Wall clock time and date at job start Wed Apr 1 2020 00:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38677 * 120.41535 * 2 1 4 4 C 1.38625 * 118.42125 * 180.22241 * 3 2 1 5 5 C 1.38223 * 119.15978 * 359.47454 * 4 3 2 6 6 C 1.50707 * 119.61967 * 180.27814 * 5 4 3 7 7 N 1.46907 * 109.46636 * 95.00279 * 6 5 4 8 8 C 1.46901 * 110.99442 * 180.02562 * 7 6 5 9 9 C 1.54889 * 129.09292 * 299.93687 * 8 7 6 10 10 C 1.57168 * 77.91657 * 180.16532 * 9 8 7 11 11 C 1.50694 * 129.24845 * 179.19169 * 10 9 8 12 12 O 1.21283 * 120.00412 * 241.28846 * 11 10 9 13 13 N 1.34776 * 120.00292 * 61.28860 * 11 10 9 14 14 C 1.47071 * 136.05138 * 359.63395 * 13 11 10 15 15 C 1.53755 * 87.88722 * 152.95734 * 14 13 11 16 16 C 1.50698 * 114.08835 * 139.77509 * 15 14 13 17 17 H 1.08001 * 120.00531 * 266.56554 * 16 15 14 18 18 C 1.37878 * 119.99871 * 86.55793 * 16 15 14 19 19 N 1.31509 * 120.00261 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99941 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47134 * 120.00329 * 20 18 16 23 23 H 1.48503 * 109.46959 * 240.00311 * 20 18 16 24 24 C 1.47063 * 136.06309 * 179.97438 * 13 11 10 25 25 C 1.54412 * 129.00834 * 180.02562 * 8 7 6 26 26 C 1.54883 * 129.08923 * 60.06653 * 8 7 6 27 27 N 1.31855 * 120.76605 * 0.26226 * 5 4 3 28 28 C 1.31884 * 121.72525 * 0.02562 * 27 5 4 29 29 H 1.08992 * 109.46991 * 270.30220 * 1 2 3 30 30 H 1.08997 * 109.47418 * 30.30826 * 1 2 3 31 31 H 1.09002 * 109.46613 * 150.30708 * 1 2 3 32 32 H 1.08003 * 120.78605 * 359.97438 * 3 2 1 33 33 H 1.08002 * 120.42343 * 179.75949 * 4 3 2 34 34 H 1.09001 * 109.47037 * 214.99852 * 6 5 4 35 35 H 1.08994 * 109.47125 * 335.00589 * 6 5 4 36 36 H 1.00902 * 110.99860 * 56.04880 * 7 6 5 37 37 H 1.09001 * 114.97721 * 291.96684 * 9 8 7 38 38 H 1.09002 * 114.97714 * 67.13142 * 9 8 7 39 39 H 1.08999 * 113.46495 * 267.68870 * 14 13 11 40 40 H 1.08994 * 113.47302 * 38.13092 * 14 13 11 41 41 H 1.09001 * 114.39868 * 272.67293 * 15 14 13 42 42 H 0.97003 * 120.00349 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.46621 * 321.86681 * 24 13 11 44 44 H 1.08996 * 113.46814 * 92.30358 * 24 13 11 45 45 H 1.09004 * 114.93727 * 293.13071 * 25 8 7 46 46 H 1.09003 * 114.93457 * 68.10140 * 25 8 7 47 47 H 1.08996 * 114.97816 * 292.85878 * 26 8 7 48 48 H 1.09003 * 114.98320 * 68.04001 * 26 8 7 49 49 H 1.07997 * 119.62350 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 -0.0047 5 6 4.2256 -0.0820 0.0018 6 6 5.7313 -0.1465 0.0031 7 7 6.2143 -0.2813 1.3839 8 6 7.6813 -0.3467 1.4243 9 6 8.6314 -1.3788 0.7676 10 6 9.6409 -0.4183 1.4945 11 6 11.1449 -0.4874 1.5586 12 8 11.7011 -0.6147 2.6289 13 7 11.8721 -0.4078 0.4267 14 6 11.5848 -0.2629 -1.0084 15 6 12.9624 0.4032 -1.1588 16 6 13.7101 -0.0043 -2.4022 17 1 14.4132 -0.8233 -2.3656 18 6 13.4965 0.6685 -3.5866 19 7 12.6407 1.6660 -3.6312 20 14 14.4228 0.1629 -5.1280 21 1 15.3200 -0.9782 -4.8146 22 1 13.4535 -0.2425 -6.1774 23 1 15.2318 1.3081 -5.6173 24 6 13.3016 -0.4337 0.0823 25 6 8.6147 -0.4879 2.6463 26 6 8.7191 0.6958 0.9394 27 7 3.5256 -1.1994 0.0072 28 6 2.2067 -1.1915 0.0062 29 1 -0.3633 0.0054 1.0276 30 1 -0.3634 0.8872 -0.5186 31 1 -0.3632 -0.8928 -0.5091 32 1 1.6888 2.1424 -0.0004 33 1 4.1734 2.0594 -0.0088 34 1 6.0586 -1.0060 -0.5818 35 1 6.1344 0.7663 -0.4354 36 1 5.8036 -1.0857 1.8338 37 1 8.5784 -2.3841 1.1855 38 1 8.6546 -1.3549 -0.3219 39 1 11.5033 -1.2148 -1.5331 40 1 10.7516 0.4076 -1.2188 41 1 12.9635 1.4794 -0.9859 42 1 12.4907 2.1395 -4.4644 43 1 13.9308 0.0914 0.8010 44 1 13.6730 -1.4307 -0.1546 45 1 8.6219 0.3686 3.3205 46 1 8.5605 -1.4492 3.1572 47 1 8.7479 0.8491 -0.1393 48 1 8.7479 1.6197 1.5170 49 1 1.6673 -2.1271 0.0112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277102521.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:15 Heat of formation + Delta-G solvation = 114.384754 kcal Electronic energy + Delta-G solvation = -28475.400844 eV Core-core repulsion = 24599.281690 eV Total energy + Delta-G solvation = -3876.119155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.10199 -41.21552 -40.74928 -38.60837 -36.33518 -34.65156 -34.07734 -32.74756 -31.15950 -29.08523 -27.57072 -26.99103 -26.81469 -26.61519 -25.82415 -24.78564 -24.19451 -22.27697 -21.88781 -20.02735 -19.20754 -18.70655 -18.06865 -17.65570 -17.29776 -17.10788 -16.61918 -16.23007 -16.15808 -15.91847 -15.51767 -15.33068 -15.25337 -14.89270 -14.75870 -14.40209 -14.19984 -13.88279 -13.84924 -13.43264 -13.36698 -13.28824 -13.19584 -13.05390 -12.77851 -12.68546 -12.55983 -12.39933 -12.24963 -12.23977 -12.18069 -11.49172 -11.36304 -11.29959 -11.05831 -10.80717 -10.69814 -10.54028 -10.40692 -9.82156 -9.61489 -9.52993 -8.16960 -6.27753 0.10910 0.36643 1.38729 1.45779 1.49642 1.59849 1.86105 2.45432 2.53619 2.98460 3.13044 3.14889 3.17805 3.26573 3.37658 3.45258 3.47212 3.73203 3.77831 3.96276 4.06506 4.11177 4.23983 4.35640 4.38055 4.46158 4.48470 4.54238 4.55392 4.62341 4.68775 4.70641 4.77746 4.78752 4.83922 4.84598 4.85350 4.90004 4.92433 4.98548 5.00478 5.08294 5.21757 5.23038 5.38420 5.58882 5.76823 5.81166 5.85029 6.17509 6.22526 6.80729 6.82927 7.03227 7.11403 7.42136 8.93141 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002247 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.119600 B =12459.494599 C =14269.914344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.137 4.137 3 C -0.084 4.084 4 C -0.152 4.152 5 C 0.104 3.896 6 C 0.114 3.886 7 N -0.613 5.613 8 C 0.075 3.925 9 C -0.125 4.125 10 C -0.173 4.173 11 C 0.590 3.410 12 O -0.592 6.592 13 N -0.637 5.637 14 C 0.118 3.882 15 C 0.024 3.976 16 C -0.526 4.526 17 H 0.067 0.933 18 C 0.022 3.978 19 N -0.917 5.917 20 Si 0.958 3.042 21 H -0.264 1.264 22 H -0.280 1.280 23 H -0.284 1.284 24 C 0.104 3.896 25 C -0.072 4.072 26 C -0.084 4.084 27 N -0.503 5.503 28 C 0.082 3.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.159 0.841 33 H 0.147 0.853 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.357 0.643 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.041 0.959 42 H 0.265 0.735 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.147 -2.479 5.599 25.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C -0.109 4.109 4 C -0.172 4.172 5 C -0.034 4.034 6 C -0.014 4.014 7 N -0.242 5.242 8 C -0.018 4.018 9 C -0.166 4.166 10 C -0.177 4.177 11 C 0.381 3.619 12 O -0.474 6.474 13 N -0.369 5.369 14 C -0.004 4.004 15 C 0.005 3.995 16 C -0.564 4.564 17 H 0.085 0.915 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.206 1.206 23 H -0.210 1.210 24 C -0.018 4.018 25 C -0.111 4.111 26 C -0.122 4.122 27 N -0.212 5.212 28 C -0.075 4.075 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.065 0.935 35 H 0.114 0.886 36 H 0.178 0.822 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -24.680 -2.549 6.355 25.612 hybrid contribution 0.585 -0.201 -1.167 1.321 sum -24.095 -2.750 5.188 24.800 Atomic orbital electron populations 1.20783 0.88022 1.04197 1.03489 1.21299 0.99192 0.93768 0.99690 1.21869 0.93680 0.99481 0.95893 1.22176 0.95912 0.99046 1.00077 1.21038 0.95682 0.89221 0.97418 1.20720 0.88656 1.02671 0.89386 1.59943 1.00718 1.46985 1.16550 1.23520 0.86438 0.95118 0.96703 1.25131 0.93240 0.98042 1.00140 1.23683 0.88942 1.02708 1.02345 1.18554 0.86574 0.75116 0.81679 1.90616 1.73402 1.53653 1.29760 1.49899 1.10350 1.69506 1.07152 1.23390 1.00969 0.99860 0.76208 1.20277 0.92516 0.94654 0.92093 1.21220 1.24523 1.17106 0.93591 0.91513 1.25748 0.95691 0.94459 1.01980 1.70058 1.35639 1.21966 1.27807 0.85509 0.78591 0.78289 0.79286 1.18856 1.20580 1.20969 1.23286 0.81513 1.00902 0.96075 1.23781 0.89808 1.02964 0.94518 1.24082 0.91025 0.96085 1.01040 1.67410 1.09557 1.31721 1.12547 1.23022 0.89193 0.98982 0.96297 0.89938 0.90241 0.90189 0.82366 0.83491 0.93477 0.88590 0.82239 0.89932 0.90362 0.90292 0.92201 0.94099 0.92636 0.92316 0.89607 0.89896 0.89778 0.90225 0.89977 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 71.24 0.71 0.04 16 2 C -0.14 -1.76 5.90 -19.77 -0.12 -1.88 16 3 C -0.08 -1.11 9.86 22.47 0.22 -0.88 16 4 C -0.15 -2.53 9.72 22.36 0.22 -2.31 16 5 C 0.10 2.09 6.29 42.55 0.27 2.36 16 6 C 0.11 2.33 5.99 85.56 0.51 2.84 16 7 N -0.61 -12.71 6.84 -530.61 -3.63 -16.34 16 8 C 0.08 1.76 3.75 -7.23 -0.03 1.74 16 9 C -0.12 -3.26 7.95 31.89 0.25 -3.01 16 10 C -0.17 -5.47 3.33 -62.86 -0.21 -5.68 16 11 C 0.59 24.02 8.19 87.66 0.72 24.73 16 12 O -0.59 -27.66 17.87 -3.04 -0.05 -27.71 16 13 N -0.64 -26.37 3.69 -857.81 -3.16 -29.53 16 14 C 0.12 4.94 7.99 83.27 0.67 5.61 16 15 C 0.02 1.13 3.80 -11.12 -0.04 1.09 16 16 C -0.53 -26.50 8.82 25.60 0.23 -26.28 16 17 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 18 C 0.02 1.11 5.46 84.66 0.46 1.57 16 19 N -0.92 -49.60 13.26 21.45 0.28 -49.32 16 20 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 C 0.10 4.40 8.17 83.18 0.68 5.08 16 25 C -0.07 -1.89 7.78 30.61 0.24 -1.65 16 26 C -0.08 -2.30 7.84 31.08 0.24 -2.05 16 27 N -0.50 -10.65 10.27 -183.88 -1.89 -12.54 16 28 C 0.08 1.33 10.86 84.67 0.92 2.25 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.36 8.10 -2.39 -0.02 0.34 16 31 H 0.08 0.37 8.09 -2.39 -0.02 0.35 16 32 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 1.87 8.04 -2.39 -0.02 1.85 16 36 H 0.36 7.09 8.81 -89.69 -0.79 6.30 16 37 H 0.08 2.03 7.91 -2.39 -0.02 2.01 16 38 H 0.08 2.08 7.97 -2.39 -0.02 2.06 16 39 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 40 H 0.06 2.48 7.83 -2.39 -0.02 2.47 16 41 H 0.04 2.15 8.11 -2.39 -0.02 2.13 16 42 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.09 3.41 8.10 -2.39 -0.02 3.39 16 45 H 0.08 2.13 7.95 -2.38 -0.02 2.11 16 46 H 0.08 2.06 7.91 -2.39 -0.02 2.04 16 47 H 0.08 2.22 7.66 -2.39 -0.02 2.20 16 48 H 0.08 2.20 7.93 -2.39 -0.02 2.18 16 49 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -63.72 411.76 -0.32 -64.04 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.16 Total: 25.28 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: 5.95 Total: 3.55 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -8.40 Total: -107.73 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Total: -63.72 -0.32 -64.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277102521.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.422 kcal (2) G-P(sol) polarization free energy of solvation -63.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds