Wall clock time and date at job start Wed Apr 1 2020 01:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.52998 * 109.47138 * 120.00151 * 2 1 3 5 5 C 1.53002 * 109.47187 * 174.82815 * 4 2 1 6 6 H 1.09001 * 109.47151 * 54.11813 * 5 4 2 7 7 C 1.53003 * 109.46931 * 294.12594 * 5 4 2 8 8 N 1.46502 * 109.47267 * 185.00114 * 7 5 4 9 9 C 1.36932 * 120.00126 * 180.02562 * 8 7 5 10 10 H 1.08001 * 120.00217 * 359.97438 * 9 8 7 11 11 C 1.38817 * 119.99764 * 179.97438 * 9 8 7 12 12 N 1.31615 * 120.00087 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99740 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47069 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47072 * 119.99969 * 13 11 9 16 16 H 1.48498 * 109.46996 * 239.99617 * 13 11 9 17 17 N 1.46498 * 109.47330 * 174.12684 * 5 4 2 18 18 C 1.34785 * 119.99442 * 272.08280 * 17 5 4 19 19 O 1.21559 * 120.00125 * 5.05747 * 18 17 5 20 20 C 1.47757 * 119.99772 * 185.05978 * 18 17 5 21 21 C 1.40598 * 120.26872 * 359.72093 * 20 18 17 22 22 N 1.30798 * 121.53584 * 179.76488 * 21 20 18 23 23 C 1.33814 * 121.72090 * 0.49864 * 22 21 20 24 24 C 1.40520 * 120.81479 * 179.73088 * 23 22 21 25 25 C 1.36128 * 119.81669 * 180.02562 * 24 23 22 26 26 C 1.39339 * 121.08660 * 0.02562 * 25 24 23 27 27 C 1.36138 * 120.83588 * 359.97438 * 26 25 24 28 28 C 1.40536 * 119.61991 * 359.97438 * 27 26 25 29 29 C 1.39010 * 120.26777 * 180.02562 * 20 18 17 30 30 H 1.08999 * 109.46415 * 299.99769 * 1 2 3 31 31 H 1.08998 * 109.46633 * 59.99809 * 1 2 3 32 32 H 1.09000 * 109.46992 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47094 * 240.00345 * 2 1 3 34 34 H 1.08992 * 109.47452 * 305.52147 * 3 2 1 35 35 H 1.09004 * 109.47064 * 65.52717 * 3 2 1 36 36 H 1.09005 * 109.46587 * 185.52309 * 3 2 1 37 37 H 1.09008 * 109.47218 * 54.83210 * 4 2 1 38 38 H 1.08999 * 109.47146 * 294.82593 * 4 2 1 39 39 H 1.08998 * 109.47676 * 64.99789 * 7 5 4 40 40 H 1.08999 * 109.47183 * 304.99536 * 7 5 4 41 41 H 0.97001 * 119.99592 * 359.97438 * 8 7 5 42 42 H 0.97005 * 119.99635 * 180.02562 * 12 11 9 43 43 H 0.96987 * 120.00365 * 92.08427 * 17 5 4 44 44 H 1.08003 * 119.22849 * 0.02562 * 21 20 18 45 45 H 1.08005 * 120.09197 * 0.03161 * 24 23 22 46 46 H 1.08007 * 119.45608 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.58314 * 180.02562 * 26 25 24 48 48 H 1.07997 * 120.18846 * 179.97438 * 27 26 25 49 49 H 1.08006 * 121.01658 * 359.97438 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5645 -0.8349 1.1859 6 1 3.9966 0.1542 1.0334 7 6 3.9600 -1.7487 0.0242 8 7 5.4106 -1.9534 0.0359 9 6 5.9986 -2.7413 -0.9174 10 1 5.3929 -3.2121 -1.6776 11 6 7.3731 -2.9348 -0.9065 12 7 8.1113 -2.3607 0.0196 13 14 8.1751 -4.0102 -2.2065 14 1 7.1338 -4.5356 -3.1257 15 1 9.1566 -3.2059 -2.9777 16 1 8.8725 -5.1446 -1.5492 17 7 4.0649 -1.3980 2.4423 18 6 4.3538 -0.5846 3.4775 19 8 4.1132 0.6045 3.4017 20 6 4.9631 -1.1384 4.7045 21 6 5.2384 -2.5138 4.8004 22 7 5.7813 -3.0296 5.8728 23 6 6.0928 -2.2776 6.9350 24 6 6.6705 -2.8527 8.0796 25 6 6.9787 -2.0687 9.1489 26 6 6.7306 -0.6977 9.1311 27 6 6.1722 -0.1037 8.0408 28 6 5.8421 -0.8823 6.9184 29 6 5.2628 -0.3047 5.7757 30 1 -0.3632 0.5138 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.5982 1.9841 -0.8363 35 1 1.7597 1.9270 0.9354 36 1 3.1256 1.4441 -0.0989 37 1 1.6031 -1.7188 1.2967 38 1 1.7544 -0.1568 2.1368 39 1 3.6659 -1.2865 -0.9181 40 1 3.4567 -2.7096 0.1302 41 1 5.9546 -1.5303 0.7184 42 1 9.0719 -2.4957 0.0269 43 1 4.1883 -2.3561 2.5292 44 1 4.9998 -3.1588 3.9676 45 1 6.8695 -3.9138 8.1108 46 1 7.4230 -2.5167 10.0255 47 1 6.9852 -0.0985 9.9928 48 1 5.9841 0.9598 8.0384 49 1 5.0578 0.7548 5.7307 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268112836.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:37 Heat of formation + Delta-G solvation = -6.144486 kcal Electronic energy + Delta-G solvation = -29232.833095 eV Core-core repulsion = 25351.487400 eV Total energy + Delta-G solvation = -3881.345695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.04297 -40.79470 -38.61679 -37.86273 -36.35467 -35.20213 -34.51360 -33.11022 -31.87715 -31.07166 -30.24144 -27.99454 -27.21271 -25.91704 -25.12915 -24.51127 -23.12098 -22.91164 -21.86592 -20.61857 -19.57950 -19.05334 -18.85065 -18.20564 -17.12812 -16.97225 -16.60286 -16.22688 -15.94673 -15.58892 -15.48990 -15.30086 -15.15512 -15.02281 -14.99039 -14.50487 -14.44998 -14.21820 -14.15373 -13.78013 -13.37168 -13.17024 -12.94308 -12.80959 -12.78938 -12.73700 -12.61705 -12.44130 -12.18310 -12.00573 -11.91737 -11.77130 -11.61761 -11.55815 -11.40465 -11.22786 -10.94821 -10.54567 -10.10864 -9.81912 -9.31163 -9.00151 -7.93996 -5.23259 -0.82879 -0.44338 0.82703 1.48018 1.48161 1.49737 1.58262 2.04961 2.24078 2.56092 3.03798 3.14065 3.40780 3.53070 3.56379 3.68034 3.73043 3.78684 3.88931 3.98855 4.06931 4.17424 4.21110 4.21698 4.31722 4.41814 4.42366 4.58481 4.68609 4.77210 4.78933 4.83777 4.90595 4.93696 4.95939 5.01872 5.04206 5.05973 5.14127 5.15681 5.33546 5.36177 5.40195 5.44451 5.48401 5.50028 5.53020 5.58180 5.84052 6.26283 6.45526 6.73896 7.10215 7.34023 8.07618 8.31055 9.29116 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007517 B = 0.003557 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3723.855304 B = 7868.998885 C =10877.904646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 C -0.145 4.145 4 C -0.108 4.108 5 C 0.145 3.855 6 H 0.068 0.932 7 C 0.146 3.854 8 N -0.743 5.743 9 C -0.239 4.239 10 H 0.080 0.920 11 C -0.073 4.073 12 N -0.968 5.968 13 Si 0.970 3.030 14 H -0.263 1.263 15 H -0.298 1.298 16 H -0.295 1.295 17 N -0.701 5.701 18 C 0.567 3.433 19 O -0.570 6.570 20 C -0.206 4.206 21 C 0.159 3.841 22 N -0.497 5.497 23 C 0.116 3.884 24 C -0.121 4.121 25 C -0.076 4.076 26 C -0.114 4.114 27 C -0.092 4.092 28 C -0.128 4.128 29 C 0.011 3.989 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.373 0.627 42 H 0.248 0.752 43 H 0.407 0.593 44 H 0.168 0.832 45 H 0.142 0.858 46 H 0.167 0.833 47 H 0.167 0.833 48 H 0.157 0.843 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 3.622 17.065 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.147 4.147 5 C 0.041 3.959 6 H 0.086 0.914 7 C 0.019 3.981 8 N -0.386 5.386 9 C -0.371 4.371 10 H 0.098 0.902 11 C -0.265 4.265 12 N -0.619 5.619 13 Si 0.800 3.200 14 H -0.187 1.187 15 H -0.225 1.225 16 H -0.223 1.223 17 N -0.351 5.351 18 C 0.354 3.646 19 O -0.451 6.451 20 C -0.211 4.211 21 C -0.014 4.014 22 N -0.204 5.204 23 C -0.005 4.005 24 C -0.140 4.140 25 C -0.096 4.096 26 C -0.131 4.131 27 C -0.111 4.111 28 C -0.130 4.130 29 C -0.016 4.016 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.205 0.795 42 H 0.057 0.943 43 H 0.244 0.756 44 H 0.185 0.815 45 H 0.160 0.840 46 H 0.184 0.816 47 H 0.185 0.815 48 H 0.174 0.826 49 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.892 3.426 16.951 20.438 hybrid contribution 1.001 -0.002 -0.883 1.335 sum -9.891 3.424 16.068 19.177 Atomic orbital electron populations 1.21775 0.93516 1.02252 1.02081 1.21138 0.96928 0.95905 0.97533 1.21845 1.00200 0.96452 1.01775 1.21898 0.92519 1.01568 0.98722 1.21248 0.95121 0.97315 0.82254 0.91374 1.21171 0.84529 0.96719 0.95668 1.42538 1.02688 1.58778 1.34555 1.19655 0.90799 1.20717 1.05934 0.90202 1.25523 0.97101 1.02839 1.01083 1.69842 1.04807 1.49820 1.37450 0.85119 0.78360 0.77860 0.78693 1.18729 1.22519 1.22273 1.45852 1.65481 1.10958 1.12817 1.18134 0.77383 0.85816 0.83267 1.90714 1.55433 1.16415 1.82572 1.20902 1.07627 0.96078 0.96486 1.23169 0.90901 0.91923 0.95441 1.67956 1.12525 1.39345 1.00601 1.19522 0.96949 0.90131 0.93867 1.21072 0.99634 1.01694 0.91586 1.21451 0.95926 0.93933 0.98284 1.21423 0.97415 0.95236 0.99036 1.21409 0.97281 1.00874 0.91495 1.19061 1.02754 0.94606 0.96604 1.22144 0.88837 1.00860 0.89716 0.92726 0.91803 0.91972 0.90861 0.91564 0.93088 0.94461 0.90297 0.92142 0.94023 0.94324 0.79525 0.94278 0.75624 0.81520 0.83992 0.81552 0.81517 0.82576 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 2 C -0.10 -2.29 2.80 -10.79 -0.03 -2.32 16 3 C -0.15 -3.71 8.82 71.98 0.63 -3.08 16 4 C -0.11 -2.86 4.46 30.59 0.14 -2.72 16 5 C 0.15 4.83 2.08 44.99 0.09 4.93 16 6 H 0.07 2.65 5.85 -2.39 -0.01 2.63 16 7 C 0.15 5.49 5.49 86.38 0.47 5.96 16 8 N -0.74 -36.62 5.43 -343.44 -1.87 -38.49 16 9 C -0.24 -13.02 9.99 84.04 0.84 -12.18 16 10 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 11 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 12 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 13 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 14 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 16 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 17 N -0.70 -23.11 4.44 -445.48 -1.98 -25.09 16 18 C 0.57 19.78 7.76 86.76 0.67 20.46 16 19 O -0.57 -22.49 16.05 -3.90 -0.06 -22.56 16 20 C -0.21 -6.52 5.89 -20.00 -0.12 -6.64 16 21 C 0.16 5.00 10.68 85.42 0.91 5.91 16 22 N -0.50 -15.87 10.30 -187.68 -1.93 -17.81 16 23 C 0.12 3.25 6.61 40.27 0.27 3.52 16 24 C -0.12 -2.59 9.97 22.34 0.22 -2.37 16 25 C -0.08 -1.08 9.94 22.04 0.22 -0.86 16 26 C -0.11 -1.48 9.96 22.05 0.22 -1.26 16 27 C -0.09 -1.61 9.77 22.34 0.22 -1.39 16 28 C -0.13 -3.26 5.74 -21.28 -0.12 -3.39 16 29 C 0.01 0.31 9.46 23.01 0.22 0.52 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.82 6.48 -2.38 -0.02 1.81 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.04 1.11 6.72 -2.38 -0.02 1.09 16 37 H 0.08 1.85 8.14 -2.38 -0.02 1.84 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.56 6.72 -2.39 -0.02 1.55 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.37 20.17 7.33 -92.71 -0.68 19.49 16 42 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 43 H 0.41 12.57 6.67 -92.72 -0.62 11.95 16 44 H 0.17 4.80 6.38 -2.91 -0.02 4.78 16 45 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 46 H 0.17 1.14 8.06 -2.91 -0.02 1.12 16 47 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 48 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 49 H 0.16 4.05 7.70 -2.91 -0.02 4.03 16 Total: -1.00 -72.84 401.63 2.13 -70.71 By element: Atomic # 1 Polarization: 45.38 SS G_CDS: -0.32 Total: 45.06 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.99 Total: -0.56 kcal Atomic # 7 Polarization: -135.25 SS G_CDS: -5.49 Total: -140.74 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.84 2.13 -70.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268112836.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.565 kcal (2) G-P(sol) polarization free energy of solvation -72.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds