Wall clock time and date at job start Wed Apr 1 2020 00:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38677 * 120.41535 * 2 1 4 4 C 1.38625 * 118.42125 * 180.22241 * 3 2 1 5 5 C 1.38223 * 119.15978 * 359.47454 * 4 3 2 6 6 C 1.50707 * 119.61967 * 180.27814 * 5 4 3 7 7 N 1.46907 * 109.46636 * 95.00279 * 6 5 4 8 8 C 1.46901 * 110.99442 * 180.02562 * 7 6 5 9 9 C 1.54889 * 129.09292 * 299.93687 * 8 7 6 10 10 C 1.57168 * 77.91657 * 180.16532 * 9 8 7 11 11 C 1.50694 * 129.24845 * 179.19169 * 10 9 8 12 12 O 1.21283 * 120.00412 * 241.28846 * 11 10 9 13 13 N 1.34776 * 120.00292 * 61.28860 * 11 10 9 14 14 C 1.47071 * 136.05138 * 359.63395 * 13 11 10 15 15 C 1.53755 * 87.88722 * 152.95734 * 14 13 11 16 16 C 1.50698 * 114.08835 * 139.77509 * 15 14 13 17 17 H 1.08001 * 120.00531 * 266.56554 * 16 15 14 18 18 C 1.37878 * 119.99871 * 86.55793 * 16 15 14 19 19 N 1.31509 * 120.00261 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47134 * 120.00329 * 20 18 16 23 23 H 1.48503 * 109.46959 * 240.00311 * 20 18 16 24 24 C 1.47063 * 136.06309 * 179.97438 * 13 11 10 25 25 C 1.54412 * 129.00834 * 180.02562 * 8 7 6 26 26 C 1.54883 * 129.08923 * 60.06653 * 8 7 6 27 27 N 1.31855 * 120.76605 * 0.26226 * 5 4 3 28 28 C 1.31884 * 121.72525 * 0.02562 * 27 5 4 29 29 H 1.08992 * 109.46991 * 270.30220 * 1 2 3 30 30 H 1.08997 * 109.47418 * 30.30826 * 1 2 3 31 31 H 1.09002 * 109.46613 * 150.30708 * 1 2 3 32 32 H 1.08003 * 120.78605 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.42343 * 179.75949 * 4 3 2 34 34 H 1.09001 * 109.47037 * 214.99852 * 6 5 4 35 35 H 1.08994 * 109.47125 * 335.00589 * 6 5 4 36 36 H 1.00902 * 110.99860 * 56.04880 * 7 6 5 37 37 H 1.09001 * 114.97721 * 291.96684 * 9 8 7 38 38 H 1.09002 * 114.97714 * 67.13142 * 9 8 7 39 39 H 1.08999 * 113.46495 * 267.68870 * 14 13 11 40 40 H 1.08994 * 113.47302 * 38.13092 * 14 13 11 41 41 H 1.09001 * 114.39868 * 272.67293 * 15 14 13 42 42 H 0.97003 * 120.00349 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.46621 * 321.86681 * 24 13 11 44 44 H 1.08996 * 113.46814 * 92.30358 * 24 13 11 45 45 H 1.09004 * 114.93727 * 293.13071 * 25 8 7 46 46 H 1.09003 * 114.93457 * 68.10140 * 25 8 7 47 47 H 1.08996 * 114.97816 * 292.85878 * 26 8 7 48 48 H 1.09003 * 114.98320 * 68.04001 * 26 8 7 49 49 H 1.07997 * 119.62350 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0047 5 6 4.2256 -0.0820 0.0018 6 6 5.7313 -0.1465 0.0031 7 7 6.2143 -0.2813 1.3839 8 6 7.6813 -0.3467 1.4243 9 6 8.6314 -1.3788 0.7676 10 6 9.6409 -0.4183 1.4945 11 6 11.1449 -0.4874 1.5586 12 8 11.7011 -0.6147 2.6289 13 7 11.8721 -0.4078 0.4267 14 6 11.5848 -0.2629 -1.0084 15 6 12.9624 0.4032 -1.1588 16 6 13.7101 -0.0043 -2.4022 17 1 14.4132 -0.8233 -2.3656 18 6 13.4965 0.6685 -3.5866 19 7 12.6407 1.6660 -3.6312 20 14 14.4228 0.1629 -5.1280 21 1 15.3200 -0.9782 -4.8146 22 1 13.4535 -0.2425 -6.1774 23 1 15.2318 1.3081 -5.6173 24 6 13.3016 -0.4337 0.0823 25 6 8.6147 -0.4879 2.6463 26 6 8.7191 0.6958 0.9394 27 7 3.5256 -1.1994 0.0072 28 6 2.2067 -1.1915 0.0062 29 1 -0.3633 0.0054 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3632 -0.8928 -0.5091 32 1 1.6888 2.1424 -0.0004 33 1 4.1734 2.0594 -0.0088 34 1 6.0586 -1.0060 -0.5818 35 1 6.1344 0.7663 -0.4354 36 1 5.8036 -1.0857 1.8338 37 1 8.5784 -2.3841 1.1855 38 1 8.6546 -1.3549 -0.3219 39 1 11.5033 -1.2148 -1.5331 40 1 10.7516 0.4076 -1.2188 41 1 12.9635 1.4794 -0.9859 42 1 12.4907 2.1395 -4.4644 43 1 13.9308 0.0914 0.8010 44 1 13.6730 -1.4307 -0.1546 45 1 8.6219 0.3686 3.3205 46 1 8.5605 -1.4492 3.1572 47 1 8.7479 0.8491 -0.1393 48 1 8.7479 1.6197 1.5170 49 1 1.6673 -2.1271 0.0112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277102521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:16 Heat of formation + Delta-G solvation = 131.642208 kcal Electronic energy + Delta-G solvation = -28474.652505 eV Core-core repulsion = 24599.281690 eV Total energy + Delta-G solvation = -3875.370815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.94072 -40.56785 -39.07763 -36.89719 -35.54431 -33.42258 -32.70843 -32.09912 -29.42844 -28.41132 -26.03320 -25.72339 -25.63147 -24.99166 -24.94506 -23.77099 -23.18338 -21.60832 -20.24237 -18.71271 -17.80915 -17.18267 -16.89467 -16.63881 -16.27309 -15.62480 -15.49188 -15.25077 -14.79445 -14.56507 -14.47198 -14.27607 -14.12502 -13.76151 -13.70351 -13.32213 -13.13019 -12.97064 -12.93087 -12.61179 -12.35215 -12.03233 -11.76332 -11.57074 -11.46665 -11.28003 -11.22448 -11.14647 -10.98360 -10.81894 -10.40823 -10.26597 -10.17313 -10.07637 -9.74401 -9.65182 -9.24778 -9.16835 -9.01885 -8.64348 -8.59803 -7.89360 -6.20925 -4.26277 0.74622 0.98451 2.93314 3.20968 3.23833 3.30305 3.33667 3.48211 3.80991 4.04988 4.24514 4.30849 4.33107 4.41780 4.43723 4.44736 4.60009 4.64038 4.67568 4.70686 5.02750 5.03597 5.10892 5.13883 5.19729 5.28759 5.42672 5.46555 5.58382 5.61440 5.64426 5.75173 5.85831 5.90093 5.92572 5.95174 5.99065 6.02452 6.11201 6.16619 6.25860 6.39236 6.42480 6.55366 6.65979 6.76878 6.79673 7.06556 7.53147 7.69358 7.77105 8.15555 8.47836 8.75778 8.78201 9.40635 10.88791 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002247 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.119600 B =12459.494599 C =14269.914344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C -0.079 4.079 4 C -0.144 4.144 5 C 0.125 3.875 6 C 0.110 3.890 7 N -0.619 5.619 8 C 0.046 3.954 9 C -0.133 4.133 10 C -0.143 4.143 11 C 0.594 3.406 12 O -0.559 6.559 13 N -0.636 5.636 14 C 0.100 3.900 15 C 0.035 3.965 16 C -0.516 4.516 17 H 0.064 0.936 18 C 0.068 3.932 19 N -0.885 5.885 20 Si 0.895 3.105 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.100 3.900 25 C -0.077 4.077 26 C -0.087 4.087 27 N -0.477 5.477 28 C 0.098 3.902 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.352 0.648 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.263 0.737 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.024 -2.014 5.918 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.143 4.143 3 C -0.105 4.105 4 C -0.164 4.164 5 C -0.013 4.013 6 C -0.019 4.019 7 N -0.248 5.248 8 C -0.047 4.047 9 C -0.174 4.174 10 C -0.147 4.147 11 C 0.382 3.618 12 O -0.439 6.439 13 N -0.368 5.368 14 C -0.022 4.022 15 C 0.016 3.984 16 C -0.554 4.554 17 H 0.082 0.918 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.195 1.195 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.021 4.021 25 C -0.116 4.116 26 C -0.125 4.125 27 N -0.186 5.186 28 C -0.059 4.059 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.172 0.828 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.101 0.899 48 H 0.098 0.902 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -22.547 -2.076 6.672 23.605 hybrid contribution -0.036 -0.369 -1.307 1.359 sum -22.583 -2.444 5.365 23.339 Atomic orbital electron populations 1.20719 0.90230 1.03137 1.02617 1.20954 0.97606 0.94334 1.01412 1.21514 0.94050 0.98217 0.96685 1.21994 0.94986 0.99231 1.00181 1.21063 0.95945 0.88576 0.95725 1.20762 0.88019 1.03005 0.90100 1.59927 1.02037 1.46848 1.15971 1.23883 0.85884 0.96795 0.98096 1.25128 0.94213 0.97719 1.00302 1.23727 0.91128 1.00251 0.99587 1.17919 0.84878 0.76360 0.82597 1.90647 1.72208 1.52185 1.28812 1.49888 1.10562 1.69339 1.07012 1.23667 1.02478 1.00015 0.76041 1.20403 0.90675 0.95890 0.91479 1.20946 1.24470 1.17147 0.92873 0.91755 1.25029 0.94892 0.94426 0.99198 1.69957 1.34263 1.20906 1.27077 0.86487 0.79795 0.78679 0.82787 1.19544 1.20909 1.20862 1.23374 0.80852 1.00791 0.97118 1.23774 0.90795 1.02347 0.94672 1.24081 0.91092 0.96119 1.01207 1.67463 1.08344 1.31171 1.11597 1.22613 0.89616 0.97498 0.96203 0.90875 0.91321 0.91165 0.84806 0.84418 0.92571 0.88825 0.82779 0.90769 0.90208 0.90889 0.92225 0.91255 0.92689 0.92313 0.90776 0.90115 0.90623 0.89931 0.90206 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.50 10.04 36.01 0.36 -0.14 16 2 C -0.14 -1.05 5.90 -104.48 -0.62 -1.67 16 3 C -0.08 -0.60 9.86 -39.28 -0.39 -0.99 16 4 C -0.14 -1.29 9.72 -39.44 -0.38 -1.67 16 5 C 0.12 1.31 6.29 -82.58 -0.52 0.79 16 6 C 0.11 1.16 5.99 -4.97 -0.03 1.13 16 7 N -0.62 -6.82 6.84 -119.07 -0.81 -7.64 16 8 C 0.05 0.57 3.75 -148.21 -0.56 0.01 16 9 C -0.13 -1.81 7.95 -24.73 -0.20 -2.01 16 10 C -0.14 -2.29 3.33 -171.00 -0.57 -2.86 16 11 C 0.59 12.02 8.19 -10.99 -0.09 11.93 16 12 O -0.56 -12.92 17.87 5.55 0.10 -12.82 16 13 N -0.64 -13.06 3.69 -185.07 -0.68 -13.75 16 14 C 0.10 2.09 7.99 -8.37 -0.07 2.02 16 15 C 0.03 0.81 3.80 -91.13 -0.35 0.46 16 16 C -0.52 -12.97 8.82 -34.44 -0.30 -13.28 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -23.74 13.26 55.43 0.74 -23.00 16 20 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.10 2.10 8.17 -8.51 -0.07 2.03 16 25 C -0.08 -1.06 7.78 -26.71 -0.21 -1.27 16 26 C -0.09 -1.21 7.84 -25.97 -0.20 -1.42 16 27 N -0.48 -5.23 10.27 -9.47 -0.10 -5.33 16 28 C 0.10 0.86 10.86 -17.55 -0.19 0.67 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.26 8.10 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.95 8.04 -51.93 -0.42 0.53 16 36 H 0.35 3.75 8.81 -39.29 -0.35 3.41 16 37 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 38 H 0.08 1.10 7.97 -51.93 -0.41 0.68 16 39 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 40 H 0.06 1.23 7.83 -51.93 -0.41 0.82 16 41 H 0.07 1.76 8.11 -51.93 -0.42 1.33 16 42 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 45 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 46 H 0.08 0.98 7.91 -51.93 -0.41 0.57 16 47 H 0.08 1.17 7.66 -51.93 -0.40 0.77 16 48 H 0.08 1.09 7.93 -51.93 -0.41 0.68 16 49 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 411.76 15.07 6.21 6.21 Total: -1.00 -29.79 411.76 -11.86 -41.65 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -7.81 Total: 4.42 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -4.47 Total: -4.59 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.86 Total: -49.72 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.10 Total: -12.82 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -29.79 -11.86 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277102521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.297 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds