120.00090 * 26.55982 * 17 16 15 20 20 N 1.31622 * 119.99871 * 17.02205 * 19 17 16 21 21 Si 1.86801 * 120.00478 * 197.02155 * 19 17 16 22 22 H 1.48494 * 109.47137 * 89.99843 * 21 19 17 23 23 H 1.48497 * 109.47027 * 210.00302 * 21 19 17 24 24 H 1.48498 * 109.46934 * 329.99923 * 21 19 17 25 25 C 1.47088 * 118.23854 * 308.81600 * 16 15 14 26 26 C 1.46897 * 110.99883 * 169.99703 * 13 12 11 27 27 C 1.39746 * 119.99367 * 359.71765 * 6 5 4 28 28 C 1.37595 * 119.99562 * 359.97438 * 27 6 5 29 29 H 4.51941 * 14.06382 * 359.97438 * 4 2 1 30 30 H 1.08004 * 120.00091 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.99802 * 180.25665 * 5 4 3 32 32 H 0.97003 * 119.99591 * 0.02562 * 9 7 6 33 33 H 1.09001 * 109.47596 * 300.00349 * 10 9 7 34 34 H 1.09000 * 109.47097 * 60.00238 * 10 9 7 35 35 H 1.08998 * 109.47195 * 300.00010 * 11 10 9 36 36 H 1.09000 * 109.47078 * 60.00064 * 11 10 9 37 37 H 1.08998 * 109.47081 * 300.00115 * 12 11 10 38 38 H 1.09000 * 109.47021 * 60.00065 * 12 11 10 39 39 H 1.08994 * 109.49424 * 292.70605 * 14 13 12 40 40 H 1.09007 * 109.49354 * 52.78942 * 14 13 12 41 41 H 1.08999 * 109.62830 * 294.12289 * 15 14 13 42 42 H 1.08997 * 109.63183 * 173.54262 * 15 14 13 43 43 H 0.97002 * 120.00568 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.62786 * 291.47615 * 25 16 15 45 45 H 1.08992 * 109.78723 * 170.98745 * 25 16 15 46 46 H 1.08997 * 109.49593 * 307.21740 * 26 13 12 47 47 H 1.09007 * 109.49079 * 67.29863 * 26 13 12 48 48 H 1.08002 * 120.00344 * 179.97438 * 27 6 5 49 49 H 1.07998 * 119.99870 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3041 0.5979 1.0525 5 6 4.6801 0.5936 1.0556 6 6 5.3792 0.0021 0.0001 7 6 6.8561 0.0033 -0.0001 8 8 7.4643 -0.5109 -0.9187 9 7 7.5297 0.5743 1.0180 10 6 8.9946 0.5759 1.0176 11 6 9.5042 1.2808 2.2763 12 6 11.0343 1.2819 2.2762 13 7 11.5236 1.9593 3.4844 14 6 11.1659 3.3839 3.4707 15 6 11.5313 4.0119 4.8199 16 7 12.9474 3.7289 5.0988 17 6 13.8103 4.7344 5.4444 18 1 14.8653 4.6362 5.2355 19 6 13.3290 5.8800 6.0631 20 7 12.1353 5.8764 6.6177 21 14 14.3752 7.4268 6.1085 22 1 14.0883 8.2539 4.9091 23 1 14.0570 8.2038 7.3334 24 1 15.8122 7.0523 6.1194 25 6 13.4120 2.3371 4.9971 26 6 12.9725 1.7751 3.6410 27 6 4.6808 -0.5901 -1.0555 28 6 3.3048 -0.5913 -1.0551 29 1 -1.0500 0.0001 -0.0008 30 1 2.7638 1.0594 1.8659 31 1 5.2197 1.0517 1.8713 32 1 7.0444 0.9843 1.7511 33 1 9.3592 -0.4512 1.0040 34 1 9.3571 1.1018 0.1343 35 1 9.1398 2.3079 2.2903 36 1 9.1418 0.7546 3.1594 37 1 11.3984 0.2547 2.2623 38 1 11.3971 1.8079 1.3931 39 1 11.7130 3.8886 2.6746 40 1 10.0945 3.4883 3.2992 41 1 10.9102 3.5804 5.6049 42 1 11.3749 5.0897 4.7765 43 1 11.7991 6.6768 7.0504 44 1 12.9717 1.7445 5.7990 45 1 14.4989 2.3045 5.0721 46 1 13.2115 0.7127 3.5928 47 1 13.4946 2.3023 2.8423 48 1 5.2209 -1.0470 -1.8716 49 1 2.7650 -1.0486 -1.8711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265247121.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:09 Heat of formation + Delta-G solvation = 52.983481 kcal Electronic energy + Delta-G solvation = -27680.989208 eV Core-core repulsion = 23802.207495 eV Total energy + Delta-G solvation = -3878.781714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.31157 -39.84112 -39.47312 -37.07079 -35.88042 -34.86236 -33.69281 -32.41260 -31.92221 -31.62100 -31.10473 -28.50780 -26.42023 -25.16177 -24.40745 -24.00044 -23.47559 -22.24994 -21.59608 -20.79768 -19.97044 -18.90855 -18.71622 -17.44064 -17.00648 -16.80923 -16.58060 -16.29658 -15.94927 -15.82832 -15.72952 -15.41107 -15.28134 -15.20096 -14.92666 -14.69771 -14.50894 -14.33910 -14.10575 -13.38569 -13.34154 -13.29536 -12.94746 -12.81161 -12.63114 -12.54889 -12.40580 -12.29674 -12.15619 -12.05763 -11.94283 -11.76281 -11.47910 -11.46053 -11.32710 -11.10519 -10.58346 -10.22355 -10.11271 -9.60772 -9.24854 -8.67231 -7.87460 -5.31793 -0.55536 0.30448 1.45223 1.46643 1.47787 1.56735 1.74141 2.05050 2.25466 2.50796 2.95860 3.01781 3.26379 3.27746 3.65573 3.69982 3.79237 3.88522 3.96528 4.07315 4.18023 4.24323 4.35656 4.39214 4.42313 4.49507 4.54260 4.63393 4.65922 4.68384 4.70895 4.81309 4.89634 4.91765 4.94267 5.04987 5.15988 5.20859 5.22038 5.25264 5.31169 5.33982 5.38338 5.40474 5.61556 5.70353 5.74430 6.20234 6.30393 6.38292 6.45064 6.53622 7.10635 7.14147 7.84937 8.38686 9.19196 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017185 B = 0.001658 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.928883 B =16884.806788 C =18078.567531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.107 4.107 5 C -0.076 4.076 6 C -0.143 4.143 7 C 0.555 3.445 8 O -0.579 6.579 9 N -0.712 5.712 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.540 5.540 14 C 0.050 3.950 15 C 0.184 3.816 16 N -0.615 5.615 17 C -0.265 4.265 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.270 1.270 25 C 0.143 3.857 26 C 0.055 3.945 27 C -0.067 4.067 28 C -0.109 4.109 29 H 0.260 0.740 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.414 0.586 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.030 0.970 39 H 0.014 0.986 40 H 0.087 0.913 41 H 0.000 1.000 42 H 0.055 0.945 43 H 0.251 0.749 44 H 0.017 0.983 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.021 0.979 48 H 0.137 0.863 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 -13.504 -13.960 28.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.125 4.125 5 C -0.094 4.094 6 C -0.146 4.146 7 C 0.344 3.656 8 O -0.460 6.460 9 N -0.364 5.364 10 C 0.004 3.996 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.080 4.080 15 C 0.058 3.942 16 N -0.339 5.339 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.581 5.581 21 Si 0.796 3.204 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.194 1.194 25 C 0.017 3.983 26 C -0.075 4.075 27 C -0.086 4.086 28 C -0.127 4.127 29 H 0.276 0.724 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.253 0.747 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.106 0.894 38 H 0.048 0.952 39 H 0.032 0.968 40 H 0.105 0.895 41 H 0.019 0.981 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.035 0.965 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.039 0.961 48 H 0.154 0.846 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.039 -13.948 -14.083 28.906 hybrid contribution 0.684 1.545 -0.060 1.691 sum -20.356 -12.403 -14.143 27.717 Atomic orbital electron populations 1.25863 0.96588 0.96078 0.96513 1.20328 0.92606 1.03988 1.03876 1.16429 0.87463 0.97970 0.95426 1.21411 0.93834 0.98932 0.98317 1.21479 0.94300 0.96482 0.97164 1.20043 0.91969 1.04364 0.98256 1.18517 0.87817 0.77592 0.81720 1.90763 1.70758 1.47335 1.37184 1.45847 1.07727 1.58475 1.24332 1.21243 0.78855 1.01202 0.98313 1.21658 0.94996 1.01475 0.97239 1.22021 0.95059 0.99587 0.90229 1.61894 1.14055 1.12314 1.38205 1.22627 1.00093 0.87706 0.97529 1.20641 0.83711 0.98099 0.91708 1.44410 1.06780 1.02713 1.80030 1.19542 0.91307 0.96791 1.31891 0.91632 1.25764 0.98597 1.02491 0.97696 1.70181 1.20230 1.28290 1.39349 0.85264 0.78763 0.79748 0.76658 1.21261 1.22034 1.19436 1.21132 0.97366 0.84975 0.94803 1.22461 0.87309 1.00687 0.97012 1.21253 0.93923 0.96064 0.97341 1.21330 0.93342 0.99481 0.98510 0.72369 0.82986 0.82497 0.74747 0.91285 0.92084 0.90995 0.89793 0.89379 0.95169 0.96769 0.89458 0.98150 0.92653 0.94039 0.96492 0.92312 0.88661 0.96056 0.84564 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 19.25 74.32 1.43 0.21 16 2 C -0.21 -2.94 13.23 30.01 0.40 -2.54 16 3 C 0.03 0.42 5.73 -21.32 -0.12 0.29 16 4 C -0.11 -1.38 9.73 22.48 0.22 -1.16 16 5 C -0.08 -0.98 9.52 22.48 0.21 -0.76 16 6 C -0.14 -2.56 5.88 -20.05 -0.12 -2.68 16 7 C 0.56 12.21 7.77 86.74 0.67 12.88 16 8 O -0.58 -17.22 16.33 -3.95 -0.06 -17.29 16 9 N -0.71 -12.28 5.50 -466.13 -2.57 -14.85 16 10 C 0.13 2.40 5.67 86.38 0.49 2.89 16 11 C -0.12 -2.22 5.26 30.60 0.16 -2.06 16 12 C 0.06 1.40 4.96 86.30 0.43 1.83 16 13 N -0.54 -17.40 4.63 -895.26 -4.14 -21.54 16 14 C 0.05 1.84 5.46 86.39 0.47 2.31 16 15 C 0.18 8.95 5.42 86.35 0.47 9.42 16 16 N -0.62 -31.45 3.04 -698.15 -2.12 -33.57 16 17 C -0.27 -14.77 9.63 84.03 0.81 -13.96 16 18 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 19 C -0.05 -2.81 4.94 84.86 0.42 -2.39 16 20 N -0.93 -55.28 11.15 21.65 0.24 -55.04 16 21 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 C 0.14 6.00 6.69 86.35 0.58 6.57 16 26 C 0.05 1.83 5.62 86.38 0.49 2.31 16 27 C -0.07 -1.17 9.57 22.48 0.22 -0.96 16 28 C -0.11 -1.62 9.73 22.48 0.22 -1.40 16 29 H 0.26 0.05 7.80 -4.42 -0.03 0.01 16 30 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 31 H 0.16 1.15 6.38 -2.91 -0.02 1.13 16 32 H 0.41 4.86 6.49 -92.71 -0.60 4.26 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.07 1.42 6.40 -2.39 -0.02 1.40 16 36 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.09 1.83 7.97 -2.39 -0.02 1.81 16 38 H 0.03 0.73 8.12 -2.39 -0.02 0.71 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 2.77 6.16 -2.38 -0.01 2.75 16 41 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 42 H 0.06 3.02 6.12 -2.39 -0.01 3.01 16 43 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 46 H 0.10 2.58 7.99 -2.39 -0.02 2.56 16 47 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 48 H 0.14 2.45 7.64 -2.91 -0.02 2.43 16 49 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -73.70 403.96 1.16 -72.54 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.35 Total: 11.96 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 7.44 Total: 10.80 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -8.59 Total: -125.00 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.06 Total: -17.29 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.70 1.16 -72.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265247121.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.528 kcal (2) G-P(sol) polarization free energy of solvation -73.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds