Wall clock time and date at job start Wed Apr 1 2020 01:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47138 * 120.00151 * 2 1 3 5 5 C 1.53002 * 109.47187 * 174.82815 * 4 2 1 6 6 H 1.09001 * 109.47151 * 54.11813 * 5 4 2 7 7 C 1.53003 * 109.46931 * 294.12594 * 5 4 2 8 8 N 1.46502 * 109.47267 * 185.00114 * 7 5 4 9 9 C 1.36932 * 120.00126 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00217 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99764 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00087 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47069 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47072 * 119.99969 * 13 11 9 16 16 H 1.48498 * 109.46996 * 239.99617 * 13 11 9 17 17 N 1.46498 * 109.47330 * 174.12684 * 5 4 2 18 18 C 1.34785 * 119.99442 * 272.08280 * 17 5 4 19 19 O 1.21559 * 120.00125 * 5.05747 * 18 17 5 20 20 C 1.47757 * 119.99772 * 185.05978 * 18 17 5 21 21 C 1.40598 * 120.26872 * 359.72093 * 20 18 17 22 22 N 1.30798 * 121.53584 * 179.76488 * 21 20 18 23 23 C 1.33814 * 121.72090 * 0.49864 * 22 21 20 24 24 C 1.40520 * 120.81479 * 179.73088 * 23 22 21 25 25 C 1.36128 * 119.81669 * 180.02562 * 24 23 22 26 26 C 1.39339 * 121.08660 * 0.02562 * 25 24 23 27 27 C 1.36138 * 120.83588 * 359.97438 * 26 25 24 28 28 C 1.40536 * 119.61991 * 359.97438 * 27 26 25 29 29 C 1.39010 * 120.26777 * 180.02562 * 20 18 17 30 30 H 1.08999 * 109.46415 * 299.99769 * 1 2 3 31 31 H 1.08998 * 109.46633 * 59.99809 * 1 2 3 32 32 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47094 * 240.00345 * 2 1 3 34 34 H 1.08992 * 109.47452 * 305.52147 * 3 2 1 35 35 H 1.09004 * 109.47064 * 65.52717 * 3 2 1 36 36 H 1.09005 * 109.46587 * 185.52309 * 3 2 1 37 37 H 1.09008 * 109.47218 * 54.83210 * 4 2 1 38 38 H 1.08999 * 109.47146 * 294.82593 * 4 2 1 39 39 H 1.08998 * 109.47676 * 64.99789 * 7 5 4 40 40 H 1.08999 * 109.47183 * 304.99536 * 7 5 4 41 41 H 0.97001 * 119.99592 * 359.97438 * 8 7 5 42 42 H 0.97005 * 119.99635 * 180.02562 * 12 11 9 43 43 H 0.96987 * 120.00365 * 92.08427 * 17 5 4 44 44 H 1.08003 * 119.22849 * 0.02562 * 21 20 18 45 45 H 1.08005 * 120.09197 * 0.03161 * 24 23 22 46 46 H 1.08007 * 119.45608 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.58314 * 180.02562 * 26 25 24 48 48 H 1.07997 * 120.18846 * 179.97438 * 27 26 25 49 49 H 1.08006 * 121.01658 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5645 -0.8349 1.1859 6 1 3.9966 0.1542 1.0334 7 6 3.9600 -1.7487 0.0242 8 7 5.4106 -1.9534 0.0359 9 6 5.9986 -2.7413 -0.9174 10 1 5.3929 -3.2121 -1.6776 11 6 7.3731 -2.9348 -0.9065 12 7 8.1113 -2.3607 0.0196 13 14 8.1751 -4.0102 -2.2065 14 1 7.1338 -4.5356 -3.1257 15 1 9.1566 -3.2059 -2.9777 16 1 8.8725 -5.1446 -1.5492 17 7 4.0649 -1.3980 2.4423 18 6 4.3538 -0.5846 3.4775 19 8 4.1132 0.6045 3.4017 20 6 4.9631 -1.1384 4.7045 21 6 5.2384 -2.5138 4.8004 22 7 5.7813 -3.0296 5.8728 23 6 6.0928 -2.2776 6.9350 24 6 6.6705 -2.8527 8.0796 25 6 6.9787 -2.0687 9.1489 26 6 6.7306 -0.6977 9.1311 27 6 6.1722 -0.1037 8.0408 28 6 5.8421 -0.8823 6.9184 29 6 5.2628 -0.3047 5.7757 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.5982 1.9841 -0.8363 35 1 1.7597 1.9270 0.9354 36 1 3.1256 1.4441 -0.0989 37 1 1.6031 -1.7188 1.2967 38 1 1.7544 -0.1568 2.1368 39 1 3.6659 -1.2865 -0.9181 40 1 3.4567 -2.7096 0.1302 41 1 5.9546 -1.5303 0.7184 42 1 9.0719 -2.4957 0.0269 43 1 4.1883 -2.3561 2.5292 44 1 4.9998 -3.1588 3.9676 45 1 6.8695 -3.9138 8.1108 46 1 7.4230 -2.5167 10.0255 47 1 6.9852 -0.0985 9.9928 48 1 5.9841 0.9598 8.0384 49 1 5.0578 0.7548 5.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268112836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:38 Heat of formation + Delta-G solvation = 13.691431 kcal Electronic energy + Delta-G solvation = -29231.972945 eV Core-core repulsion = 25351.487400 eV Total energy + Delta-G solvation = -3880.485545 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02147 -39.56508 -37.44537 -36.83956 -34.87450 -33.61845 -33.50207 -31.50153 -30.56643 -30.18636 -28.92841 -27.02663 -25.58039 -24.84106 -24.14579 -22.76682 -22.22580 -21.60837 -20.65058 -19.46707 -18.39062 -17.89059 -17.30629 -16.93209 -16.03425 -15.65016 -15.32508 -14.87959 -14.73014 -14.47075 -14.33197 -14.21556 -13.98261 -13.68008 -13.52516 -13.42157 -13.25268 -13.08991 -12.79342 -12.30048 -12.18473 -11.96200 -11.94473 -11.87611 -11.66743 -11.64268 -11.10359 -10.89885 -10.81093 -10.77420 -10.60529 -10.46698 -10.25866 -10.07829 -9.94980 -9.76149 -9.41406 -8.97933 -8.92217 -8.69394 -8.42514 -6.97026 -5.78968 -3.08929 0.13197 0.52154 1.75519 2.51410 3.26107 3.37862 3.42192 3.47671 3.50034 4.02465 4.12253 4.42173 4.55936 4.58971 4.67892 4.71904 4.87606 4.93767 5.00158 5.01982 5.07626 5.12327 5.28402 5.39636 5.53755 5.55886 5.60626 5.72369 5.74092 5.76272 5.77872 5.83901 5.90405 5.92894 6.00591 6.10307 6.12721 6.17308 6.20188 6.21623 6.33564 6.34543 6.42394 6.49452 6.58034 6.62359 6.69291 6.89830 7.67797 7.73962 7.79175 8.38180 8.40284 9.50614 10.06096 10.41247 11.43205 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.003557 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.855304 B = 7868.998885 C =10877.904646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.119 4.119 5 C 0.136 3.864 6 H 0.093 0.907 7 C 0.143 3.857 8 N -0.731 5.731 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 N -0.704 5.704 18 C 0.566 3.434 19 O -0.541 6.541 20 C -0.184 4.184 21 C 0.171 3.829 22 N -0.475 5.475 23 C 0.141 3.859 24 C -0.097 4.097 25 C -0.095 4.095 26 C -0.124 4.124 27 C -0.085 4.085 28 C -0.114 4.114 29 C 0.008 3.992 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.037 0.963 40 H 0.024 0.976 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.403 0.597 44 H 0.165 0.835 45 H 0.137 0.863 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.132 0.868 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 3.730 15.578 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.159 4.159 5 C 0.032 3.968 6 H 0.111 0.889 7 C 0.015 3.985 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.354 5.354 18 C 0.352 3.648 19 O -0.420 6.420 20 C -0.190 4.190 21 C -0.003 4.003 22 N -0.182 5.182 23 C 0.020 3.980 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.142 4.142 27 C -0.104 4.104 28 C -0.116 4.116 29 C -0.018 4.018 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.238 0.762 44 H 0.182 0.818 45 H 0.155 0.845 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.150 0.850 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.035 3.556 15.482 18.789 hybrid contribution 0.745 -0.082 -0.595 0.957 sum -9.290 3.474 14.887 17.889 Atomic orbital electron populations 1.21824 0.95563 1.01404 1.01360 1.21130 0.95262 0.96640 0.98535 1.21871 1.01660 0.95706 1.01259 1.21984 0.95012 1.00589 0.98268 1.21404 0.93230 0.99329 0.82872 0.88896 1.21034 0.87415 0.95598 0.94407 1.42360 1.00582 1.59268 1.35416 1.19240 0.90506 1.21666 1.05956 0.91091 1.24743 0.96289 1.00830 0.98833 1.69675 1.05090 1.47681 1.35309 0.86142 0.79334 0.79866 0.80972 1.20542 1.21893 1.21860 1.45879 1.65661 1.10743 1.13093 1.17899 0.77929 0.86199 0.82790 1.90747 1.53997 1.15351 1.81893 1.21032 1.05748 0.95654 0.96533 1.23147 0.90215 0.91867 0.95086 1.67978 1.11840 1.38478 0.99949 1.19050 0.96185 0.89349 0.93391 1.20847 0.98459 1.00828 0.91419 1.20959 0.98424 0.93823 0.98333 1.20915 0.99638 0.95068 0.98604 1.21058 0.97448 0.99755 0.92131 1.18835 1.02381 0.94580 0.95817 1.21937 0.89562 1.00597 0.89730 0.93030 0.92900 0.92870 0.90405 0.93153 0.92794 0.92113 0.91826 0.91621 0.94546 0.95824 0.78067 0.93534 0.76156 0.81819 0.84506 0.85222 0.85411 0.84965 0.83011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.10 -1.20 2.80 -90.62 -0.25 -1.45 16 3 C -0.15 -1.89 8.82 37.16 0.33 -1.56 16 4 C -0.12 -1.60 4.46 -26.73 -0.12 -1.72 16 5 C 0.14 2.21 2.08 -67.93 -0.14 2.07 16 6 H 0.09 1.71 5.85 -51.93 -0.30 1.41 16 7 C 0.14 2.70 5.49 -4.04 -0.02 2.68 16 8 N -0.73 -17.71 5.43 -59.91 -0.33 -18.04 16 9 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 10 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 11 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 12 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 13 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.70 -11.11 4.44 -54.77 -0.24 -11.35 16 18 C 0.57 9.37 7.76 -12.37 -0.10 9.27 16 19 O -0.54 -10.18 16.05 5.31 0.09 -10.09 16 20 C -0.18 -2.76 5.89 -104.83 -0.62 -3.38 16 21 C 0.17 2.51 10.68 -17.10 -0.18 2.33 16 22 N -0.48 -7.25 10.30 -10.67 -0.11 -7.36 16 23 C 0.14 1.96 6.61 -84.79 -0.56 1.40 16 24 C -0.10 -1.09 9.97 -39.48 -0.39 -1.48 16 25 C -0.10 -0.84 9.94 -39.93 -0.40 -1.23 16 26 C -0.12 -1.05 9.96 -39.93 -0.40 -1.45 16 27 C -0.09 -0.84 9.77 -39.47 -0.39 -1.23 16 28 C -0.11 -1.46 5.74 -106.81 -0.61 -2.08 16 29 C 0.01 0.11 9.46 -38.43 -0.36 -0.25 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.01 6.48 -51.93 -0.34 0.68 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.87 6.72 -51.93 -0.35 0.53 16 37 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.04 0.69 6.72 -51.93 -0.35 0.34 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.39 10.04 7.33 -40.82 -0.30 9.74 16 42 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.40 5.93 6.67 -40.82 -0.27 5.66 16 44 H 0.16 2.16 6.38 -52.48 -0.34 1.83 16 45 H 0.14 1.36 8.06 -52.48 -0.42 0.94 16 46 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 48 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 49 H 0.15 1.87 7.70 -52.48 -0.40 1.46 16 LS Contribution 401.63 15.07 6.05 6.05 Total: -1.00 -32.82 401.63 -10.23 -43.05 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.27 Total: 14.09 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -4.12 Total: -6.38 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.05 Total: -63.88 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.82 -10.23 -43.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268112836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.737 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds