Wall clock time and date at job start Wed Apr 1 2020 01:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47458 * 2 1 4 4 C 1.53002 * 109.47013 * 119.99987 * 2 1 3 5 5 H 1.08997 * 109.47200 * 59.99938 * 4 2 1 6 6 C 1.53004 * 109.47286 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47202 * 174.99911 * 6 4 2 8 8 C 1.34776 * 120.00033 * 179.97438 * 7 6 4 9 9 O 1.21584 * 120.00064 * 0.02562 * 8 7 6 10 10 C 1.47574 * 119.99839 * 180.02562 * 8 7 6 11 11 C 1.39648 * 120.19577 * 6.79267 * 10 8 7 12 12 C 1.37832 * 119.91956 * 179.97438 * 11 10 8 13 13 C 1.38533 * 120.31013 * 359.97438 * 12 11 10 14 14 C 1.38069 * 120.39387 * 0.02562 * 13 12 11 15 15 C 1.38766 * 120.07125 * 359.97438 * 14 13 12 16 16 N 1.39668 * 120.15415 * 179.97438 * 15 14 13 17 17 C 1.36655 * 125.67545 * 57.33005 * 16 15 14 18 18 C 1.34815 * 108.19020 * 179.89044 * 17 16 15 19 19 C 1.40998 * 107.48331 * 0.36917 * 18 17 16 20 20 C 1.34805 * 107.48628 * 359.76958 * 19 18 17 21 21 N 1.46500 * 109.47112 * 300.00080 * 4 2 1 22 22 C 1.36936 * 120.00334 * 84.99823 * 21 4 2 23 23 H 1.08001 * 119.99764 * 359.97438 * 22 21 4 24 24 C 1.38814 * 120.00218 * 179.97438 * 22 21 4 25 25 N 1.31613 * 119.99754 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99961 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47110 * 60.00128 * 26 24 22 28 28 H 1.48501 * 109.47252 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47192 * 300.00037 * 26 24 22 30 30 H 1.09000 * 109.47662 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47612 * 300.00216 * 1 2 3 32 32 H 1.09009 * 109.47104 * 60.00014 * 1 2 3 33 33 H 1.08997 * 109.47167 * 239.99698 * 2 1 3 34 34 H 1.09001 * 109.47585 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46988 * 300.00160 * 3 2 1 36 36 H 1.08997 * 109.47178 * 59.99705 * 3 2 1 37 37 H 1.09006 * 109.46989 * 54.99645 * 6 4 2 38 38 H 1.08995 * 109.46820 * 294.99985 * 6 4 2 39 39 H 0.97002 * 120.00002 * 0.02562 * 7 6 4 40 40 H 1.08007 * 120.04473 * 359.95960 * 11 10 8 41 41 H 1.08003 * 119.84462 * 179.72386 * 12 11 10 42 42 H 1.07996 * 119.80329 * 179.97438 * 13 12 11 43 43 H 1.07998 * 119.96430 * 179.97438 * 14 13 12 44 44 H 1.07996 * 125.90699 * 0.02562 * 17 16 15 45 45 H 1.07993 * 126.25709 * 180.13772 * 18 17 16 46 46 H 1.07997 * 126.25371 * 179.75144 * 19 18 17 47 47 H 1.08000 * 125.89978 * 179.97438 * 20 19 18 48 48 H 0.97010 * 119.99718 * 265.00148 * 21 4 2 49 49 H 0.97000 * 120.00103 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 3.5699 -0.7207 1.2496 7 7 4.0582 -1.3045 2.5015 8 6 5.3832 -1.4086 2.7248 9 8 6.1734 -1.0176 1.8875 10 6 5.8750 -1.9971 3.9856 11 6 4.9790 -2.5756 4.8871 12 6 5.4446 -3.1241 6.0628 13 6 6.7986 -3.1051 6.3551 14 6 7.6958 -2.5365 5.4730 15 6 7.2446 -1.9796 4.2847 16 7 8.1506 -1.4035 3.3914 17 6 9.2230 -2.0343 2.8262 18 6 9.8531 -1.1545 2.0221 19 6 9.1516 0.0662 2.0980 20 6 8.1156 -0.1136 2.9417 21 7 1.5515 -0.0307 2.4454 22 6 0.3100 -0.3210 2.9448 23 1 -0.3094 -1.0588 2.4566 24 6 -0.1525 0.3330 4.0785 25 7 0.6021 1.2325 4.6732 26 14 -1.8459 -0.0636 4.7601 27 1 -1.9082 -1.5017 5.1250 28 1 -2.1008 0.7650 5.9657 29 1 -2.8752 0.2310 3.7309 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 1.8932 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9329 0.3032 1.1603 38 1 3.9336 -1.3099 0.4079 39 1 3.4278 -1.6167 3.1693 40 1 3.9225 -2.5930 4.6636 41 1 4.7501 -3.5672 6.7612 42 1 7.1544 -3.5368 7.2788 43 1 8.7498 -2.5251 5.7081 44 1 9.5142 -3.0609 2.9930 45 1 10.7359 -1.3482 1.4312 46 1 9.3992 0.9786 1.5760 47 1 7.3847 0.6329 3.2152 48 1 2.1077 0.6324 2.8837 49 1 0.2791 1.6893 5.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268217127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:47 Heat of formation + Delta-G solvation = 63.955383 kcal Electronic energy + Delta-G solvation = -30119.546915 eV Core-core repulsion = 26241.240979 eV Total energy + Delta-G solvation = -3878.305936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.50420 -39.60798 -38.37818 -37.23171 -34.07243 -32.98296 -32.95725 -31.60522 -30.15796 -28.92001 -28.55698 -27.86920 -26.33464 -24.38264 -23.48460 -22.98861 -22.04804 -20.48079 -20.01882 -19.84814 -18.93241 -18.32963 -17.49854 -17.07852 -16.12045 -15.41513 -15.27803 -15.09066 -14.80693 -14.56772 -14.28213 -14.01332 -13.67652 -13.48790 -13.41569 -13.28616 -13.16695 -12.92352 -12.54630 -12.26343 -12.13944 -12.10333 -11.92682 -11.74706 -11.56752 -11.35230 -11.05714 -10.95254 -10.85481 -10.58009 -10.29142 -10.19240 -9.95517 -9.68036 -9.51093 -9.41430 -9.25052 -8.97121 -8.65333 -8.21569 -7.77631 -7.07734 -5.86613 -3.15673 0.59932 0.97740 2.52524 2.94176 3.06802 3.34870 3.35712 3.40939 3.42339 3.43610 3.71210 4.49214 4.58620 4.65182 4.80916 5.02345 5.09961 5.15689 5.33501 5.38882 5.40701 5.49469 5.54679 5.63040 5.70058 5.70793 5.80541 5.85283 5.86645 6.00753 6.01912 6.10291 6.18229 6.20918 6.31889 6.39919 6.48286 6.51071 6.52623 6.53769 6.61944 6.67403 6.77389 6.89718 7.03024 7.21316 7.31205 7.43225 7.61522 7.69612 7.84937 8.30428 8.48105 9.42696 9.97241 10.33678 11.34856 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003514 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.582942 B = 7966.876126 C = 9687.136514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.168 3.832 5 H 0.053 0.947 6 C 0.114 3.886 7 N -0.704 5.704 8 C 0.543 3.457 9 O -0.525 6.525 10 C -0.130 4.130 11 C -0.067 4.067 12 C -0.122 4.122 13 C -0.084 4.084 14 C -0.129 4.129 15 C 0.173 3.827 16 N -0.401 5.401 17 C -0.021 4.021 18 C -0.190 4.190 19 C -0.212 4.212 20 C 0.059 3.941 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.072 0.928 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.408 0.592 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.154 0.846 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.151 0.849 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.902 -8.183 -0.001 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.070 0.930 6 C -0.011 4.011 7 N -0.356 5.356 8 C 0.329 3.671 9 O -0.402 6.402 10 C -0.134 4.134 11 C -0.086 4.086 12 C -0.141 4.141 13 C -0.103 4.103 14 C -0.149 4.149 15 C 0.081 3.919 16 N -0.075 5.075 17 C -0.147 4.147 18 C -0.215 4.215 19 C -0.236 4.236 20 C -0.069 4.069 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.732 3.268 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.246 0.754 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.172 0.828 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.168 0.832 48 H 0.220 0.780 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.063 -8.077 -0.372 15.362 hybrid contribution -1.319 -0.078 0.783 1.536 sum 11.743 -8.155 0.410 14.303 Atomic orbital electron populations 1.21835 0.95001 1.00815 1.02108 1.21606 0.96784 0.96592 0.97880 1.21791 0.99692 0.96738 1.01655 1.20548 0.89271 0.95932 0.88540 0.92954 1.21776 0.95684 0.98548 0.85047 1.45918 1.06226 1.61978 1.21479 1.18085 0.83021 0.79704 0.86300 1.90851 1.54644 1.48810 1.45935 1.20137 0.92864 1.03687 0.96747 1.21433 0.99801 0.94486 0.92887 1.21237 0.95808 0.99879 0.97127 1.21216 0.93036 0.97202 0.98863 1.21117 1.00861 1.00540 0.92358 1.17640 0.87706 0.96766 0.89822 1.41158 1.21254 1.10081 1.35009 1.21678 0.91580 0.98748 1.02680 1.20787 1.02522 0.94161 1.04001 1.20723 0.99185 0.99052 1.04635 1.21547 0.99937 0.85107 1.00302 1.42423 1.18003 1.47502 1.28041 1.19147 0.92859 1.18163 1.06728 0.91026 1.24699 0.98158 0.99167 0.98492 1.69643 1.36864 1.28912 1.22195 0.86368 0.84559 0.77438 0.78391 1.21359 1.21825 1.21295 0.94165 0.89366 0.94995 0.93273 0.93647 0.94287 0.91278 0.91155 0.91913 0.75447 0.84211 0.84675 0.84835 0.84830 0.82821 0.85042 0.85040 0.83158 0.78048 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 8.26 37.15 0.31 -2.17 16 2 C -0.11 -1.79 2.80 -90.62 -0.25 -2.04 16 3 C -0.14 -2.38 8.69 37.16 0.32 -2.05 16 4 C 0.17 2.98 2.35 -67.93 -0.16 2.82 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.89 5.02 -4.04 -0.02 1.87 16 7 N -0.70 -11.53 5.34 -61.34 -0.33 -11.86 16 8 C 0.54 9.18 7.58 -12.45 -0.09 9.09 16 9 O -0.52 -10.08 12.62 5.29 0.07 -10.01 16 10 C -0.13 -1.91 5.87 -104.82 -0.62 -2.52 16 11 C -0.07 -0.84 9.52 -39.20 -0.37 -1.21 16 12 C -0.12 -1.24 10.02 -39.62 -0.40 -1.64 16 13 C -0.08 -0.78 10.03 -39.53 -0.40 -1.17 16 14 C -0.13 -1.41 9.77 -39.45 -0.39 -1.79 16 15 C 0.17 2.41 5.85 -83.35 -0.49 1.92 16 16 N -0.40 -6.02 2.10 -60.69 -0.13 -6.14 16 17 C -0.02 -0.29 11.22 -16.62 -0.19 -0.48 16 18 C -0.19 -2.64 10.86 -39.75 -0.43 -3.07 16 19 C -0.21 -3.19 10.86 -39.75 -0.43 -3.63 16 20 C 0.06 0.94 8.00 -16.62 -0.13 0.80 16 21 N -0.72 -15.42 3.67 -53.42 -0.20 -15.61 16 22 C -0.24 -5.75 7.57 -15.06 -0.11 -5.86 16 23 H 0.07 1.71 7.39 -52.49 -0.39 1.32 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -25.70 13.06 55.49 0.72 -24.98 16 26 Si 0.90 20.83 29.55 -169.99 -5.02 15.81 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 32 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.72 6.32 -51.93 -0.33 0.40 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.35 7.60 -51.93 -0.39 0.95 16 37 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.41 6.64 6.22 -40.82 -0.25 6.39 16 40 H 0.14 1.70 6.46 -52.48 -0.34 1.36 16 41 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 47 H 0.15 2.43 7.96 -52.49 -0.42 2.01 16 48 H 0.39 9.17 7.80 -40.82 -0.32 8.85 16 49 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -29.12 394.82 -10.16 -39.28 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -7.28 Total: 19.01 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.95 Total: -11.45 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.07 Total: -58.60 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.12 -10.16 -39.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268217127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.238 kcal (2) G-P(sol) polarization free energy of solvation -29.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds