Wall clock time and date at job start Wed Apr 1 2020 01:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47458 * 2 1 4 4 C 1.53002 * 109.47013 * 119.99987 * 2 1 3 5 5 H 1.08997 * 109.47200 * 59.99938 * 4 2 1 6 6 C 1.53004 * 109.47286 * 180.02562 * 4 2 1 7 7 N 1.46498 * 109.47202 * 174.99911 * 6 4 2 8 8 C 1.34776 * 120.00033 * 179.97438 * 7 6 4 9 9 O 1.21584 * 120.00064 * 0.02562 * 8 7 6 10 10 C 1.47574 * 119.99839 * 180.02562 * 8 7 6 11 11 C 1.39648 * 120.19577 * 6.79267 * 10 8 7 12 12 C 1.37832 * 119.91956 * 179.97438 * 11 10 8 13 13 C 1.38533 * 120.31013 * 359.97438 * 12 11 10 14 14 C 1.38069 * 120.39387 * 0.02562 * 13 12 11 15 15 C 1.38766 * 120.07125 * 359.97438 * 14 13 12 16 16 N 1.39668 * 120.15415 * 179.97438 * 15 14 13 17 17 C 1.36655 * 125.67545 * 57.33005 * 16 15 14 18 18 C 1.34815 * 108.19020 * 179.89044 * 17 16 15 19 19 C 1.40998 * 107.48331 * 0.36917 * 18 17 16 20 20 C 1.34805 * 107.48628 * 359.76958 * 19 18 17 21 21 N 1.46500 * 109.47112 * 300.00080 * 4 2 1 22 22 C 1.36936 * 120.00334 * 84.99823 * 21 4 2 23 23 H 1.08001 * 119.99764 * 359.97438 * 22 21 4 24 24 C 1.38814 * 120.00218 * 179.97438 * 22 21 4 25 25 N 1.31613 * 119.99754 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99961 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47110 * 60.00128 * 26 24 22 28 28 H 1.48501 * 109.47252 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47192 * 300.00037 * 26 24 22 30 30 H 1.09000 * 109.47662 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47612 * 300.00216 * 1 2 3 32 32 H 1.09009 * 109.47104 * 60.00014 * 1 2 3 33 33 H 1.08997 * 109.47167 * 239.99698 * 2 1 3 34 34 H 1.09001 * 109.47585 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46988 * 300.00160 * 3 2 1 36 36 H 1.08997 * 109.47178 * 59.99705 * 3 2 1 37 37 H 1.09006 * 109.46989 * 54.99645 * 6 4 2 38 38 H 1.08995 * 109.46820 * 294.99985 * 6 4 2 39 39 H 0.97002 * 120.00002 * 0.02562 * 7 6 4 40 40 H 1.08007 * 120.04473 * 359.95960 * 11 10 8 41 41 H 1.08003 * 119.84462 * 179.72386 * 12 11 10 42 42 H 1.07996 * 119.80329 * 179.97438 * 13 12 11 43 43 H 1.07998 * 119.96430 * 179.97438 * 14 13 12 44 44 H 1.07996 * 125.90699 * 0.02562 * 17 16 15 45 45 H 1.07993 * 126.25709 * 180.13772 * 18 17 16 46 46 H 1.07997 * 126.25371 * 179.75144 * 19 18 17 47 47 H 1.08000 * 125.89978 * 179.97438 * 20 19 18 48 48 H 0.97010 * 119.99718 * 265.00148 * 21 4 2 49 49 H 0.97000 * 120.00103 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 3.5699 -0.7207 1.2496 7 7 4.0582 -1.3045 2.5015 8 6 5.3832 -1.4086 2.7248 9 8 6.1734 -1.0176 1.8875 10 6 5.8750 -1.9971 3.9856 11 6 4.9790 -2.5756 4.8871 12 6 5.4446 -3.1241 6.0628 13 6 6.7986 -3.1051 6.3551 14 6 7.6958 -2.5365 5.4730 15 6 7.2446 -1.9796 4.2847 16 7 8.1506 -1.4035 3.3914 17 6 9.2230 -2.0343 2.8262 18 6 9.8531 -1.1545 2.0221 19 6 9.1516 0.0662 2.0980 20 6 8.1156 -0.1136 2.9417 21 7 1.5515 -0.0307 2.4454 22 6 0.3100 -0.3210 2.9448 23 1 -0.3094 -1.0588 2.4566 24 6 -0.1525 0.3330 4.0785 25 7 0.6021 1.2325 4.6732 26 14 -1.8459 -0.0636 4.7601 27 1 -1.9082 -1.5017 5.1250 28 1 -2.1008 0.7650 5.9657 29 1 -2.8752 0.2310 3.7309 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 1.8932 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.9329 0.3032 1.1603 38 1 3.9336 -1.3099 0.4079 39 1 3.4278 -1.6167 3.1693 40 1 3.9225 -2.5930 4.6636 41 1 4.7501 -3.5672 6.7612 42 1 7.1544 -3.5368 7.2788 43 1 8.7498 -2.5251 5.7081 44 1 9.5142 -3.0609 2.9930 45 1 10.7359 -1.3482 1.4312 46 1 9.3992 0.9786 1.5760 47 1 7.3847 0.6329 3.2152 48 1 2.1077 0.6324 2.8837 49 1 0.2791 1.6893 5.4656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268217127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:46 Heat of formation + Delta-G solvation = 49.530938 kcal Electronic energy + Delta-G solvation = -30120.172406 eV Core-core repulsion = 26241.240979 eV Total energy + Delta-G solvation = -3878.931427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.56830 -40.81360 -39.47799 -38.67490 -35.43467 -34.74913 -33.99363 -32.64435 -31.83631 -29.97155 -29.65530 -29.28398 -27.76828 -25.85508 -24.90464 -24.00058 -23.39148 -21.72024 -21.06591 -20.97230 -20.29540 -19.54786 -19.11872 -18.36583 -17.31994 -16.82989 -16.38129 -16.27425 -16.07396 -15.84779 -15.79917 -15.15351 -15.11845 -14.88880 -14.68728 -14.46585 -14.36636 -14.26522 -13.82234 -13.60984 -13.27930 -13.16491 -13.01409 -12.90415 -12.89808 -12.77520 -12.66414 -12.50322 -12.39759 -12.15661 -11.96554 -11.90281 -11.40173 -11.20349 -10.99496 -10.79452 -10.37639 -10.24288 -9.94454 -9.26208 -8.93636 -8.90306 -7.84975 -5.11460 -0.37894 0.08979 1.45710 1.51007 1.52967 1.57554 1.82500 2.03783 2.19065 2.23986 2.61188 2.69038 3.47929 3.63091 3.67803 3.89437 3.92863 3.99778 4.03694 4.24175 4.26006 4.29247 4.33149 4.33867 4.40931 4.54273 4.66065 4.66663 4.71471 4.77671 4.86590 4.93723 4.96436 5.08274 5.11412 5.20215 5.20783 5.27215 5.30545 5.33943 5.39529 5.43716 5.51215 5.57758 5.64076 5.70002 5.81301 6.12220 6.33641 6.34167 6.52418 6.64877 7.17487 7.43020 8.13903 8.40083 9.37359 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003514 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.582942 B = 7966.876126 C = 9687.136514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.134 4.134 4 C 0.171 3.829 5 H 0.056 0.944 6 C 0.123 3.877 7 N -0.704 5.704 8 C 0.539 3.461 9 O -0.554 6.554 10 C -0.157 4.157 11 C -0.076 4.076 12 C -0.118 4.118 13 C -0.066 4.066 14 C -0.126 4.126 15 C 0.149 3.851 16 N -0.404 5.404 17 C -0.022 4.022 18 C -0.202 4.202 19 C -0.223 4.223 20 C 0.032 3.968 21 N -0.720 5.720 22 C -0.215 4.215 23 H 0.078 0.922 24 C -0.067 4.067 25 N -0.965 5.965 26 Si 0.955 3.045 27 H -0.278 1.278 28 H -0.305 1.305 29 H -0.286 1.286 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.408 0.592 40 H 0.136 0.864 41 H 0.163 0.837 42 H 0.176 0.824 43 H 0.154 0.846 44 H 0.182 0.818 45 H 0.154 0.846 46 H 0.139 0.861 47 H 0.134 0.866 48 H 0.372 0.628 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.554 -10.630 0.268 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.062 3.938 5 H 0.074 0.926 6 C -0.001 4.001 7 N -0.355 5.355 8 C 0.327 3.673 9 O -0.434 6.434 10 C -0.161 4.161 11 C -0.096 4.096 12 C -0.136 4.136 13 C -0.085 4.085 14 C -0.145 4.145 15 C 0.057 3.943 16 N -0.077 5.077 17 C -0.148 4.148 18 C -0.227 4.227 19 C -0.247 4.247 20 C -0.096 4.096 21 N -0.360 5.360 22 C -0.346 4.346 23 H 0.096 0.904 24 C -0.259 4.259 25 N -0.616 5.616 26 Si 0.786 3.214 27 H -0.204 1.204 28 H -0.232 1.232 29 H -0.213 1.213 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.246 0.754 40 H 0.154 0.846 41 H 0.181 0.819 42 H 0.193 0.807 43 H 0.172 0.828 44 H 0.199 0.801 45 H 0.172 0.828 46 H 0.157 0.843 47 H 0.152 0.848 48 H 0.205 0.795 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.697 -10.567 -0.136 17.300 hybrid contribution -1.486 0.622 0.656 1.740 sum 12.211 -9.945 0.520 15.757 Atomic orbital electron populations 1.21746 0.95363 1.00937 1.01235 1.21576 0.96360 0.96536 0.98112 1.21704 0.99975 0.96661 1.00820 1.20663 0.89857 0.95653 0.87650 0.92556 1.21626 0.94717 0.98017 0.85725 1.45895 1.06350 1.61939 1.21333 1.18525 0.82686 0.79129 0.86994 1.90825 1.55179 1.50188 1.47174 1.20063 0.93832 1.05710 0.96512 1.21517 0.99380 0.94955 0.93708 1.21613 0.97003 0.98682 0.96282 1.21694 0.92187 0.95101 0.99484 1.21411 1.02287 0.99574 0.91197 1.17985 0.87355 0.97953 0.91017 1.41274 1.21593 1.09678 1.35185 1.22213 0.90873 0.99829 1.01889 1.21112 1.03384 0.93610 1.04555 1.20996 0.99202 1.00109 1.04406 1.21475 1.00402 0.85909 1.01799 1.42476 1.17115 1.47315 1.29097 1.19417 0.93263 1.16458 1.05494 0.90401 1.25275 1.00917 1.00080 0.99656 1.69794 1.38295 1.30820 1.22737 0.85486 0.81494 0.77256 0.77143 1.20413 1.23224 1.21254 0.93478 0.92962 0.93112 0.90496 0.93143 0.92529 0.94597 0.92561 0.90905 0.75439 0.84640 0.81907 0.80704 0.82849 0.80089 0.82799 0.84300 0.84825 0.79541 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 8.26 71.98 0.59 -3.98 16 2 C -0.10 -3.36 2.80 -10.80 -0.03 -3.39 16 3 C -0.13 -4.45 8.69 71.98 0.63 -3.82 16 4 C 0.17 5.99 2.35 44.99 0.11 6.09 16 5 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 6 C 0.12 4.14 5.02 86.38 0.43 4.58 16 7 N -0.70 -23.66 5.34 -466.23 -2.49 -26.14 16 8 C 0.54 18.85 7.58 86.71 0.66 19.50 16 9 O -0.55 -22.08 12.62 -3.98 -0.05 -22.13 16 10 C -0.16 -4.64 5.87 -20.00 -0.12 -4.76 16 11 C -0.08 -1.86 9.52 22.51 0.21 -1.64 16 12 C -0.12 -2.06 10.02 22.24 0.22 -1.84 16 13 C -0.07 -0.97 10.03 22.30 0.22 -0.75 16 14 C -0.13 -2.42 9.77 22.36 0.22 -2.20 16 15 C 0.15 4.07 5.85 38.50 0.23 4.30 16 16 N -0.40 -12.12 2.10 -345.92 -0.73 -12.85 16 17 C -0.02 -0.59 11.22 83.16 0.93 0.35 16 18 C -0.20 -5.48 10.86 22.16 0.24 -5.24 16 19 C -0.22 -6.87 10.86 22.16 0.24 -6.63 16 20 C 0.03 1.08 8.00 83.15 0.67 1.74 16 21 N -0.72 -31.38 3.67 -322.93 -1.19 -32.57 16 22 C -0.21 -10.39 7.57 84.03 0.64 -9.76 16 23 H 0.08 3.64 7.39 -2.91 -0.02 3.62 16 24 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 25 N -0.97 -55.06 13.06 21.65 0.28 -54.77 16 26 Si 0.96 43.28 29.55 68.60 2.03 45.31 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 29 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 2.15 6.01 -2.39 -0.01 2.14 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.60 6.32 -2.39 -0.02 1.59 16 35 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.03 1.42 7.60 -2.39 -0.02 1.40 16 37 H 0.06 2.06 6.17 -2.38 -0.01 2.04 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.41 13.64 6.22 -92.71 -0.58 13.06 16 40 H 0.14 3.30 6.46 -2.91 -0.02 3.28 16 41 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 42 H 0.18 1.17 8.06 -2.91 -0.02 1.14 16 43 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 44 H 0.18 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 46 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 47 H 0.13 4.73 7.96 -2.91 -0.02 4.70 16 48 H 0.37 18.34 7.80 -92.70 -0.72 17.62 16 49 H 0.25 13.99 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -65.19 394.82 4.08 -61.11 By element: Atomic # 1 Polarization: 52.86 SS G_CDS: -0.33 Total: 52.52 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 6.56 Total: -10.48 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -4.12 Total: -126.34 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -65.19 4.08 -61.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268217127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.641 kcal (2) G-P(sol) polarization free energy of solvation -65.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds