Wall clock time and date at job start Wed Apr 1 2020 01:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47392 * 2 1 4 4 F 1.39905 * 109.47310 * 120.00081 * 2 1 3 5 5 C 1.50708 * 109.47009 * 239.99945 * 2 1 3 6 6 O 1.21277 * 119.99924 * 114.99988 * 5 2 1 7 7 N 1.34771 * 119.99835 * 294.99993 * 5 2 1 8 8 C 1.47179 * 135.99918 * 359.63409 * 7 5 2 9 9 C 1.53195 * 87.73967 * 153.41546 * 8 7 5 10 10 C 1.47177 * 135.99505 * 179.97438 * 7 5 2 11 11 C 1.52601 * 114.02435 * 139.57460 * 9 8 7 12 12 C 1.53319 * 108.89729 * 186.63548 * 11 9 8 13 13 C 1.53029 * 109.16201 * 304.76868 * 12 11 9 14 14 N 1.46816 * 109.80492 * 61.05986 * 13 12 11 15 15 C 1.46898 * 111.00212 * 172.35282 * 14 13 12 16 16 C 1.50698 * 109.46846 * 190.51435 * 15 14 13 17 17 O 1.21295 * 120.00349 * 6.28177 * 16 15 14 18 18 N 1.34779 * 119.99762 * 186.27320 * 16 15 14 19 19 C 1.37104 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07997 * 120.00084 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99561 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00189 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99640 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47302 * 60.00387 * 23 21 19 25 25 H 1.48502 * 109.46810 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47098 * 299.99851 * 23 21 19 27 27 C 1.47046 * 111.14774 * 296.41672 * 14 13 12 28 28 H 1.09003 * 109.46827 * 299.99657 * 1 2 3 29 29 H 1.08992 * 109.47248 * 59.99905 * 1 2 3 30 30 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46940 * 300.00226 * 3 2 1 33 33 H 1.09003 * 109.46855 * 60.00360 * 3 2 1 34 34 H 1.09003 * 113.48955 * 268.10586 * 8 7 5 35 35 H 1.09004 * 113.48660 * 38.61715 * 8 7 5 36 36 H 1.08998 * 113.48945 * 321.38126 * 10 7 5 37 37 H 1.09003 * 113.48502 * 91.89087 * 10 7 5 38 38 H 1.09005 * 109.56710 * 306.45980 * 11 9 8 39 39 H 1.08997 * 109.57229 * 66.80556 * 11 9 8 40 40 H 1.09003 * 109.52560 * 184.86581 * 12 11 9 41 41 H 1.08997 * 109.57277 * 64.70230 * 12 11 9 42 42 H 1.09004 * 109.41373 * 300.95622 * 13 12 11 43 43 H 1.09001 * 109.36483 * 181.13108 * 13 12 11 44 44 H 1.08996 * 109.46802 * 310.51392 * 15 14 13 45 45 H 1.08996 * 109.46877 * 70.51775 * 15 14 13 46 46 H 0.96996 * 119.99972 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99676 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.49975 * 299.15527 * 27 14 13 49 49 H 1.08994 * 109.50129 * 179.04391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0323 -0.7105 -1.2305 6 8 2.6529 -0.0980 -2.0735 7 7 1.7918 -2.0264 -1.3942 8 6 1.1097 -3.0814 -0.6274 9 6 0.8556 -3.7990 -1.9568 10 6 2.1014 -3.0402 -2.4152 11 6 1.0368 -5.3128 -1.8902 12 6 0.9196 -5.8896 -3.3059 13 6 -0.4141 -5.4540 -3.9170 14 7 -0.4672 -3.9893 -4.0025 15 6 -1.6535 -3.5481 -4.7481 16 6 -1.5444 -2.0735 -5.0387 17 8 -0.5260 -1.4748 -4.7637 18 7 -2.5785 -1.4198 -5.6044 19 6 -2.4790 -0.0783 -5.8693 20 1 -1.5722 0.4547 -5.6242 21 6 -3.5453 0.5957 -6.4519 22 7 -4.6488 -0.0528 -6.7496 23 14 -3.4100 2.4237 -6.8122 24 1 -2.2812 2.6618 -7.7471 25 1 -4.6735 2.9013 -7.4291 26 1 -3.1683 3.1611 -5.5461 27 6 -0.4276 -3.3780 -2.6656 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9562 0.8901 34 1 1.7725 -3.6293 0.0423 35 1 0.1990 -2.7405 -0.1347 36 1 2.0302 -2.6646 -3.4360 37 1 3.0311 -3.5770 -2.2265 38 1 2.0203 -5.5451 -1.4817 39 1 0.2643 -5.7454 -1.2546 40 1 0.9611 -6.9779 -3.2604 41 1 1.7400 -5.5191 -3.9203 42 1 -1.2327 -5.8104 -3.2917 43 1 -0.5098 -5.8790 -4.9161 44 1 -1.7188 -4.0994 -5.6861 45 1 -2.5472 -3.7360 -4.1532 46 1 -3.3930 -1.8985 -5.8241 47 1 -5.3933 0.4178 -7.1561 48 1 -1.2891 -3.7119 -2.0872 49 1 -0.4513 -2.2925 -2.7610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276839293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:24:17 Heat of formation + Delta-G solvation = -100.222614 kcal Electronic energy + Delta-G solvation = -31942.161666 eV Core-core repulsion = 27625.967213 eV Total energy + Delta-G solvation = -4316.194453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.02717 -42.13921 -40.37715 -39.67078 -37.83852 -35.93362 -34.78000 -33.97965 -33.22754 -31.59001 -29.16771 -28.69116 -27.76422 -27.09165 -26.53182 -24.38172 -23.93179 -22.30285 -20.99306 -20.38179 -19.87474 -19.38482 -18.61601 -17.72863 -17.62262 -17.19615 -16.77990 -16.54385 -16.45539 -16.16365 -16.03049 -15.71793 -15.34637 -15.27497 -15.00554 -14.81751 -14.38707 -14.05466 -13.90383 -13.73636 -13.67151 -13.54226 -13.45528 -13.43589 -13.25199 -13.14294 -13.12334 -12.93223 -12.79609 -12.50176 -12.45319 -12.15285 -12.11140 -11.90806 -11.57877 -11.50666 -11.38200 -11.15359 -10.74734 -10.24004 -9.99315 -9.81393 -9.12212 -8.47441 -5.95300 1.29058 1.36061 1.37833 1.48436 1.63082 2.07552 2.26623 2.70284 2.96494 3.18268 3.20045 3.30066 3.43183 3.49757 3.67065 3.76496 3.87457 4.08258 4.21606 4.27544 4.32221 4.34129 4.38319 4.43959 4.45748 4.54556 4.56799 4.59200 4.62156 4.68083 4.75121 4.79525 4.85550 4.89837 4.91479 4.99547 5.03467 5.07712 5.15375 5.18818 5.39080 5.40678 5.53552 5.91260 6.11001 6.32377 6.58352 6.61736 6.84435 7.13934 7.57893 8.15675 8.69787 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.004340 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.890908 B = 6450.048308 C = 8953.616845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 C -0.157 4.157 4 F -0.192 7.192 5 C 0.512 3.488 6 O -0.576 6.576 7 N -0.639 5.639 8 C 0.112 3.888 9 C -0.074 4.074 10 C 0.114 3.886 11 C -0.093 4.093 12 C -0.111 4.111 13 C 0.051 3.949 14 N -0.534 5.534 15 C 0.060 3.940 16 C 0.439 3.561 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.329 4.329 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.986 3.014 24 H -0.276 1.276 25 H -0.266 1.266 26 H -0.273 1.273 27 C 0.084 3.916 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.045 0.955 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -13.392 16.326 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.095 3.905 3 C -0.214 4.214 4 F -0.173 7.173 5 C 0.300 3.700 6 O -0.456 6.456 7 N -0.372 5.372 8 C -0.010 4.010 9 C -0.075 4.075 10 C -0.008 4.008 11 C -0.131 4.131 12 C -0.149 4.149 13 C -0.076 4.076 14 N -0.259 5.259 15 C -0.071 4.071 16 C 0.226 3.774 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.459 4.459 20 H 0.089 0.911 21 C -0.209 4.209 22 N -0.560 5.560 23 Si 0.810 3.190 24 H -0.202 1.202 25 H -0.190 1.190 26 H -0.199 1.199 27 C -0.043 4.043 28 H 0.128 0.872 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.124 0.876 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.822 -12.252 15.769 21.447 hybrid contribution -1.065 0.930 -0.547 1.516 sum 6.757 -11.323 15.223 20.139 Atomic orbital electron populations 1.22425 0.90201 1.04931 1.05147 1.21061 0.97245 0.93146 0.79048 1.22190 1.02608 0.91827 1.04801 1.92886 1.90367 1.82817 1.51182 1.21004 0.79232 0.81190 0.88549 1.90704 1.42720 1.66017 1.46135 1.49709 1.55555 1.06050 1.25909 1.23504 0.97705 0.84839 0.94951 1.21743 0.93629 0.97300 0.94839 1.23096 0.98931 0.86080 0.92704 1.21466 1.04218 0.89639 0.97803 1.21595 0.96189 1.01361 0.95708 1.22263 0.98630 0.85075 1.01640 1.61414 1.39099 1.08830 1.16559 1.21706 0.92890 0.91954 1.00547 1.20915 0.83812 0.90413 0.82275 1.90542 1.31555 1.70137 1.57361 1.41924 1.15493 1.08936 1.55078 1.19501 1.01350 0.85640 1.39399 0.91114 1.25917 0.94395 1.04162 0.96420 1.69655 1.04897 1.38508 1.42957 0.85103 0.77855 0.77494 0.78580 1.20174 1.19047 1.19872 1.21665 0.95436 0.99193 0.88054 0.87156 0.91844 0.90320 0.91522 0.91192 0.87509 0.85667 0.89344 0.93715 0.87563 0.88839 0.89128 0.88289 0.92494 0.93443 0.90299 0.87300 0.91612 0.77089 0.91313 0.93731 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.85 71.98 0.64 -3.44 16 2 C 0.12 3.18 1.38 -11.54 -0.02 3.17 16 3 C -0.16 -3.95 8.23 71.98 0.59 -3.36 16 4 F -0.19 -4.76 16.61 44.97 0.75 -4.01 16 5 C 0.51 18.35 7.07 87.66 0.62 18.97 16 6 O -0.58 -26.25 16.76 -3.02 -0.05 -26.30 16 7 N -0.64 -19.35 3.44 -857.33 -2.95 -22.30 16 8 C 0.11 2.19 7.11 83.42 0.59 2.79 16 9 C -0.07 -1.62 0.95 -52.44 -0.05 -1.67 16 10 C 0.11 3.28 7.70 83.33 0.64 3.92 16 11 C -0.09 -1.24 5.23 30.57 0.16 -1.08 16 12 C -0.11 -1.70 6.08 30.71 0.19 -1.51 16 13 C 0.05 1.03 5.40 86.33 0.47 1.49 16 14 N -0.53 -16.29 4.36 -901.55 -3.93 -20.22 16 15 C 0.06 2.06 5.45 85.56 0.47 2.53 16 16 C 0.44 21.23 7.34 87.66 0.64 21.88 16 17 O -0.61 -34.92 14.26 -3.08 -0.04 -34.96 16 18 N -0.58 -30.10 5.29 -306.98 -1.62 -31.72 16 19 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 20 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 23 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 27 C 0.08 2.51 4.30 86.12 0.37 2.88 16 28 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 1.77 5.74 -2.39 -0.01 1.75 16 31 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 1.99 8.05 -2.39 -0.02 1.97 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.13 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.09 1.60 6.08 -2.38 -0.01 1.58 16 36 H 0.04 1.76 8.11 -2.39 -0.02 1.74 16 37 H 0.11 2.40 8.01 -2.39 -0.02 2.38 16 38 H 0.09 0.87 8.02 -2.38 -0.02 0.85 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.51 7.97 -2.39 -0.02 1.50 16 44 H 0.11 3.30 7.95 -2.39 -0.02 3.28 16 45 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 47 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 48 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.05 2.03 5.90 -2.39 -0.01 2.01 16 Total: -1.00 -80.33 393.58 1.28 -79.05 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: 0.23 Total: 35.86 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 6.59 Total: 28.11 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -8.22 Total: -124.11 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.09 Total: -61.26 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.75 Total: -4.01 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -80.33 1.28 -79.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276839293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.173 kcal (2) G-P(sol) polarization free energy of solvation -80.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds