Wall clock time and date at job start Wed Apr 1 2020 01:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47176 * 2 1 4 4 C 1.53000 * 109.46909 * 120.00042 * 2 1 3 5 5 C 1.53007 * 109.47505 * 65.15923 * 4 2 1 6 6 H 1.08998 * 109.46546 * 305.86303 * 5 4 2 7 7 C 1.52997 * 109.46947 * 65.86469 * 5 4 2 8 8 N 1.46495 * 109.47023 * 175.00469 * 7 5 4 9 9 C 1.36942 * 119.99842 * 179.72306 * 8 7 5 10 10 H 1.07998 * 120.00238 * 0.27603 * 9 8 7 11 11 C 1.38811 * 119.99951 * 180.27129 * 9 8 7 12 12 N 1.31624 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46837 * 90.00054 * 13 11 9 15 15 H 1.48500 * 109.47098 * 210.00111 * 13 11 9 16 16 H 1.48497 * 109.47243 * 330.00358 * 13 11 9 17 17 N 1.46498 * 109.47015 * 185.86152 * 5 4 2 18 18 C 1.34780 * 119.99961 * 87.75949 * 17 5 4 19 19 O 1.21569 * 119.99495 * 5.07612 * 18 17 5 20 20 C 1.47751 * 120.00250 * 185.07760 * 18 17 5 21 21 C 1.40605 * 120.26744 * 359.72666 * 20 18 17 22 22 N 1.30791 * 121.53540 * 179.70869 * 21 20 18 23 23 C 1.33819 * 121.72006 * 0.54880 * 22 21 20 24 24 C 1.40529 * 120.80987 * 179.70353 * 23 22 21 25 25 C 1.36136 * 119.81519 * 180.02562 * 24 23 22 26 26 C 1.39342 * 121.08079 * 359.97438 * 25 24 23 27 27 C 1.36140 * 120.84106 * 359.97438 * 26 25 24 28 28 C 1.40538 * 119.61806 * 0.02562 * 27 26 25 29 29 C 1.39007 * 120.27127 * 179.97438 * 20 18 17 30 30 H 1.09003 * 109.46979 * 174.47558 * 1 2 3 31 31 H 1.08992 * 109.47536 * 294.47551 * 1 2 3 32 32 H 1.08995 * 109.46939 * 54.47980 * 1 2 3 33 33 H 1.09007 * 109.47329 * 239.99356 * 2 1 3 34 34 H 1.08999 * 109.47119 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46982 * 299.99646 * 3 2 1 36 36 H 1.08999 * 109.47258 * 60.00047 * 3 2 1 37 37 H 1.09003 * 109.47052 * 305.15900 * 4 2 1 38 38 H 1.09007 * 109.47226 * 185.16009 * 4 2 1 39 39 H 1.09000 * 109.47365 * 54.99496 * 7 5 4 40 40 H 1.09008 * 109.46923 * 294.99918 * 7 5 4 41 41 H 0.96997 * 119.99939 * 359.97438 * 8 7 5 42 42 H 0.97005 * 119.99396 * 179.97438 * 12 11 9 43 43 H 0.96999 * 120.00164 * 267.75603 * 17 5 4 44 44 H 1.08002 * 119.22804 * 359.97414 * 21 20 18 45 45 H 1.08003 * 120.09190 * 0.06681 * 24 23 22 46 46 H 1.07994 * 119.45666 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.57756 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.19078 * 179.97438 * 27 26 25 49 49 H 1.08008 * 121.01713 * 0.03003 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6386 -2.1964 1.1861 6 1 0.5621 -2.2738 1.0341 7 6 2.3679 -2.8741 0.0244 8 7 2.0771 -4.3098 0.0362 9 6 2.6194 -5.1262 -0.9202 10 1 3.2652 -4.7123 -1.6805 11 6 2.3394 -6.4857 -0.9124 12 7 1.5529 -6.9902 0.0147 13 14 3.0786 -7.5992 -2.2174 14 1 4.3862 -8.1185 -1.7421 15 1 2.1591 -8.7361 -2.4768 16 1 3.2783 -6.8282 -3.4707 17 7 2.0030 -2.8558 2.4426 18 6 1.1415 -2.8541 3.4791 19 8 0.0274 -2.3871 3.3426 20 6 1.5511 -3.4198 4.7811 21 6 2.8363 -3.9665 4.9435 22 7 3.2266 -4.4686 6.0864 23 6 2.4207 -4.4974 7.1542 24 6 2.8579 -5.0471 8.3714 25 6 2.0209 -5.0664 9.4449 26 6 0.7304 -4.5477 9.3602 27 6 0.2708 -4.0058 8.1989 28 6 1.1077 -3.9692 7.0705 29 6 0.6673 -3.4205 5.8540 30 1 -0.3633 -1.0229 -0.0989 31 1 -0.3634 0.4257 0.9352 32 1 -0.3633 0.5970 -0.8364 33 1 1.8934 -0.5140 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6031 -0.2635 2.1368 38 1 3.1261 -0.6419 1.2967 39 1 3.4418 -2.7199 0.1300 40 1 2.0299 -2.4427 -0.9179 41 1 1.4974 -4.6816 0.7193 42 1 1.3569 -7.9402 0.0199 43 1 2.8643 -3.2936 2.5285 44 1 3.5184 -3.9680 4.1062 45 1 3.8554 -5.4527 8.4552 46 1 2.3630 -5.4899 10.3775 47 1 0.0868 -4.5751 10.2271 48 1 -0.7315 -3.6071 8.1449 49 1 -0.3274 -3.0111 5.7560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268112834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:33 Heat of formation + Delta-G solvation = 13.808538 kcal Electronic energy + Delta-G solvation = -29183.180804 eV Core-core repulsion = 25302.700337 eV Total energy + Delta-G solvation = -3880.480467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.04914 -39.56754 -37.46092 -36.86160 -34.87001 -33.62288 -33.52477 -31.51187 -30.57420 -30.21355 -28.93610 -27.03512 -25.59022 -24.86013 -24.17749 -22.76401 -22.25394 -21.61255 -20.65239 -19.47128 -18.40249 -17.91443 -17.31549 -16.94719 -16.04473 -15.66735 -15.31622 -14.91771 -14.75750 -14.47806 -14.35851 -14.25611 -13.91834 -13.70556 -13.57826 -13.41964 -13.25675 -13.11336 -12.79034 -12.30318 -12.19561 -11.99333 -11.96244 -11.88600 -11.67863 -11.66999 -11.09854 -10.89511 -10.81281 -10.76859 -10.62938 -10.47742 -10.26549 -10.09502 -9.97573 -9.74976 -9.44304 -9.00220 -8.91448 -8.69168 -8.45153 -6.96278 -5.78143 -3.08194 0.10515 0.48860 1.72824 2.48749 3.28806 3.33499 3.42594 3.47783 3.49635 3.99444 4.08361 4.39493 4.55867 4.56806 4.65457 4.68489 4.85098 4.91399 4.99199 5.00394 5.06390 5.11136 5.25112 5.39110 5.54125 5.55134 5.58021 5.70440 5.72514 5.74065 5.77795 5.82996 5.87441 5.92179 5.99661 6.09539 6.10334 6.16662 6.18101 6.20730 6.30765 6.33737 6.41934 6.49293 6.56700 6.59417 6.69842 6.90564 7.67716 7.71975 7.76775 8.38993 8.40856 9.51321 10.07078 10.42195 11.43971 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.003411 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.902539 B = 8205.703654 C =11003.806073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.119 4.119 5 C 0.134 3.866 6 H 0.095 0.905 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.704 5.704 18 C 0.565 3.435 19 O -0.540 6.540 20 C -0.184 4.184 21 C 0.169 3.831 22 N -0.476 5.476 23 C 0.141 3.859 24 C -0.097 4.097 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.085 4.085 28 C -0.114 4.114 29 C 0.009 3.991 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.164 0.836 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.133 0.867 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 11.840 16.009 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.158 4.158 5 C 0.029 3.971 6 H 0.113 0.887 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.354 5.354 18 C 0.351 3.649 19 O -0.419 6.419 20 C -0.190 4.190 21 C -0.005 4.005 22 N -0.183 5.183 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.104 4.104 28 C -0.116 4.116 29 C -0.018 4.018 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.054 0.946 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.181 0.819 45 H 0.155 0.845 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.456 11.746 15.932 19.800 hybrid contribution -0.198 -0.820 -0.621 1.047 sum 0.259 10.926 15.312 18.812 Atomic orbital electron populations 1.21873 0.95147 1.02271 1.01242 1.21127 0.96124 0.95778 0.98531 1.21823 1.00744 0.96223 1.01368 1.21992 1.00928 0.94728 0.98187 1.21413 1.01839 0.90837 0.82973 0.88667 1.21020 0.96474 0.86512 0.94394 1.42356 1.59006 1.01043 1.35197 1.19196 1.23185 0.89167 1.05878 0.91149 1.24747 1.00180 0.96941 0.98841 1.69673 1.40337 1.12459 1.35312 0.86206 0.78295 0.80576 0.81182 1.21700 1.21803 1.20765 1.45868 1.20228 1.56286 1.12995 1.17893 0.84749 0.78785 0.83436 1.90755 1.19973 1.47419 1.83731 1.21040 0.96781 1.05319 0.95812 1.23131 0.92911 0.89530 0.94921 1.67971 1.35100 1.16110 0.99145 1.19044 0.89684 0.95862 0.93433 1.20846 1.00745 0.99295 0.90708 1.20964 0.93724 0.98158 0.98655 1.20922 0.96210 0.98948 0.98115 1.21067 0.99216 0.98238 0.91844 1.18838 0.95582 1.02040 0.95118 1.21950 0.99241 0.90735 0.89837 0.92039 0.92854 0.93120 0.90349 0.92854 0.92878 0.93045 0.91841 0.91751 0.95863 0.94584 0.78025 0.93491 0.76130 0.81871 0.84511 0.85206 0.85385 0.84927 0.82966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.82 37.16 0.33 -1.56 16 2 C -0.10 -1.19 2.80 -90.62 -0.25 -1.44 16 3 C -0.14 -1.49 9.19 37.15 0.34 -1.15 16 4 C -0.12 -1.58 4.45 -26.73 -0.12 -1.70 16 5 C 0.13 2.17 2.16 -67.93 -0.15 2.03 16 6 H 0.10 1.77 5.72 -51.93 -0.30 1.47 16 7 C 0.14 2.72 5.49 -4.05 -0.02 2.70 16 8 N -0.73 -17.83 5.43 -59.91 -0.33 -18.16 16 9 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 10 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 13 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.70 -11.12 4.44 -54.78 -0.24 -11.37 16 18 C 0.57 9.37 7.76 -12.37 -0.10 9.28 16 19 O -0.54 -10.31 15.97 5.31 0.08 -10.22 16 20 C -0.18 -2.71 5.89 -104.83 -0.62 -3.33 16 21 C 0.17 2.39 10.68 -17.10 -0.18 2.21 16 22 N -0.48 -6.99 10.30 -10.67 -0.11 -7.10 16 23 C 0.14 1.90 6.61 -84.79 -0.56 1.34 16 24 C -0.10 -1.05 9.97 -39.47 -0.39 -1.45 16 25 C -0.10 -0.80 9.94 -39.93 -0.40 -1.20 16 26 C -0.12 -1.02 9.96 -39.92 -0.40 -1.41 16 27 C -0.08 -0.82 9.77 -39.47 -0.39 -1.21 16 28 C -0.11 -1.43 5.74 -106.82 -0.61 -2.04 16 29 C 0.01 0.12 9.46 -38.43 -0.36 -0.24 16 30 H 0.06 0.89 6.72 -51.93 -0.35 0.54 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.02 6.48 -51.93 -0.34 0.68 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.04 0.69 6.72 -51.92 -0.35 0.34 16 41 H 0.39 10.15 7.33 -40.82 -0.30 9.85 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.40 5.95 6.67 -40.82 -0.27 5.68 16 44 H 0.16 2.03 6.38 -52.49 -0.34 1.69 16 45 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 48 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 49 H 0.15 1.86 7.70 -52.48 -0.40 1.46 16 LS Contribution 401.49 15.07 6.05 6.05 Total: -1.00 -33.03 401.49 -10.23 -43.26 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -7.26 Total: 13.94 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.12 Total: -6.37 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.05 Total: -63.89 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.03 -10.23 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268112834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.069 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds