Wall clock time and date at job start Wed Apr 1 2020 01:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47392 * 2 1 4 4 F 1.39905 * 109.47310 * 120.00081 * 2 1 3 5 5 C 1.50708 * 109.47009 * 239.99945 * 2 1 3 6 6 O 1.21277 * 119.99924 * 114.99988 * 5 2 1 7 7 N 1.34771 * 119.99835 * 294.99993 * 5 2 1 8 8 C 1.47179 * 135.99918 * 359.63409 * 7 5 2 9 9 C 1.53195 * 87.73967 * 153.41546 * 8 7 5 10 10 C 1.47177 * 135.99505 * 179.97438 * 7 5 2 11 11 C 1.52601 * 114.02435 * 139.57460 * 9 8 7 12 12 C 1.53319 * 108.89729 * 186.63548 * 11 9 8 13 13 C 1.53029 * 109.16201 * 304.76868 * 12 11 9 14 14 N 1.46816 * 109.80492 * 61.05986 * 13 12 11 15 15 C 1.46898 * 111.00212 * 172.35282 * 14 13 12 16 16 C 1.50698 * 109.46846 * 190.51435 * 15 14 13 17 17 O 1.21295 * 120.00349 * 6.28177 * 16 15 14 18 18 N 1.34779 * 119.99762 * 186.27320 * 16 15 14 19 19 C 1.37104 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99561 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99640 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47302 * 60.00387 * 23 21 19 25 25 H 1.48502 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47098 * 299.99851 * 23 21 19 27 27 C 1.47046 * 111.14774 * 296.41672 * 14 13 12 28 28 H 1.09003 * 109.46827 * 299.99657 * 1 2 3 29 29 H 1.08992 * 109.47248 * 59.99905 * 1 2 3 30 30 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46940 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.46855 * 60.00360 * 3 2 1 34 34 H 1.09003 * 113.48955 * 268.10586 * 8 7 5 35 35 H 1.09004 * 113.48660 * 38.61715 * 8 7 5 36 36 H 1.08998 * 113.48945 * 321.38126 * 10 7 5 37 37 H 1.09003 * 113.48502 * 91.89087 * 10 7 5 38 38 H 1.09005 * 109.56710 * 306.45980 * 11 9 8 39 39 H 1.08997 * 109.57229 * 66.80556 * 11 9 8 40 40 H 1.09003 * 109.52560 * 184.86581 * 12 11 9 41 41 H 1.08997 * 109.57277 * 64.70230 * 12 11 9 42 42 H 1.09004 * 109.41373 * 300.95622 * 13 12 11 43 43 H 1.09001 * 109.36483 * 181.13108 * 13 12 11 44 44 H 1.08996 * 109.46802 * 310.51392 * 15 14 13 45 45 H 1.08996 * 109.46877 * 70.51775 * 15 14 13 46 46 H 0.96996 * 119.99972 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99676 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.49975 * 299.15527 * 27 14 13 49 49 H 1.08994 * 109.50129 * 179.04391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0323 -0.7105 -1.2305 6 8 2.6529 -0.0980 -2.0735 7 7 1.7918 -2.0264 -1.3942 8 6 1.1097 -3.0814 -0.6274 9 6 0.8556 -3.7990 -1.9568 10 6 2.1014 -3.0402 -2.4152 11 6 1.0368 -5.3128 -1.8902 12 6 0.9196 -5.8896 -3.3059 13 6 -0.4141 -5.4540 -3.9170 14 7 -0.4672 -3.9893 -4.0025 15 6 -1.6535 -3.5481 -4.7481 16 6 -1.5444 -2.0735 -5.0387 17 8 -0.5260 -1.4748 -4.7637 18 7 -2.5785 -1.4198 -5.6044 19 6 -2.4790 -0.0783 -5.8693 20 1 -1.5722 0.4547 -5.6242 21 6 -3.5453 0.5957 -6.4519 22 7 -4.6488 -0.0528 -6.7496 23 14 -3.4100 2.4237 -6.8122 24 1 -2.2812 2.6618 -7.7471 25 1 -4.6735 2.9013 -7.4291 26 1 -3.1683 3.1611 -5.5461 27 6 -0.4276 -3.3780 -2.6656 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.7725 -3.6293 0.0423 35 1 0.1990 -2.7405 -0.1347 36 1 2.0302 -2.6646 -3.4360 37 1 3.0311 -3.5770 -2.2265 38 1 2.0203 -5.5451 -1.4817 39 1 0.2643 -5.7454 -1.2546 40 1 0.9611 -6.9779 -3.2604 41 1 1.7400 -5.5191 -3.9203 42 1 -1.2327 -5.8104 -3.2917 43 1 -0.5098 -5.8790 -4.9161 44 1 -1.7188 -4.0994 -5.6861 45 1 -2.5472 -3.7360 -4.1532 46 1 -3.3930 -1.8985 -5.8241 47 1 -5.3933 0.4178 -7.1561 48 1 -1.2891 -3.7119 -2.0872 49 1 -0.4513 -2.2925 -2.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276839293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:19 Heat of formation + Delta-G solvation = -75.776005 kcal Electronic energy + Delta-G solvation = -31941.101582 eV Core-core repulsion = 27625.967213 eV Total energy + Delta-G solvation = -4315.134369 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -47.94806 -41.04973 -38.90601 -38.08350 -36.56665 -33.95368 -33.65532 -32.86840 -31.19295 -30.53042 -27.79283 -27.57254 -26.65878 -26.07091 -24.73827 -23.21983 -22.78776 -21.31185 -19.26016 -19.15445 -18.39277 -17.83896 -17.48685 -16.40662 -16.06838 -15.97763 -15.65270 -15.33429 -15.05210 -14.78361 -14.58270 -14.39383 -13.98562 -13.89370 -13.56067 -13.47563 -13.29708 -12.96311 -12.76627 -12.61978 -12.59090 -12.39792 -12.30889 -12.16459 -12.02905 -11.93034 -11.68070 -11.48740 -11.31452 -11.09984 -11.00683 -10.96957 -10.63195 -10.43594 -10.41576 -10.20592 -10.17625 -9.55033 -9.43512 -8.63367 -8.42150 -7.95439 -7.85488 -6.39879 -3.80291 2.56660 2.75388 3.21505 3.26864 3.31940 3.80961 3.93240 4.05765 4.18262 4.36171 4.38489 4.47657 4.63165 4.74464 4.81608 4.97317 5.04127 5.11473 5.22942 5.25910 5.28453 5.32337 5.40424 5.52349 5.54043 5.55238 5.60807 5.62225 5.68538 5.74840 5.81610 5.83297 5.85931 5.93622 5.97456 6.00158 6.06748 6.07883 6.17788 6.24425 6.31562 6.47832 7.25076 7.37968 7.57204 7.74391 8.08677 8.11819 8.64384 9.20780 9.56891 10.09270 10.77845 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.004340 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.890908 B = 6450.048308 C = 8953.616845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.109 3.891 3 C -0.157 4.157 4 F -0.199 7.199 5 C 0.530 3.470 6 O -0.517 6.517 7 N -0.632 5.632 8 C 0.107 3.893 9 C -0.087 4.087 10 C 0.121 3.879 11 C -0.102 4.102 12 C -0.113 4.113 13 C 0.053 3.947 14 N -0.512 5.512 15 C 0.047 3.953 16 C 0.441 3.559 17 O -0.570 6.570 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.082 3.918 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.029 0.971 43 H 0.074 0.926 44 H 0.090 0.910 45 H 0.045 0.955 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.029 0.971 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -10.853 14.100 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.088 3.912 3 C -0.215 4.215 4 F -0.180 7.180 5 C 0.317 3.683 6 O -0.392 6.392 7 N -0.367 5.367 8 C -0.017 4.017 9 C -0.088 4.088 10 C -0.001 4.001 11 C -0.140 4.140 12 C -0.151 4.151 13 C -0.075 4.075 14 N -0.236 5.236 15 C -0.084 4.084 16 C 0.226 3.774 17 O -0.453 6.453 18 N -0.203 5.203 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.045 4.045 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.533 -9.639 13.523 18.670 hybrid contribution -1.308 0.216 0.178 1.337 sum 7.225 -9.423 13.701 18.130 Atomic orbital electron populations 1.22447 0.91414 1.04438 1.04910 1.21151 0.96544 0.93175 0.80367 1.22173 1.02936 0.92298 1.04108 1.92879 1.90330 1.82871 1.51903 1.20225 0.79726 0.80441 0.87905 1.90752 1.39886 1.64578 1.43937 1.49437 1.56271 1.05941 1.25018 1.23216 0.96919 0.86443 0.95132 1.21839 0.96779 0.94908 0.95310 1.22961 0.96132 0.85645 0.95358 1.21427 1.01902 0.92982 0.97662 1.21568 0.98217 0.99512 0.95808 1.22105 0.96641 0.88209 1.00522 1.61460 1.39912 1.05952 1.16269 1.21855 0.91024 0.96710 0.98819 1.19778 0.85225 0.87933 0.84477 1.90550 1.30052 1.68360 1.56387 1.41869 1.14696 1.09573 1.54153 1.19635 1.01687 0.84000 1.37305 0.88045 1.25227 0.95013 1.00393 0.97224 1.69605 1.04634 1.37134 1.43117 0.85954 0.77396 0.82238 0.78872 1.19881 1.20998 1.19965 1.21818 0.92950 1.02243 0.87532 0.90244 0.89380 0.90859 0.90901 0.89479 0.90744 0.89312 0.90323 0.88386 0.90378 0.91344 0.91512 0.91490 0.90790 0.95253 0.90800 0.89206 0.93691 0.77602 0.91897 0.95339 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 8.85 37.15 0.33 -1.79 16 2 C 0.11 1.48 1.38 -91.77 -0.13 1.36 16 3 C -0.16 -1.95 8.23 37.16 0.31 -1.64 16 4 F -0.20 -2.64 16.61 2.25 0.04 -2.60 16 5 C 0.53 9.01 7.07 -10.98 -0.08 8.94 16 6 O -0.52 -10.81 16.76 5.56 0.09 -10.72 16 7 N -0.63 -9.40 3.44 -184.91 -0.64 -10.04 16 8 C 0.11 1.17 7.11 -8.03 -0.06 1.12 16 9 C -0.09 -1.03 0.95 -154.91 -0.15 -1.18 16 10 C 0.12 1.71 7.70 -8.18 -0.06 1.65 16 11 C -0.10 -0.90 5.23 -26.77 -0.14 -1.04 16 12 C -0.11 -1.07 6.08 -26.55 -0.16 -1.23 16 13 C 0.05 0.62 5.40 -3.85 -0.02 0.59 16 14 N -0.51 -7.95 4.36 -236.31 -1.03 -8.98 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.21 7.34 -10.99 -0.08 10.12 16 17 O -0.57 -15.20 14.26 5.54 0.08 -15.12 16 18 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 23 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 27 C 0.08 1.24 4.30 -3.99 -0.02 1.22 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.07 0.85 5.74 -51.93 -0.30 0.55 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.08 0.81 6.08 -51.93 -0.32 0.49 16 36 H 0.10 1.77 8.11 -51.93 -0.42 1.35 16 37 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 38 H 0.07 0.51 8.02 -51.93 -0.42 0.09 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 44 H 0.09 1.41 7.95 -51.93 -0.41 1.00 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 2.00 5.90 -51.93 -0.31 1.69 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -33.51 393.58 -8.30 -41.82 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -7.90 Total: 10.49 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.52 Total: 11.00 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -1.00 Total: -57.08 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.17 Total: -25.84 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.51 -8.30 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276839293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.957 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds