Wall clock time and date at job start Wed Apr 1 2020 00:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38229 * 119.61742 * 2 1 4 4 C 1.38626 * 119.15917 * 179.79021 * 3 2 1 5 5 C 1.38678 * 118.42094 * 0.47237 * 4 3 2 6 6 C 1.50698 * 120.41858 * 179.78053 * 5 4 3 7 7 N 1.46906 * 109.47283 * 269.72585 * 6 5 4 8 8 C 1.48531 * 110.99924 * 289.31038 * 7 6 5 9 9 C 1.54928 * 103.23181 * 200.34973 * 8 7 6 10 10 C 1.54555 * 102.94212 * 37.46509 * 9 8 7 11 11 H 1.09003 * 117.26242 * 116.69349 * 10 9 8 12 12 C 1.55100 * 118.28484 * 274.94850 * 10 9 8 13 13 C 1.47943 * 111.00208 * 171.93928 * 7 6 5 14 14 C 1.50699 * 117.37183 * 5.35528 * 13 7 6 15 15 O 1.21281 * 120.00210 * 105.15454 * 14 13 7 16 16 N 1.34788 * 119.99698 * 285.15467 * 14 13 7 17 17 C 1.47581 * 134.48906 * 174.76344 * 16 14 13 18 18 C 1.53948 * 86.11346 * 204.63907 * 17 16 14 19 19 C 1.50705 * 113.74187 * 221.93854 * 18 17 16 20 20 H 1.08003 * 119.99561 * 358.07672 * 19 18 17 21 21 C 1.37871 * 120.00083 * 178.07072 * 19 18 17 22 22 N 1.31516 * 120.00206 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99941 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47055 * 60.00470 * 23 21 19 25 25 H 1.48502 * 109.47111 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.47152 * 300.00196 * 23 21 19 27 27 C 1.47573 * 134.49397 * 354.76425 * 16 14 13 28 28 C 1.38176 * 119.16171 * 359.50812 * 5 4 3 29 29 N 1.31857 * 119.62152 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47397 * 269.97908 * 1 2 3 31 31 H 1.08999 * 109.47381 * 29.97902 * 1 2 3 32 32 H 1.09002 * 109.47288 * 149.97486 * 1 2 3 33 33 H 1.07995 * 120.42255 * 0.02562 * 3 2 1 34 34 H 1.08001 * 120.79186 * 180.23315 * 4 3 2 35 35 H 1.08997 * 109.47403 * 149.72732 * 6 5 4 36 36 H 1.09001 * 109.47160 * 29.72002 * 6 5 4 37 37 H 1.09003 * 110.66450 * 318.78527 * 8 7 6 38 38 H 1.09006 * 110.66925 * 81.74358 * 8 7 6 39 39 H 1.08998 * 110.72253 * 155.82499 * 9 8 7 40 40 H 1.09001 * 110.72438 * 279.10229 * 9 8 7 41 41 H 1.09000 * 117.30255 * 343.93685 * 12 10 9 42 42 H 1.09006 * 117.88510 * 198.70181 * 12 10 9 43 43 H 1.08991 * 113.77222 * 90.33719 * 17 16 14 44 44 H 1.09007 * 113.87154 * 318.95040 * 17 16 14 45 45 H 1.09004 * 113.74374 * 90.73598 * 18 17 16 46 46 H 0.96997 * 120.00065 * 179.97438 * 22 21 19 47 47 H 1.08999 * 113.77132 * 41.04825 * 27 16 14 48 48 H 1.09009 * 113.76802 * 269.66180 * 27 16 14 49 49 H 1.07999 * 119.61518 * 180.24835 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1906 0.0044 5 6 4.2266 -0.0343 -0.0013 6 6 5.7322 -0.0988 -0.0018 7 7 6.2210 -0.1200 -1.3870 8 6 5.9101 -1.4166 -2.0414 9 6 6.9123 -1.4674 -3.2218 10 6 8.1875 -0.8342 -2.6206 11 1 9.0718 -1.4671 -2.5461 12 6 8.3201 0.7110 -2.6399 13 6 7.6940 0.0107 -1.4316 14 6 8.4294 0.0134 -0.1162 15 8 9.0519 -0.9673 0.2325 16 7 8.3953 1.1058 0.6726 17 6 8.8969 1.4215 2.0242 18 6 7.7920 2.4926 2.0701 19 6 8.2390 3.8000 2.6719 20 1 9.2454 3.9045 3.0496 21 6 7.3632 4.8626 2.7401 22 7 6.1376 4.7352 2.2804 23 14 7.9174 6.4834 3.4853 24 1 9.0680 7.0159 2.7122 25 1 6.7974 7.4574 3.4408 26 1 8.3273 6.2652 4.8959 27 6 7.8415 2.4664 0.5318 28 6 3.4766 -1.1947 -0.0009 29 7 2.1587 -1.1462 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6508 2.1373 0.0004 34 1 4.1366 2.1139 0.0083 35 1 6.0573 -1.0034 0.5120 36 1 6.1335 0.7749 0.5116 37 1 6.0824 -2.2452 -1.3545 38 1 4.8825 -1.4274 -2.4051 39 1 7.0993 -2.4976 -3.5248 40 1 6.5482 -0.8770 -4.0626 41 1 7.6530 1.2618 -3.3031 42 1 9.3146 1.1390 -2.5132 43 1 9.9068 1.8314 2.0334 44 1 8.7582 0.6161 2.7455 45 1 6.8500 2.1338 2.4850 46 1 5.5213 5.4827 2.3287 47 1 6.8593 2.4943 0.0599 48 1 8.5415 3.1834 0.1024 49 1 3.9754 -2.1526 -0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277190833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:58 Heat of formation + Delta-G solvation = 78.170513 kcal Electronic energy + Delta-G solvation = -30650.006313 eV Core-core repulsion = 26772.316791 eV Total energy + Delta-G solvation = -3877.689522 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.80596 -39.95856 -38.61717 -36.82196 -34.81879 -32.73660 -32.20955 -32.17758 -30.84018 -29.02977 -28.01107 -25.46153 -25.23802 -24.73942 -23.37123 -23.21045 -22.12240 -21.22434 -20.43858 -19.63935 -18.02592 -16.92586 -16.68477 -16.50302 -16.21022 -15.86881 -15.53109 -14.81923 -14.71566 -14.51527 -14.41986 -14.25734 -13.61306 -13.51538 -13.32662 -13.04998 -12.85626 -12.57069 -12.50304 -12.31272 -12.21365 -12.13320 -12.01938 -11.72225 -11.39690 -11.27708 -11.18124 -11.10293 -11.00854 -10.85499 -10.49000 -10.44580 -10.34814 -9.69649 -9.60442 -9.36144 -9.31372 -9.06685 -8.73252 -8.64331 -8.21832 -7.95703 -6.23702 -4.28879 1.16689 1.46207 2.91409 3.21750 3.26893 3.27481 3.31856 3.45378 3.76406 4.10496 4.29069 4.34821 4.63396 4.64831 4.81340 4.83286 4.93881 5.01458 5.07507 5.10572 5.14631 5.26346 5.32640 5.42543 5.52900 5.59186 5.60142 5.63321 5.71812 5.76732 5.81912 5.82855 5.87702 5.98710 5.99910 6.05622 6.11326 6.20379 6.22937 6.29688 6.32550 6.49099 6.53284 6.58779 6.69809 6.82736 6.85216 6.96936 7.46643 7.73366 8.06949 8.09641 8.36532 8.62395 8.73439 9.38163 10.85873 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007950 B = 0.004647 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3521.289066 B = 6023.501866 C = 8730.326667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.117 3.883 3 C -0.170 4.170 4 C -0.041 4.041 5 C -0.125 4.125 6 C 0.074 3.926 7 N -0.463 5.463 8 C 0.034 3.966 9 C -0.091 4.091 10 C -0.152 4.152 11 H 0.118 0.882 12 C -0.114 4.114 13 C -0.002 4.002 14 C 0.555 3.445 15 O -0.560 6.560 16 N -0.631 5.631 17 C 0.101 3.899 18 C 0.035 3.965 19 C -0.521 4.521 20 H 0.062 0.938 21 C 0.071 3.929 22 N -0.884 5.884 23 Si 0.894 3.106 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C 0.107 3.893 28 C 0.105 3.895 29 N -0.489 5.489 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.047 0.953 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.264 0.736 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.926 -7.498 -9.568 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.021 4.021 3 C -0.189 4.189 4 C -0.067 4.067 5 C -0.128 4.128 6 C -0.053 4.053 7 N -0.186 5.186 8 C -0.093 4.093 9 C -0.129 4.129 10 C -0.171 4.171 11 H 0.136 0.864 12 C -0.152 4.152 13 C -0.095 4.095 14 C 0.342 3.658 15 O -0.439 6.439 16 N -0.364 5.364 17 C -0.020 4.020 18 C 0.016 3.984 19 C -0.559 4.559 20 H 0.080 0.920 21 C -0.133 4.133 22 N -0.521 5.521 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.014 4.014 28 C -0.053 4.053 29 N -0.199 5.199 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.152 0.848 34 H 0.161 0.839 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.531 -8.427 -9.760 14.454 hybrid contribution 1.200 1.135 0.875 1.869 sum -5.331 -7.292 -8.884 12.670 Atomic orbital electron populations 1.20671 0.89165 1.03108 1.02878 1.21245 0.96814 0.88552 0.95472 1.21966 0.94929 0.99127 1.02919 1.21646 0.94145 0.98472 0.92457 1.20624 0.96053 0.94289 1.01817 1.21411 0.90734 1.03721 0.89477 1.64498 1.06764 1.31321 1.16046 1.23593 0.99964 0.90273 0.95443 1.22083 0.92614 1.00716 0.97510 1.24051 1.00073 0.93437 0.99570 0.86383 1.23516 1.01410 0.92955 0.97368 1.22631 0.88326 1.08942 0.89622 1.19212 0.80545 0.82683 0.83370 1.90647 1.44792 1.34851 1.73597 1.50535 1.55530 1.12253 1.18126 1.23550 1.00193 0.97323 0.80968 1.20497 0.94014 0.93220 0.90673 1.20899 0.98642 0.95519 1.40848 0.91959 1.24974 0.94682 0.98941 0.94682 1.69915 1.04920 1.32005 1.45271 0.86623 0.78286 0.83021 0.79914 1.20094 1.21207 1.20108 1.23766 0.97219 0.78393 1.02054 1.22531 0.89296 0.97704 0.95726 1.67477 1.09637 1.29421 1.13356 0.90623 0.90863 0.90803 0.84841 0.83875 0.93510 0.87147 0.93285 0.89584 0.90369 0.90334 0.87542 0.87859 0.90678 0.92109 0.91957 0.92583 0.91358 0.90616 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.00 0.37 -0.61 16 2 C 0.12 1.56 6.78 -82.59 -0.56 1.00 16 3 C -0.17 -2.27 9.74 -39.44 -0.38 -2.66 16 4 C -0.04 -0.62 9.86 -39.28 -0.39 -1.01 16 5 C -0.13 -1.90 5.13 -104.48 -0.54 -2.43 16 6 C 0.07 1.20 4.11 -4.97 -0.02 1.18 16 7 N -0.46 -6.94 5.20 -217.68 -1.13 -8.07 16 8 C 0.03 0.44 5.60 -1.90 -0.01 0.43 16 9 C -0.09 -1.02 6.87 -24.90 -0.17 -1.19 16 10 C -0.15 -2.02 6.87 -88.18 -0.61 -2.63 16 11 H 0.12 1.61 8.14 -51.93 -0.42 1.18 16 12 C -0.11 -1.54 10.14 -25.59 -0.26 -1.80 16 13 C 0.00 -0.04 2.52 -131.63 -0.33 -0.37 16 14 C 0.56 10.72 5.97 -10.98 -0.07 10.65 16 15 O -0.56 -12.43 17.68 5.56 0.10 -12.33 16 16 N -0.63 -12.32 2.81 -178.45 -0.50 -12.82 16 17 C 0.10 2.03 8.39 -2.97 -0.02 2.01 16 18 C 0.04 0.78 3.58 -90.85 -0.32 0.45 16 19 C -0.52 -12.73 8.78 -34.44 -0.30 -13.03 16 20 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.88 -22.74 13.29 55.43 0.74 -22.01 16 23 Si 0.89 19.52 29.54 -169.99 -5.02 14.49 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C 0.11 2.16 7.28 -2.98 -0.02 2.14 16 28 C 0.11 1.51 9.94 -17.55 -0.17 1.34 16 29 N -0.49 -7.21 10.27 -9.48 -0.10 -7.31 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.05 0.80 7.63 -51.93 -0.40 0.40 16 36 H 0.11 2.03 4.42 -51.93 -0.23 1.80 16 37 H 0.05 0.64 7.84 -51.93 -0.41 0.24 16 38 H 0.09 1.04 7.82 -51.93 -0.41 0.63 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 44 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 47 H 0.07 1.38 7.05 -51.93 -0.37 1.01 16 48 H 0.08 1.54 8.10 -51.92 -0.42 1.12 16 49 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -28.30 399.90 -11.49 -39.78 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.68 Total: 7.09 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.91 Total: -4.86 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.99 Total: -50.21 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.10 Total: -12.33 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.30 -11.49 -39.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277190833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.954 kcal (2) G-P(sol) polarization free energy of solvation -28.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds