Wall clock time and date at job start Wed Apr 1 2020 00:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41837 * 2 1 4 4 C 1.38634 * 118.41860 * 179.71261 * 3 2 1 5 5 C 1.38218 * 119.16161 * 0.54408 * 4 3 2 6 6 C 1.50700 * 119.62082 * 179.71399 * 5 4 3 7 7 N 1.46904 * 109.47396 * 94.72529 * 6 5 4 8 8 C 1.48101 * 111.00286 * 190.00028 * 7 6 5 9 9 C 1.53286 * 85.92177 * 222.87859 * 8 7 6 10 10 C 1.52477 * 128.79673 * 243.43103 * 9 8 7 11 11 C 1.52337 * 128.79883 * 163.14854 * 9 8 7 12 12 H 1.08997 * 117.51970 * 10.38954 * 11 9 8 13 13 C 1.50698 * 117.51507 * 225.31495 * 11 9 8 14 14 O 1.21279 * 120.00132 * 0.16495 * 13 11 9 15 15 N 1.34781 * 119.99962 * 180.16993 * 13 11 9 16 16 C 1.47584 * 134.48977 * 179.97438 * 15 13 11 17 17 C 1.53947 * 86.11400 * 155.35446 * 16 15 13 18 18 C 1.50699 * 113.73702 * 137.94989 * 17 16 15 19 19 H 1.07999 * 120.00803 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00186 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99863 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00044 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00037 * 22 20 18 26 26 C 1.47575 * 134.49172 * 359.97438 * 15 13 11 27 27 C 1.48102 * 110.99380 * 90.41468 * 7 6 5 28 28 N 1.31850 * 120.76732 * 359.43932 * 5 4 3 29 29 C 1.31886 * 121.72409 * 0.27457 * 28 5 4 30 30 H 1.08994 * 109.47172 * 270.02212 * 1 2 3 31 31 H 1.09000 * 109.46651 * 30.02542 * 1 2 3 32 32 H 1.08999 * 109.46710 * 150.02705 * 1 2 3 33 33 H 1.08002 * 120.78982 * 359.97438 * 3 2 1 34 34 H 1.08009 * 120.41714 * 180.28055 * 4 3 2 35 35 H 1.09006 * 109.47209 * 334.73135 * 6 5 4 36 36 H 1.08999 * 109.47473 * 214.73119 * 6 5 4 37 37 H 1.09004 * 113.79703 * 108.62642 * 8 7 6 38 38 H 1.09000 * 113.90738 * 337.14918 * 8 7 6 39 39 H 1.09005 * 117.54226 * 134.73235 * 10 9 8 40 40 H 1.08999 * 117.50989 * 349.57861 * 10 9 8 41 41 H 1.09003 * 113.77155 * 41.06216 * 16 15 13 42 42 H 1.09002 * 113.87111 * 269.66915 * 16 15 13 43 43 H 1.08995 * 113.74539 * 269.15625 * 17 16 15 44 44 H 0.96998 * 120.00124 * 180.02562 * 21 20 18 45 45 H 1.09002 * 113.76824 * 90.34958 * 26 15 13 46 46 H 1.08997 * 113.76999 * 318.94298 * 26 15 13 47 47 H 1.08998 * 113.80658 * 22.87871 * 27 7 6 48 48 H 1.09003 * 113.79879 * 251.37515 * 27 7 6 49 49 H 1.08000 * 119.62207 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1468 0.0005 7 7 6.2153 -0.2883 1.3803 8 6 7.6848 -0.1160 1.4475 9 6 7.6719 -1.3161 2.4011 10 6 8.0773 -1.3736 3.8699 11 6 8.8308 -2.2074 2.8293 12 1 9.8377 -1.8878 2.5612 13 6 8.6000 -3.6966 2.8307 14 8 7.5235 -4.1438 2.4960 15 7 9.5900 -4.5315 3.2040 16 6 9.7169 -5.9970 3.3237 17 6 11.2292 -5.7761 3.1390 18 6 12.0813 -6.6152 4.0560 19 1 11.6156 -7.2919 4.7571 20 6 13.4556 -6.5191 3.9999 21 7 14.1993 -7.2518 4.7997 22 14 14.2613 -5.3482 2.7878 23 1 14.4429 -4.0206 3.4280 24 1 13.3971 -5.2053 1.5885 25 1 15.5843 -5.8876 2.3830 26 6 10.9823 -4.3475 3.6573 27 6 6.3406 -1.7156 1.7550 28 7 3.5256 -1.1995 0.0006 29 6 2.2067 -1.1916 0.0006 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6889 2.1424 -0.0004 34 1 4.1736 2.0593 0.0109 35 1 6.1342 0.7682 -0.4338 36 1 6.0582 -1.0034 -0.5889 37 1 7.9972 0.8164 1.9180 38 1 8.1958 -0.3089 0.5043 39 1 7.4150 -1.9025 4.5552 40 1 8.5886 -0.5053 4.2854 41 1 9.2503 -6.5467 2.5062 42 1 9.4462 -6.3845 4.3059 43 1 11.5552 -5.8175 2.0998 44 1 15.1661 -7.1839 4.7605 45 1 11.0831 -4.2488 4.7381 46 1 11.5260 -3.5802 3.1062 47 1 6.4491 -2.3863 0.9027 48 1 5.5882 -2.0506 2.4690 49 1 1.6673 -2.1272 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277102484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:52 Heat of formation + Delta-G solvation = 102.170209 kcal Electronic energy + Delta-G solvation = -28408.109299 eV Core-core repulsion = 24531.460482 eV Total energy + Delta-G solvation = -3876.648817 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87070 -40.23362 -39.16499 -37.19610 -35.21546 -33.86327 -32.64055 -32.38123 -29.93000 -29.39543 -26.52221 -26.24589 -25.79660 -25.17330 -23.89370 -23.17200 -22.96168 -21.36152 -19.95959 -18.80998 -18.06263 -17.20457 -17.03852 -16.72688 -16.65634 -16.01907 -15.42648 -15.33685 -14.99231 -14.91470 -14.59013 -14.24825 -14.06938 -13.68616 -13.51412 -13.21334 -13.09901 -12.94688 -12.87961 -12.82555 -12.67778 -12.34614 -11.98156 -11.84849 -11.76394 -11.68762 -11.49323 -10.97401 -10.75438 -10.71713 -10.34581 -10.24114 -10.05403 -10.02521 -9.83008 -9.62972 -9.40544 -9.13424 -9.02854 -8.83550 -8.69587 -8.01207 -6.21771 -4.24499 0.82191 1.04346 2.85067 3.17594 3.24298 3.28658 3.29366 3.43908 3.74998 3.96176 4.16645 4.24471 4.28853 4.43094 4.48713 4.52995 4.60987 4.70266 4.78911 4.96961 5.01936 5.02845 5.11840 5.17838 5.21742 5.27078 5.35521 5.40361 5.42402 5.49896 5.59826 5.62469 5.66768 5.75505 5.83186 5.91883 5.94390 5.95845 5.99159 6.06211 6.14046 6.17350 6.18496 6.32006 6.38348 6.45363 6.58097 6.87110 7.17237 7.53539 7.80466 8.29098 8.40045 8.66448 8.81795 9.38675 10.90354 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.001924 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.593604 B =14547.397887 C =15042.926732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.145 4.145 3 C -0.079 4.079 4 C -0.152 4.152 5 C 0.138 3.862 6 C 0.068 3.932 7 N -0.475 5.475 8 C 0.046 3.954 9 C -0.139 4.139 10 C -0.111 4.111 11 C -0.166 4.166 12 H 0.121 0.879 13 C 0.554 3.446 14 O -0.555 6.555 15 N -0.637 5.637 16 C 0.118 3.882 17 C -0.013 4.013 18 C -0.513 4.513 19 H 0.080 0.920 20 C 0.077 3.923 21 N -0.893 5.893 22 Si 0.873 3.127 23 H -0.274 1.274 24 H -0.263 1.263 25 H -0.286 1.286 26 C 0.089 3.911 27 C 0.076 3.924 28 N -0.471 5.471 29 C 0.101 3.899 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.266 0.734 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.186 20.014 -9.357 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.147 4.147 3 C -0.105 4.105 4 C -0.172 4.172 5 C 0.000 4.000 6 C -0.061 4.061 7 N -0.198 5.198 8 C -0.083 4.083 9 C -0.141 4.141 10 C -0.149 4.149 11 C -0.188 4.188 12 H 0.139 0.861 13 C 0.344 3.656 14 O -0.435 6.435 15 N -0.370 5.370 16 C -0.003 4.003 17 C -0.033 4.033 18 C -0.551 4.551 19 H 0.098 0.902 20 C -0.127 4.127 21 N -0.530 5.530 22 Si 0.700 3.300 23 H -0.199 1.199 24 H -0.187 1.187 25 H -0.212 1.212 26 C -0.034 4.034 27 C -0.052 4.052 28 N -0.180 5.180 29 C -0.056 4.056 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.689 19.485 -9.192 29.869 hybrid contribution 0.733 0.985 -1.007 1.588 sum -19.956 20.470 -10.199 30.352 Atomic orbital electron populations 1.20707 0.90292 1.03001 1.02606 1.20938 0.97550 0.94343 1.01852 1.21456 0.94005 0.98088 0.96960 1.21905 0.94978 0.98961 1.01380 1.20970 0.95833 0.88444 0.94793 1.21527 0.89735 1.02613 0.92234 1.68567 1.12775 1.18768 1.19721 1.23516 0.89370 0.97503 0.97870 1.22585 0.96106 0.97654 0.97736 1.22738 1.01077 1.00617 0.90433 1.22139 0.98202 0.91266 1.07205 0.86125 1.19214 0.82638 0.86359 0.77427 1.90645 1.24604 1.77977 1.50282 1.50279 1.13597 1.09067 1.64061 1.23272 0.97163 0.79036 1.00873 1.21078 0.92249 0.91685 0.98242 1.20840 0.90599 1.23687 1.19965 0.90228 1.25004 0.97286 0.95151 0.95219 1.69894 1.05532 1.39592 1.37939 0.86899 0.79150 0.81558 0.82422 1.19917 1.18745 1.21184 1.23975 0.78282 1.01113 1.00022 1.23333 0.93897 0.88468 0.99493 1.67494 1.08186 1.31123 1.11169 1.22657 0.89696 0.97486 0.95791 0.90908 0.91460 0.91184 0.85015 0.84902 0.89431 0.91769 0.88883 0.90634 0.88003 0.87541 0.91683 0.90147 0.91899 0.92375 0.89502 0.92472 0.89954 0.89421 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.04 36.01 0.36 -0.21 16 2 C -0.14 -1.20 5.90 -104.48 -0.62 -1.81 16 3 C -0.08 -0.63 9.86 -39.27 -0.39 -1.02 16 4 C -0.15 -1.38 9.72 -39.44 -0.38 -1.76 16 5 C 0.14 1.55 6.34 -82.59 -0.52 1.03 16 6 C 0.07 0.71 5.11 -4.97 -0.03 0.69 16 7 N -0.48 -5.63 6.14 -243.08 -1.49 -7.12 16 8 C 0.05 0.47 7.96 -3.02 -0.02 0.45 16 9 C -0.14 -1.81 3.04 -154.91 -0.47 -2.28 16 10 C -0.11 -1.39 10.24 -26.92 -0.28 -1.66 16 11 C -0.17 -2.42 5.94 -92.03 -0.55 -2.96 16 12 H 0.12 1.59 8.14 -51.93 -0.42 1.17 16 13 C 0.55 10.36 7.84 -10.98 -0.09 10.27 16 14 O -0.56 -11.80 15.86 5.56 0.09 -11.71 16 15 N -0.64 -12.33 3.61 -178.43 -0.64 -12.98 16 16 C 0.12 2.38 8.39 -2.97 -0.02 2.35 16 17 C -0.01 -0.28 2.90 -90.84 -0.26 -0.55 16 18 C -0.51 -13.24 9.32 -34.44 -0.32 -13.56 16 19 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 20 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 21 N -0.89 -25.64 13.96 55.43 0.77 -24.87 16 22 Si 0.87 19.79 27.17 -169.99 -4.62 15.17 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.26 -5.72 6.25 56.52 0.35 -5.37 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 26 C 0.09 1.71 7.47 -2.97 -0.02 1.69 16 27 C 0.08 1.08 6.38 -3.01 -0.02 1.06 16 28 N -0.47 -5.94 10.27 -9.48 -0.10 -6.04 16 29 C 0.10 1.03 10.86 -17.55 -0.19 0.84 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 32 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.09 0.70 7.98 -51.93 -0.41 0.29 16 36 H 0.06 0.73 7.38 -51.93 -0.38 0.34 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 39 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 43 H 0.06 1.40 6.58 -51.93 -0.34 1.06 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.09 1.67 8.09 -51.93 -0.42 1.24 16 46 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 47 H 0.08 1.30 7.35 -51.93 -0.38 0.92 16 48 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 49 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 405.47 15.07 6.11 6.11 Total: -1.00 -31.57 405.47 -11.66 -43.24 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.87 Total: 3.70 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.92 Total: -5.50 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -1.46 Total: -51.00 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.62 Total: 15.17 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.57 -11.66 -43.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277102484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.406 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds