Wall clock time and date at job start Wed Apr 1 2020 00:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38221 * 119.61838 * 2 1 4 4 C 1.38626 * 119.16156 * 179.75094 * 3 2 1 5 5 C 1.38669 * 118.42058 * 0.50725 * 4 3 2 6 6 C 1.50704 * 120.42294 * 179.70616 * 5 4 3 7 7 N 1.46897 * 109.47263 * 270.03136 * 6 5 4 8 8 C 1.48527 * 111.00398 * 71.04579 * 7 6 5 9 9 C 1.54933 * 103.23415 * 159.65070 * 8 7 6 10 10 C 1.54567 * 102.93820 * 322.53277 * 9 8 7 11 11 H 1.09000 * 117.57723 * 242.98429 * 10 9 8 12 12 C 1.52939 * 118.19768 * 87.44202 * 10 9 8 13 13 C 1.47947 * 110.99765 * 188.41583 * 7 6 5 14 14 C 1.50701 * 117.37424 * 354.64190 * 13 7 6 15 15 O 1.21281 * 120.00032 * 254.10632 * 14 13 7 16 16 N 1.34779 * 119.99702 * 74.10312 * 14 13 7 17 17 C 1.47067 * 136.05975 * 4.81037 * 16 14 13 18 18 C 1.53755 * 87.88776 * 152.96198 * 17 16 14 19 19 C 1.50707 * 114.26497 * 139.78841 * 18 17 16 20 20 H 1.07991 * 119.99830 * 266.47339 * 19 18 17 21 21 C 1.37872 * 119.99564 * 86.47843 * 19 18 17 22 22 N 1.31513 * 119.99798 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 120.00180 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47076 * 90.00517 * 23 21 19 25 25 H 1.48500 * 109.46989 * 209.99927 * 23 21 19 26 26 H 1.48499 * 109.47179 * 330.00071 * 23 21 19 27 27 C 1.47065 * 136.05540 * 185.17822 * 16 14 13 28 28 C 1.38184 * 119.16373 * 359.73744 * 5 4 3 29 29 N 1.31856 * 119.61808 * 180.26805 * 2 1 3 30 30 H 1.08992 * 109.47359 * 269.72516 * 1 2 3 31 31 H 1.08996 * 109.46963 * 29.72998 * 1 2 3 32 32 H 1.09001 * 109.46847 * 149.72456 * 1 2 3 33 33 H 1.07995 * 120.42034 * 359.97438 * 3 2 1 34 34 H 1.08007 * 120.79415 * 180.21945 * 4 3 2 35 35 H 1.09009 * 109.46828 * 30.02806 * 6 5 4 36 36 H 1.09000 * 109.47424 * 150.02668 * 6 5 4 37 37 H 1.08999 * 110.66152 * 278.08602 * 8 7 6 38 38 H 1.09000 * 110.66601 * 41.20810 * 8 7 6 39 39 H 1.08998 * 110.72384 * 80.89041 * 9 8 7 40 40 H 1.08996 * 110.72277 * 203.99173 * 9 8 7 41 41 H 1.08994 * 117.45771 * 15.86893 * 12 10 9 42 42 H 1.09000 * 117.45481 * 160.68159 * 12 10 9 43 43 H 1.09009 * 113.46407 * 267.69353 * 17 16 14 44 44 H 1.08995 * 113.46772 * 38.12857 * 17 16 14 45 45 H 1.08999 * 114.39636 * 272.67763 * 18 17 16 46 46 H 0.97002 * 119.99785 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.46879 * 321.87210 * 27 16 14 48 48 H 1.09003 * 113.46634 * 92.30324 * 27 16 14 49 49 H 1.07999 * 119.61709 * 179.97438 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2016 0.0000 4 6 3.5763 1.1906 0.0053 5 6 4.2266 -0.0342 -0.0004 6 6 5.7323 -0.0988 -0.0017 7 7 6.2206 -0.1131 -1.3871 8 6 6.0295 1.2108 -2.0326 9 6 7.0319 1.1777 -3.2135 10 6 8.2441 0.4264 -2.6175 11 1 9.1866 0.9688 -2.5421 12 6 8.2585 -1.1008 -2.6977 13 6 7.6755 -0.3777 -1.4337 14 6 8.4079 -0.4564 -0.1190 15 8 9.1281 0.4551 0.2295 16 7 8.2625 -1.5397 0.6696 17 6 7.5805 -2.8389 0.5690 18 6 8.6280 -3.4001 1.5446 19 6 8.0699 -4.3479 2.5748 20 1 7.7694 -3.9767 3.5433 21 6 7.9430 -5.6889 2.2806 22 7 7.4564 -6.5162 3.1797 23 14 8.4622 -6.3308 0.6049 24 1 9.8918 -6.7303 0.6492 25 1 7.6304 -7.5074 0.2461 26 1 8.2773 -5.2650 -0.4125 27 6 8.7106 -1.9403 2.0118 28 6 3.4766 -1.1948 -0.0056 29 7 2.1587 -1.1463 -0.0054 30 1 -0.3633 -0.0049 1.0276 31 1 -0.3633 0.8924 -0.5096 32 1 -0.3633 -0.8875 -0.5181 33 1 1.6508 2.1372 -0.0004 34 1 4.1367 2.1139 0.0089 35 1 6.1337 0.7724 0.5160 36 1 6.0575 -1.0060 0.5075 37 1 5.0080 1.3167 -2.3979 38 1 6.2769 2.0156 -1.3404 39 1 6.6151 0.6286 -4.0579 40 1 7.3098 2.1884 -3.5120 41 1 7.5633 -1.5742 -3.3909 42 1 9.2199 -1.6011 -2.5817 43 1 6.5691 -2.8307 0.9756 44 1 7.6317 -3.2801 -0.4263 45 1 9.5360 -3.7686 1.0672 46 1 7.3667 -7.4596 2.9726 47 1 9.7246 -1.6160 2.2457 48 1 7.9972 -1.6953 2.7987 49 1 3.9755 -2.1526 -0.0105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277190832.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:54 Heat of formation + Delta-G solvation = 87.108776 kcal Electronic energy + Delta-G solvation = -30470.451502 eV Core-core repulsion = 26593.149572 eV Total energy + Delta-G solvation = -3877.301930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.92136 -40.13506 -38.92257 -37.04623 -35.02321 -32.69348 -32.46299 -32.23002 -31.02834 -29.47664 -28.21943 -25.73967 -25.20332 -24.76501 -23.88630 -23.20660 -22.09684 -21.37825 -20.54377 -19.79335 -18.03930 -17.34606 -16.91983 -16.71397 -16.31451 -15.93163 -15.86449 -14.96202 -14.82496 -14.67412 -14.43114 -14.18362 -13.74462 -13.62953 -13.53261 -13.28677 -13.13104 -12.83573 -12.78487 -12.54287 -12.41356 -12.31447 -12.08983 -11.97623 -11.74287 -11.61243 -11.25351 -11.18130 -10.83615 -10.73517 -10.61280 -10.45382 -10.11647 -9.90139 -9.87047 -9.48990 -9.44762 -9.23886 -8.89428 -8.68925 -8.34661 -8.15582 -6.23038 -4.26476 0.99844 1.20560 2.75440 3.13243 3.20497 3.23396 3.30112 3.31763 3.62233 3.95780 4.23378 4.29345 4.49478 4.52714 4.58623 4.67901 4.71117 4.81571 4.91191 4.93379 5.00531 5.08537 5.17120 5.20216 5.35443 5.40567 5.45574 5.48748 5.56453 5.60168 5.68533 5.70514 5.72701 5.74067 5.84906 5.87556 5.90789 5.99061 6.00568 6.11228 6.19224 6.21146 6.27882 6.36925 6.43174 6.64792 6.66405 6.79989 7.08851 7.51045 7.96591 8.18653 8.32610 8.47787 8.80107 9.37743 10.88786 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008591 B = 0.004343 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.371373 B = 6445.029696 C = 8535.361722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.176 4.176 4 C -0.067 4.067 5 C -0.128 4.128 6 C 0.077 3.923 7 N -0.461 5.461 8 C 0.036 3.964 9 C -0.093 4.093 10 C -0.144 4.144 11 H 0.117 0.883 12 C -0.113 4.113 13 C -0.012 4.012 14 C 0.567 3.433 15 O -0.554 6.554 16 N -0.635 5.635 17 C 0.087 3.913 18 C -0.004 4.004 19 C -0.515 4.515 20 H 0.080 0.920 21 C 0.079 3.921 22 N -0.890 5.890 23 Si 0.873 3.127 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.259 1.259 27 C 0.111 3.889 28 C 0.131 3.869 29 N -0.483 5.483 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.267 0.733 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.233 15.159 -11.954 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.196 4.196 4 C -0.093 4.093 5 C -0.131 4.131 6 C -0.051 4.051 7 N -0.185 5.185 8 C -0.091 4.091 9 C -0.131 4.131 10 C -0.163 4.163 11 H 0.135 0.865 12 C -0.152 4.152 13 C -0.105 4.105 14 C 0.354 3.646 15 O -0.432 6.432 16 N -0.369 5.369 17 C -0.036 4.036 18 C -0.023 4.023 19 C -0.552 4.552 20 H 0.098 0.902 21 C -0.125 4.125 22 N -0.526 5.526 23 Si 0.700 3.300 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.183 1.183 27 C -0.010 4.010 28 C -0.027 4.027 29 N -0.192 5.192 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.672 14.450 -12.097 20.744 hybrid contribution 1.129 0.983 -0.289 1.525 sum -7.542 15.433 -12.385 21.177 Atomic orbital electron populations 1.20699 0.89023 1.03278 1.03037 1.21319 0.97011 0.88491 0.94732 1.21867 0.94615 0.99185 1.03892 1.21469 0.94386 0.97703 0.95778 1.20642 0.96103 0.94283 1.02044 1.21354 0.90487 1.03642 0.89662 1.64430 1.10060 1.27961 1.16041 1.23581 1.00118 0.89937 0.95501 1.22114 0.93251 1.00228 0.97519 1.23700 1.00091 0.93655 0.98888 0.86481 1.23794 1.01748 0.93467 0.96145 1.23178 0.88116 1.10070 0.89149 1.18900 0.81397 0.80383 0.83889 1.90668 1.40156 1.37974 1.74412 1.50006 1.52043 1.16205 1.18598 1.24028 0.99208 0.79178 1.01139 1.20783 0.94822 0.91897 0.94835 1.20736 1.42910 0.91392 1.00194 0.90218 1.24990 0.94001 0.96715 0.96761 1.69888 1.44236 1.04181 1.34310 0.86920 0.78980 0.79125 0.84956 1.20200 1.21173 1.18314 1.23181 0.99343 0.94893 0.83613 1.22726 0.88813 0.98343 0.92798 1.67595 1.09888 1.29167 1.12561 0.90458 0.90948 0.90457 0.85067 0.85376 0.93364 0.87843 0.89571 0.93318 0.90252 0.90308 0.87455 0.87783 0.89752 0.91794 0.92132 0.92304 0.91919 0.90019 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.17 36.01 0.37 -0.50 16 2 C 0.12 1.44 6.78 -82.59 -0.56 0.88 16 3 C -0.18 -1.81 9.74 -39.44 -0.38 -2.20 16 4 C -0.07 -0.75 8.96 -39.28 -0.35 -1.10 16 5 C -0.13 -1.68 5.14 -104.48 -0.54 -2.22 16 6 C 0.08 1.09 4.11 -4.98 -0.02 1.07 16 7 N -0.46 -6.28 5.22 -215.32 -1.12 -7.40 16 8 C 0.04 0.40 5.61 -1.90 -0.01 0.39 16 9 C -0.09 -0.94 6.85 -24.89 -0.17 -1.11 16 10 C -0.14 -1.79 6.65 -89.31 -0.59 -2.38 16 11 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 12 C -0.11 -1.45 10.27 -24.67 -0.25 -1.70 16 13 C -0.01 -0.18 2.79 -129.57 -0.36 -0.54 16 14 C 0.57 10.37 6.08 -10.98 -0.07 10.31 16 15 O -0.55 -11.72 17.72 5.56 0.10 -11.62 16 16 N -0.64 -11.75 2.87 -185.06 -0.53 -12.28 16 17 C 0.09 1.63 6.40 -8.37 -0.05 1.58 16 18 C 0.00 -0.08 2.97 -91.12 -0.27 -0.35 16 19 C -0.51 -12.99 9.38 -34.44 -0.32 -13.31 16 20 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 21 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -25.34 13.96 55.43 0.77 -24.57 16 23 Si 0.87 19.64 27.15 -169.99 -4.62 15.03 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.40 5.72 56.52 0.32 -5.08 16 27 C 0.11 2.14 8.18 -8.51 -0.07 2.07 16 28 C 0.13 1.85 10.86 -17.55 -0.19 1.66 16 29 N -0.48 -6.91 10.27 -9.47 -0.10 -7.01 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 35 H 0.05 0.73 7.64 -51.92 -0.40 0.33 16 36 H 0.10 1.64 4.43 -51.93 -0.23 1.41 16 37 H 0.09 0.89 7.84 -51.93 -0.41 0.48 16 38 H 0.05 0.56 7.83 -51.93 -0.41 0.16 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.08 1.57 7.17 -51.92 -0.37 1.20 16 44 H 0.06 1.18 7.15 -51.93 -0.37 0.81 16 45 H 0.06 1.29 7.03 -51.93 -0.37 0.93 16 46 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 49 H 0.16 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -30.51 394.45 -11.17 -41.68 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.68 Total: 5.69 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -3.95 Total: -5.47 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.98 Total: -51.26 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.10 Total: -11.62 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.62 Total: 15.03 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.51 -11.17 -41.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277190832.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.789 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds