Wall clock time and date at job start Wed Apr 1 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47176 * 2 1 4 4 C 1.53000 * 109.46909 * 120.00042 * 2 1 3 5 5 C 1.53007 * 109.47505 * 65.15923 * 4 2 1 6 6 H 1.08998 * 109.46546 * 305.86303 * 5 4 2 7 7 C 1.52997 * 109.46947 * 65.86469 * 5 4 2 8 8 N 1.46495 * 109.47023 * 175.00469 * 7 5 4 9 9 C 1.36942 * 119.99842 * 179.72306 * 8 7 5 10 10 H 1.07998 * 120.00238 * 0.27603 * 9 8 7 11 11 C 1.38811 * 119.99951 * 180.27129 * 9 8 7 12 12 N 1.31624 * 119.99773 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00087 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46837 * 90.00054 * 13 11 9 15 15 H 1.48500 * 109.47098 * 210.00111 * 13 11 9 16 16 H 1.48497 * 109.47243 * 330.00358 * 13 11 9 17 17 N 1.46498 * 109.47015 * 185.86152 * 5 4 2 18 18 C 1.34780 * 119.99961 * 87.75949 * 17 5 4 19 19 O 1.21569 * 119.99495 * 5.07612 * 18 17 5 20 20 C 1.47751 * 120.00250 * 185.07760 * 18 17 5 21 21 C 1.40605 * 120.26744 * 359.72666 * 20 18 17 22 22 N 1.30791 * 121.53540 * 179.70869 * 21 20 18 23 23 C 1.33819 * 121.72006 * 0.54880 * 22 21 20 24 24 C 1.40529 * 120.80987 * 179.70353 * 23 22 21 25 25 C 1.36136 * 119.81519 * 180.02562 * 24 23 22 26 26 C 1.39342 * 121.08079 * 359.97438 * 25 24 23 27 27 C 1.36140 * 120.84106 * 359.97438 * 26 25 24 28 28 C 1.40538 * 119.61806 * 0.02562 * 27 26 25 29 29 C 1.39007 * 120.27127 * 179.97438 * 20 18 17 30 30 H 1.09003 * 109.46979 * 174.47558 * 1 2 3 31 31 H 1.08992 * 109.47536 * 294.47551 * 1 2 3 32 32 H 1.08995 * 109.46939 * 54.47980 * 1 2 3 33 33 H 1.09007 * 109.47329 * 239.99356 * 2 1 3 34 34 H 1.08999 * 109.47119 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.46982 * 299.99646 * 3 2 1 36 36 H 1.08999 * 109.47258 * 60.00047 * 3 2 1 37 37 H 1.09003 * 109.47052 * 305.15900 * 4 2 1 38 38 H 1.09007 * 109.47226 * 185.16009 * 4 2 1 39 39 H 1.09000 * 109.47365 * 54.99496 * 7 5 4 40 40 H 1.09008 * 109.46923 * 294.99918 * 7 5 4 41 41 H 0.96997 * 119.99939 * 359.97438 * 8 7 5 42 42 H 0.97005 * 119.99396 * 179.97438 * 12 11 9 43 43 H 0.96999 * 120.00164 * 267.75603 * 17 5 4 44 44 H 1.08002 * 119.22804 * 359.97414 * 21 20 18 45 45 H 1.08003 * 120.09190 * 0.06681 * 24 23 22 46 46 H 1.07994 * 119.45666 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.57756 * 180.02562 * 26 25 24 48 48 H 1.07999 * 120.19078 * 179.97438 * 27 26 25 49 49 H 1.08008 * 121.01713 * 0.03003 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6386 -2.1964 1.1861 6 1 0.5621 -2.2738 1.0341 7 6 2.3679 -2.8741 0.0244 8 7 2.0771 -4.3098 0.0362 9 6 2.6194 -5.1262 -0.9202 10 1 3.2652 -4.7123 -1.6805 11 6 2.3394 -6.4857 -0.9124 12 7 1.5529 -6.9902 0.0147 13 14 3.0786 -7.5992 -2.2174 14 1 4.3862 -8.1185 -1.7421 15 1 2.1591 -8.7361 -2.4768 16 1 3.2783 -6.8282 -3.4707 17 7 2.0030 -2.8558 2.4426 18 6 1.1415 -2.8541 3.4791 19 8 0.0274 -2.3871 3.3426 20 6 1.5511 -3.4198 4.7811 21 6 2.8363 -3.9665 4.9435 22 7 3.2266 -4.4686 6.0864 23 6 2.4207 -4.4974 7.1542 24 6 2.8579 -5.0471 8.3714 25 6 2.0209 -5.0664 9.4449 26 6 0.7304 -4.5477 9.3602 27 6 0.2708 -4.0058 8.1989 28 6 1.1077 -3.9692 7.0705 29 6 0.6673 -3.4205 5.8540 30 1 -0.3633 -1.0229 -0.0989 31 1 -0.3634 0.4257 0.9352 32 1 -0.3633 0.5970 -0.8364 33 1 1.8934 -0.5140 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6031 -0.2635 2.1368 38 1 3.1261 -0.6419 1.2967 39 1 3.4418 -2.7199 0.1300 40 1 2.0299 -2.4427 -0.9179 41 1 1.4974 -4.6816 0.7193 42 1 1.3569 -7.9402 0.0199 43 1 2.8643 -3.2936 2.5285 44 1 3.5184 -3.9680 4.1062 45 1 3.8554 -5.4527 8.4552 46 1 2.3630 -5.4899 10.3775 47 1 0.0868 -4.5751 10.2271 48 1 -0.7315 -3.6071 8.1449 49 1 -0.3274 -3.0111 5.7560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268112834.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:32 Heat of formation + Delta-G solvation = -6.257369 kcal Electronic energy + Delta-G solvation = -29184.050927 eV Core-core repulsion = 25302.700337 eV Total energy + Delta-G solvation = -3881.350590 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04632 -40.79433 -38.62218 -37.86671 -36.35364 -35.20547 -34.51703 -33.11632 -31.87383 -31.07446 -30.24581 -27.99836 -27.21775 -25.92640 -25.13150 -24.50878 -23.12342 -22.91115 -21.86252 -20.62082 -19.57594 -19.05721 -18.85303 -18.20491 -17.12829 -16.96242 -16.62742 -16.23336 -15.96589 -15.59103 -15.49931 -15.27154 -15.16696 -15.00523 -14.97791 -14.54289 -14.45080 -14.22075 -14.15960 -13.77910 -13.37491 -13.17186 -12.93555 -12.80043 -12.77546 -12.73715 -12.62413 -12.44419 -12.21068 -12.02454 -11.92079 -11.77632 -11.62012 -11.56458 -11.38807 -11.25009 -10.93713 -10.55645 -10.10462 -9.82279 -9.31401 -9.00245 -7.93947 -5.23442 -0.83418 -0.44721 0.82373 1.47833 1.49041 1.49735 1.57448 2.06233 2.22070 2.56140 3.03523 3.13263 3.40460 3.52608 3.55764 3.67584 3.73100 3.78116 3.88285 3.98854 4.06624 4.17098 4.21150 4.21553 4.31759 4.41457 4.43221 4.58257 4.68316 4.76581 4.78960 4.83412 4.90023 4.93496 4.95802 5.00634 5.04035 5.05659 5.13987 5.15725 5.33302 5.35866 5.39912 5.44378 5.48411 5.49978 5.52530 5.57822 5.83746 6.26244 6.45412 6.72818 7.10784 7.33761 8.07650 8.30958 9.29053 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007737 B = 0.003411 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3617.902539 B = 8205.703654 C =11003.806073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.108 4.108 5 C 0.143 3.857 6 H 0.069 0.931 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.080 0.920 11 C -0.074 4.074 12 N -0.969 5.969 13 Si 0.972 3.028 14 H -0.286 1.286 15 H -0.300 1.300 16 H -0.268 1.268 17 N -0.701 5.701 18 C 0.566 3.434 19 O -0.573 6.573 20 C -0.205 4.205 21 C 0.159 3.841 22 N -0.495 5.495 23 C 0.116 3.884 24 C -0.120 4.120 25 C -0.077 4.077 26 C -0.113 4.113 27 C -0.093 4.093 28 C -0.128 4.128 29 C 0.010 3.990 30 H 0.036 0.964 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.407 0.593 44 H 0.171 0.829 45 H 0.144 0.856 46 H 0.167 0.833 47 H 0.167 0.833 48 H 0.155 0.845 49 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.953 12.665 17.561 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.147 4.147 5 C 0.038 3.962 6 H 0.087 0.913 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.373 4.373 10 H 0.098 0.902 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.801 3.199 14 H -0.213 1.213 15 H -0.227 1.227 16 H -0.193 1.193 17 N -0.351 5.351 18 C 0.353 3.647 19 O -0.454 6.454 20 C -0.211 4.211 21 C -0.015 4.015 22 N -0.203 5.203 23 C -0.004 4.004 24 C -0.139 4.139 25 C -0.096 4.096 26 C -0.131 4.131 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.016 4.016 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.244 0.756 44 H 0.188 0.812 45 H 0.161 0.839 46 H 0.185 0.815 47 H 0.184 0.816 48 H 0.173 0.827 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.140 12.617 17.467 21.577 hybrid contribution -0.435 -1.053 -0.925 1.467 sum 0.705 11.564 16.542 20.196 Atomic orbital electron populations 1.21848 0.95718 1.00960 1.01793 1.21134 0.95639 0.97183 0.97536 1.21773 1.01293 0.94454 1.02098 1.21908 1.01841 0.92247 0.98688 1.21259 0.99969 0.92599 0.82353 0.91275 1.21163 0.97462 0.83769 0.95671 1.42538 1.58608 1.03098 1.34333 1.19628 1.22110 0.89643 1.05899 0.90196 1.25543 1.01356 0.98574 1.01138 1.69845 1.42479 1.12181 1.37468 0.85168 0.77154 0.78386 0.79205 1.21346 1.22708 1.19300 1.45845 1.20328 1.56184 1.12727 1.18169 0.84225 0.78168 0.84097 1.90721 1.21193 1.49095 1.84386 1.20891 0.97670 1.07215 0.95283 1.23193 0.92948 0.89991 0.95325 1.67964 1.35941 1.16688 0.99659 1.19514 0.90231 0.96640 0.94036 1.21079 1.01894 1.00325 0.90586 1.21454 0.93229 0.95870 0.99050 1.21423 0.96398 0.96681 0.98594 1.21406 0.99914 0.98437 0.91383 1.19056 0.95909 1.02308 0.95737 1.22141 0.99220 0.90190 0.90060 0.94490 0.93069 0.91550 0.90866 0.91939 0.91814 0.92689 0.92195 0.90149 0.94288 0.94098 0.79556 0.94257 0.75582 0.81222 0.83855 0.81539 0.81579 0.82698 0.82359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.82 71.98 0.63 -3.09 16 2 C -0.10 -2.28 2.80 -10.80 -0.03 -2.31 16 3 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 4 C -0.11 -2.83 4.45 30.60 0.14 -2.69 16 5 C 0.14 4.77 2.16 44.99 0.10 4.87 16 6 H 0.07 2.71 5.72 -2.39 -0.01 2.70 16 7 C 0.15 5.53 5.49 86.38 0.47 6.00 16 8 N -0.74 -36.92 5.43 -343.46 -1.87 -38.79 16 9 C -0.24 -13.19 9.99 84.03 0.84 -12.35 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 12 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 13 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 17 N -0.70 -23.14 4.44 -445.49 -1.98 -25.12 16 18 C 0.57 19.83 7.76 86.76 0.67 20.50 16 19 O -0.57 -23.06 15.97 -3.93 -0.06 -23.12 16 20 C -0.21 -6.39 5.89 -20.00 -0.12 -6.51 16 21 C 0.16 4.77 10.68 85.43 0.91 5.69 16 22 N -0.49 -15.09 10.30 -187.68 -1.93 -17.03 16 23 C 0.12 3.15 6.61 40.27 0.27 3.41 16 24 C -0.12 -2.45 9.97 22.34 0.22 -2.22 16 25 C -0.08 -1.03 9.94 22.05 0.22 -0.81 16 26 C -0.11 -1.43 9.96 22.05 0.22 -1.21 16 27 C -0.09 -1.60 9.77 22.34 0.22 -1.38 16 28 C -0.13 -3.19 5.74 -21.29 -0.12 -3.31 16 29 C 0.01 0.29 9.46 23.01 0.22 0.51 16 30 H 0.04 1.11 6.72 -2.39 -0.02 1.09 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.82 6.48 -2.38 -0.02 1.81 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.54 6.72 -2.38 -0.02 1.53 16 41 H 0.37 20.37 7.33 -92.71 -0.68 19.69 16 42 H 0.25 15.04 8.31 -92.70 -0.77 14.27 16 43 H 0.41 12.57 6.67 -92.71 -0.62 11.95 16 44 H 0.17 4.54 6.38 -2.91 -0.02 4.52 16 45 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 46 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 47 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 48 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 49 H 0.16 4.02 7.70 -2.91 -0.02 4.00 16 Total: -1.00 -73.40 401.49 2.14 -71.26 By element: Atomic # 1 Polarization: 45.17 SS G_CDS: -0.32 Total: 44.84 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 5.99 Total: -0.58 kcal Atomic # 7 Polarization: -135.09 SS G_CDS: -5.49 Total: -140.59 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -73.40 2.14 -71.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268112834.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.007 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds