Wall clock time and date at job start Wed Apr 1 2020 00:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38675 * 120.41837 * 2 1 4 4 C 1.38634 * 118.41860 * 179.71261 * 3 2 1 5 5 C 1.38218 * 119.16161 * 0.54408 * 4 3 2 6 6 C 1.50700 * 119.62082 * 179.71399 * 5 4 3 7 7 N 1.46904 * 109.47396 * 94.72529 * 6 5 4 8 8 C 1.48101 * 111.00286 * 190.00028 * 7 6 5 9 9 C 1.53286 * 85.92177 * 222.87859 * 8 7 6 10 10 C 1.52477 * 128.79673 * 243.43103 * 9 8 7 11 11 C 1.52337 * 128.79883 * 163.14854 * 9 8 7 12 12 H 1.08997 * 117.51970 * 10.38954 * 11 9 8 13 13 C 1.50698 * 117.51507 * 225.31495 * 11 9 8 14 14 O 1.21279 * 120.00132 * 0.16495 * 13 11 9 15 15 N 1.34781 * 119.99962 * 180.16993 * 13 11 9 16 16 C 1.47584 * 134.48977 * 179.97438 * 15 13 11 17 17 C 1.53947 * 86.11400 * 155.35446 * 16 15 13 18 18 C 1.50699 * 113.73702 * 137.94989 * 17 16 15 19 19 H 1.07999 * 120.00803 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99889 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00186 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00030 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 89.99863 * 22 20 18 24 24 H 1.48503 * 109.47261 * 330.00044 * 22 20 18 25 25 H 1.48500 * 109.47454 * 210.00037 * 22 20 18 26 26 C 1.47575 * 134.49172 * 359.97438 * 15 13 11 27 27 C 1.48102 * 110.99380 * 90.41468 * 7 6 5 28 28 N 1.31850 * 120.76732 * 359.43932 * 5 4 3 29 29 C 1.31886 * 121.72409 * 0.27457 * 28 5 4 30 30 H 1.08994 * 109.47172 * 270.02212 * 1 2 3 31 31 H 1.09000 * 109.46651 * 30.02542 * 1 2 3 32 32 H 1.08999 * 109.46710 * 150.02705 * 1 2 3 33 33 H 1.08002 * 120.78982 * 359.97438 * 3 2 1 34 34 H 1.08009 * 120.41714 * 180.28055 * 4 3 2 35 35 H 1.09006 * 109.47209 * 334.73135 * 6 5 4 36 36 H 1.08999 * 109.47473 * 214.73119 * 6 5 4 37 37 H 1.09004 * 113.79703 * 108.62642 * 8 7 6 38 38 H 1.09000 * 113.90738 * 337.14918 * 8 7 6 39 39 H 1.09005 * 117.54226 * 134.73235 * 10 9 8 40 40 H 1.08999 * 117.50989 * 349.57861 * 10 9 8 41 41 H 1.09003 * 113.77155 * 41.06216 * 16 15 13 42 42 H 1.09002 * 113.87111 * 269.66915 * 16 15 13 43 43 H 1.08995 * 113.74539 * 269.15625 * 17 16 15 44 44 H 0.96998 * 120.00124 * 180.02562 * 21 20 18 45 45 H 1.09002 * 113.76824 * 90.34958 * 26 15 13 46 46 H 1.08997 * 113.76999 * 318.94298 * 26 15 13 47 47 H 1.08998 * 113.80658 * 22.87871 * 27 7 6 48 48 H 1.09003 * 113.79879 * 251.37515 * 27 7 6 49 49 H 1.08000 * 119.62207 * 179.97438 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5946 1.1475 0.0061 5 6 4.2256 -0.0822 0.0005 6 6 5.7312 -0.1468 0.0005 7 7 6.2153 -0.2883 1.3803 8 6 7.6848 -0.1160 1.4475 9 6 7.6719 -1.3161 2.4011 10 6 8.0773 -1.3736 3.8699 11 6 8.8308 -2.2074 2.8293 12 1 9.8377 -1.8878 2.5612 13 6 8.6000 -3.6966 2.8307 14 8 7.5235 -4.1438 2.4960 15 7 9.5900 -4.5315 3.2040 16 6 9.7169 -5.9970 3.3237 17 6 11.2292 -5.7761 3.1390 18 6 12.0813 -6.6152 4.0560 19 1 11.6156 -7.2919 4.7571 20 6 13.4556 -6.5191 3.9999 21 7 14.1993 -7.2518 4.7997 22 14 14.2613 -5.3482 2.7878 23 1 14.4429 -4.0206 3.4280 24 1 13.3971 -5.2053 1.5885 25 1 15.5843 -5.8876 2.3830 26 6 10.9823 -4.3475 3.6573 27 6 6.3406 -1.7156 1.7550 28 7 3.5256 -1.1995 0.0006 29 6 2.2067 -1.1916 0.0006 30 1 -0.3633 0.0004 1.0276 31 1 -0.3632 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6889 2.1424 -0.0004 34 1 4.1736 2.0593 0.0109 35 1 6.1342 0.7682 -0.4338 36 1 6.0582 -1.0034 -0.5889 37 1 7.9972 0.8164 1.9180 38 1 8.1958 -0.3089 0.5043 39 1 7.4150 -1.9025 4.5552 40 1 8.5886 -0.5053 4.2854 41 1 9.2503 -6.5467 2.5062 42 1 9.4462 -6.3845 4.3059 43 1 11.5552 -5.8175 2.0998 44 1 15.1661 -7.1839 4.7605 45 1 11.0831 -4.2488 4.7381 46 1 11.5260 -3.5802 3.1062 47 1 6.4491 -2.3863 0.9027 48 1 5.5882 -2.0506 2.4690 49 1 1.6673 -2.1272 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277102484.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:51 Heat of formation + Delta-G solvation = 81.512871 kcal Electronic energy + Delta-G solvation = -28409.005068 eV Core-core repulsion = 24531.460482 eV Total energy + Delta-G solvation = -3877.544587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.83502 -41.17641 -40.49477 -38.69146 -36.24570 -34.65816 -34.56756 -33.10008 -31.41756 -30.31765 -27.71535 -27.29516 -26.91321 -26.83583 -24.62235 -24.44303 -23.76931 -22.13100 -21.55084 -20.08160 -19.32778 -19.11368 -18.23482 -17.64924 -17.48440 -17.04821 -16.73419 -16.47259 -16.03044 -15.86815 -15.79645 -15.48829 -15.07493 -15.00411 -14.71944 -14.38489 -14.29874 -13.95588 -13.80515 -13.54709 -13.51753 -13.45825 -13.36318 -13.23968 -13.02572 -12.72337 -12.50614 -12.44800 -12.28397 -11.83224 -11.72207 -11.58525 -11.35579 -11.32945 -11.21744 -10.77418 -10.70020 -10.60123 -10.35528 -9.88326 -9.66688 -9.58965 -8.26616 -6.34857 0.13557 0.37859 1.41360 1.45257 1.48306 1.53934 1.86847 2.39191 2.53283 2.81441 3.04395 3.10104 3.16498 3.41342 3.50749 3.67407 3.75427 3.87006 3.94044 4.03171 4.05127 4.10619 4.20587 4.30327 4.33729 4.37446 4.47656 4.47955 4.50940 4.57663 4.64035 4.68258 4.72846 4.75538 4.76351 4.78075 4.81539 4.84894 4.90082 4.94437 4.99406 5.07825 5.16998 5.19817 5.26754 5.37775 5.39225 5.60877 5.81244 5.96834 6.28139 6.69925 6.85609 7.08981 7.16148 7.32400 8.89028 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.026026 B = 0.001924 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.593604 B =14547.397887 C =15042.926732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.142 4.142 3 C -0.082 4.082 4 C -0.152 4.152 5 C 0.110 3.890 6 C 0.070 3.930 7 N -0.476 5.476 8 C 0.059 3.941 9 C -0.141 4.141 10 C -0.097 4.097 11 C -0.176 4.176 12 H 0.145 0.855 13 C 0.548 3.452 14 O -0.589 6.589 15 N -0.639 5.639 16 C 0.115 3.885 17 C -0.018 4.018 18 C -0.516 4.516 19 H 0.038 0.962 20 C 0.020 3.980 21 N -0.945 5.945 22 Si 0.938 3.062 23 H -0.252 1.252 24 H -0.245 1.245 25 H -0.292 1.292 26 C 0.103 3.897 27 C 0.075 3.925 28 N -0.512 5.512 29 C 0.076 3.924 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.117 0.883 36 H 0.047 0.953 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.143 0.857 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.268 0.732 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.057 0.943 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.409 24.634 -10.637 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C -0.108 4.108 4 C -0.172 4.172 5 C -0.028 4.028 6 C -0.058 4.058 7 N -0.199 5.199 8 C -0.068 4.068 9 C -0.143 4.143 10 C -0.134 4.134 11 C -0.198 4.198 12 H 0.162 0.838 13 C 0.340 3.660 14 O -0.471 6.471 15 N -0.372 5.372 16 C -0.007 4.007 17 C -0.037 4.037 18 C -0.554 4.554 19 H 0.057 0.943 20 C -0.178 4.178 21 N -0.584 5.584 22 Si 0.761 3.239 23 H -0.176 1.176 24 H -0.168 1.168 25 H -0.218 1.218 26 C -0.019 4.019 27 C -0.054 4.054 28 N -0.221 5.221 29 C -0.081 4.081 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.181 0.819 34 H 0.175 0.825 35 H 0.135 0.865 36 H 0.065 0.935 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.161 0.839 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.936 24.126 -10.472 33.616 hybrid contribution 0.631 -0.571 -0.573 1.026 sum -20.306 23.555 -11.045 33.002 Atomic orbital electron populations 1.20766 0.88086 1.04177 1.03323 1.21272 0.99144 0.93794 1.00201 1.21881 0.93844 0.99202 0.95848 1.22183 0.95792 0.98872 1.00318 1.21199 0.96190 0.89097 0.96302 1.21576 0.89798 1.03233 0.91236 1.68531 1.14172 1.16352 1.20823 1.23617 0.88217 0.97298 0.97712 1.22762 0.94478 0.98251 0.98789 1.22878 0.99986 1.00745 0.89797 1.22135 0.99937 0.88112 1.09582 0.83757 1.20010 0.81739 0.88153 0.76123 1.90638 1.25951 1.79005 1.51538 1.50274 1.14096 1.08470 1.64343 1.23161 0.96389 0.80425 1.00716 1.21000 0.92165 0.93155 0.97395 1.20989 0.91281 1.23433 1.19670 0.94346 1.25879 0.97839 0.96992 0.97126 1.70049 1.05899 1.42045 1.40381 0.85854 0.77730 0.79850 0.80452 1.17604 1.16814 1.21801 1.23766 0.78163 0.99629 1.00346 1.23065 0.94271 0.89730 0.98306 1.67421 1.09543 1.32623 1.12551 1.22937 0.89399 0.98917 0.96864 0.90257 0.89758 0.90587 0.81917 0.82544 0.86462 0.93484 0.86033 0.89422 0.89542 0.83921 0.91541 0.90721 0.91621 0.92332 0.89536 0.89525 0.92489 0.92416 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.04 71.24 0.72 -0.19 16 2 C -0.14 -2.18 5.90 -19.77 -0.12 -2.30 16 3 C -0.08 -1.12 9.86 22.47 0.22 -0.90 16 4 C -0.15 -2.46 9.72 22.36 0.22 -2.24 16 5 C 0.11 2.44 6.34 42.55 0.27 2.70 16 6 C 0.07 1.41 5.11 85.56 0.44 1.84 16 7 N -0.48 -10.61 6.14 -922.96 -5.67 -16.28 16 8 C 0.06 1.03 7.96 86.17 0.69 1.71 16 9 C -0.14 -3.40 3.04 -52.35 -0.16 -3.56 16 10 C -0.10 -2.15 10.24 30.47 0.31 -1.84 16 11 C -0.18 -4.69 5.94 -11.71 -0.07 -4.76 16 12 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 13 C 0.55 20.13 7.84 87.66 0.69 20.82 16 14 O -0.59 -25.66 15.86 -3.03 -0.05 -25.71 16 15 N -0.64 -24.15 3.61 -836.81 -3.02 -27.17 16 16 C 0.12 4.71 8.39 86.48 0.73 5.44 16 17 C -0.02 -0.76 2.90 -10.88 -0.03 -0.79 16 18 C -0.52 -27.21 9.32 25.60 0.24 -26.97 16 19 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 20 C 0.02 1.08 5.47 84.65 0.46 1.54 16 21 N -0.94 -55.67 13.96 21.45 0.30 -55.37 16 22 Si 0.94 39.70 27.17 68.60 1.86 41.56 16 23 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.24 -9.56 6.25 99.48 0.62 -8.94 16 25 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.10 3.75 7.47 86.49 0.65 4.39 16 27 C 0.07 2.17 6.38 86.17 0.55 2.72 16 28 N -0.51 -13.45 10.27 -183.89 -1.89 -15.34 16 29 C 0.08 1.59 10.86 84.67 0.92 2.51 16 30 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.08 0.45 8.10 -2.39 -0.02 0.43 16 32 H 0.08 0.56 8.09 -2.39 -0.02 0.54 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.12 1.57 7.98 -2.38 -0.02 1.55 16 36 H 0.05 1.09 7.38 -2.39 -0.02 1.07 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.09 1.34 7.93 -2.39 -0.02 1.32 16 39 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.07 3.10 8.09 -2.39 -0.02 3.08 16 43 H 0.07 2.81 6.58 -2.39 -0.02 2.79 16 44 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 46 H 0.09 2.67 8.08 -2.39 -0.02 2.66 16 47 H 0.06 1.92 7.35 -2.39 -0.02 1.90 16 48 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -72.77 405.47 -0.90 -73.66 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.85 Total: 24.51 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 6.71 Total: 0.13 kcal Atomic # 7 Polarization: -103.88 SS G_CDS: -10.27 Total: -114.16 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.05 Total: -25.71 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.86 Total: 41.56 kcal Total: -72.77 -0.90 -73.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277102484.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.177 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds