Wall clock time and date at job start Wed Apr 1 2020 00:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38229 * 119.62054 * 2 1 4 4 C 1.38617 * 119.16467 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79182 * 179.97438 * 4 3 2 6 6 N 1.46910 * 109.47195 * 90.00319 * 5 4 3 7 7 C 1.48530 * 110.99569 * 281.90245 * 6 5 4 8 8 C 1.54934 * 103.23041 * 200.34736 * 7 6 5 9 9 C 1.54565 * 102.94016 * 37.46766 * 8 7 6 10 10 H 1.09000 * 117.26089 * 116.68969 * 9 8 7 11 11 C 1.55094 * 118.28371 * 274.94655 * 9 8 7 12 12 C 1.47935 * 111.00140 * 164.53393 * 6 5 4 13 13 C 1.50704 * 117.37500 * 5.35035 * 12 6 5 14 14 O 1.21278 * 120.00321 * 250.84242 * 13 12 6 15 15 N 1.34781 * 119.99911 * 70.55925 * 13 12 6 16 16 C 1.47067 * 136.05403 * 355.09161 * 15 13 12 17 17 C 1.53752 * 87.88754 * 152.96246 * 16 15 13 18 18 C 1.50690 * 114.27106 * 139.79189 * 17 16 15 19 19 H 1.08001 * 120.00093 * 266.47297 * 18 17 16 20 20 C 1.37880 * 120.00259 * 86.47107 * 18 17 16 21 21 N 1.31513 * 119.99607 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46789 * 120.00317 * 22 20 18 25 25 H 1.48496 * 109.47118 * 240.00204 * 22 20 18 26 26 C 1.47062 * 136.05840 * 175.45856 * 15 13 12 27 27 C 1.38672 * 118.42076 * 0.24983 * 4 3 2 28 28 C 1.38187 * 119.16375 * 359.52709 * 27 4 3 29 29 N 1.31856 * 119.61800 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.46801 * 89.99960 * 1 2 3 31 31 H 1.08999 * 109.46848 * 210.00062 * 1 2 3 32 32 H 1.09005 * 109.46921 * 330.00108 * 1 2 3 33 33 H 1.08008 * 120.41714 * 359.97438 * 3 2 1 34 34 H 1.08993 * 109.47513 * 330.00328 * 5 4 3 35 35 H 1.09000 * 109.47231 * 209.99683 * 5 4 3 36 36 H 1.09000 * 110.67030 * 318.78780 * 7 6 5 37 37 H 1.09006 * 110.66834 * 81.91359 * 7 6 5 38 38 H 1.08997 * 110.72041 * 155.82633 * 8 7 6 39 39 H 1.08996 * 110.72378 * 279.10757 * 8 7 6 40 40 H 1.09002 * 117.30721 * 343.94589 * 11 9 8 41 41 H 1.08993 * 117.88781 * 198.70026 * 11 9 8 42 42 H 1.09004 * 113.46583 * 267.69125 * 16 15 13 43 43 H 1.08995 * 113.46821 * 38.12679 * 16 15 13 44 44 H 1.09003 * 114.39227 * 272.67627 * 17 16 15 45 45 H 0.97005 * 119.99618 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.46371 * 321.86188 * 26 15 13 47 47 H 1.08997 * 113.47158 * 92.30674 * 26 15 13 48 48 H 1.07996 * 120.42456 * 179.74775 * 27 4 3 49 49 H 1.07999 * 119.61951 * 180.20284 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.3581 2.4790 0.0000 6 7 4.6117 2.8986 1.3849 7 6 3.4036 3.5240 1.9811 8 6 3.9766 4.3469 3.1622 9 6 5.3089 4.8864 2.5939 10 1 5.4085 5.9673 2.4955 11 6 6.5651 3.9809 2.6808 12 6 5.6692 3.9315 1.4407 13 6 6.1973 4.4542 0.1296 14 8 7.3181 4.1640 -0.2317 15 7 5.4220 5.2394 -0.6443 16 6 4.0327 5.7204 -0.6085 17 6 4.4964 6.9464 -1.4121 18 6 3.5342 7.3829 -2.4865 19 1 3.6522 7.0201 -3.4969 20 6 2.5031 8.2454 -2.1798 21 7 2.3598 8.6875 -0.9495 22 14 1.3108 8.7870 -3.5119 23 1 1.6875 8.1531 -4.8009 24 1 -0.0665 8.3736 -3.1413 25 1 1.3632 10.2644 -3.6523 26 6 5.5911 5.9870 -1.8994 27 6 4.2266 -0.0342 -0.0043 28 6 3.4767 -1.1948 0.0006 29 7 2.1587 -1.1463 -0.0005 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6508 2.1374 -0.0004 34 1 3.7860 3.2510 -0.5145 35 1 5.3077 2.3276 -0.5133 36 1 2.9125 4.1769 1.2597 37 1 2.7141 2.7610 2.3427 38 1 3.3074 5.1675 3.4209 39 1 4.1567 3.7075 4.0263 40 1 6.5240 3.1329 3.3644 41 1 7.5420 4.4529 2.5765 42 1 3.3379 5.0815 -1.1537 43 1 3.6834 5.9639 0.3949 44 1 4.8644 7.7716 -0.8022 45 1 1.6346 9.2946 -0.7338 46 1 6.5695 6.4578 -1.9957 47 1 5.3072 5.4185 -2.7849 48 1 5.3056 -0.0805 -0.0081 49 1 3.9755 -2.1527 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277323960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:08 Heat of formation + Delta-G solvation = 80.100744 kcal Electronic energy + Delta-G solvation = -30643.280896 eV Core-core repulsion = 26765.675075 eV Total energy + Delta-G solvation = -3877.605821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.90254 -40.11554 -38.65105 -37.01562 -34.95309 -32.85445 -32.78896 -31.86761 -30.61053 -29.17277 -27.72221 -25.99565 -25.53853 -25.15931 -23.35166 -23.06446 -22.21230 -21.02681 -20.40539 -19.98419 -17.91871 -17.26435 -16.63630 -16.54256 -16.33588 -15.77789 -15.53638 -15.03339 -14.82626 -14.68670 -14.53578 -14.38733 -13.85635 -13.54666 -13.37580 -13.14555 -12.91497 -12.61693 -12.54453 -12.46525 -12.32520 -12.27174 -11.80726 -11.74492 -11.62333 -11.42753 -11.28915 -11.07828 -11.01328 -10.93416 -10.53199 -10.48295 -10.33380 -9.67964 -9.54542 -9.53101 -9.35716 -9.07901 -8.96452 -8.69057 -8.37014 -8.03672 -6.28933 -4.34799 1.08723 1.17883 2.75727 3.15247 3.21875 3.25667 3.29974 3.59535 3.66477 3.97847 4.24299 4.24407 4.53225 4.55937 4.62468 4.73786 4.83293 4.96686 5.02662 5.04262 5.09767 5.22551 5.32757 5.34310 5.41099 5.46627 5.48355 5.59625 5.64854 5.70289 5.72864 5.82117 5.88753 5.90551 5.92120 6.00201 6.03122 6.04096 6.10209 6.21437 6.30024 6.32546 6.37023 6.48071 6.65465 6.67730 6.73821 6.87390 7.42784 7.68536 7.93912 8.05930 8.32480 8.58929 8.69799 9.32853 10.80585 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004123 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.897796 B = 6789.231780 C = 8467.259980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.125 3.875 3 C -0.163 4.163 4 C -0.019 4.019 5 C 0.073 3.927 6 N -0.462 5.462 7 C 0.029 3.971 8 C -0.092 4.092 9 C -0.159 4.159 10 H 0.120 0.880 11 C -0.101 4.101 12 C -0.005 4.005 13 C 0.561 3.439 14 O -0.554 6.554 15 N -0.637 5.637 16 C 0.098 3.902 17 C 0.038 3.962 18 C -0.519 4.519 19 H 0.064 0.936 20 C 0.071 3.929 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.099 3.901 27 C -0.159 4.159 28 C 0.100 3.900 29 N -0.490 5.490 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.264 0.736 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.133 0.867 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 -12.413 7.025 14.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.013 4.013 3 C -0.183 4.183 4 C -0.027 4.027 5 C -0.055 4.055 6 N -0.186 5.186 7 C -0.098 4.098 8 C -0.130 4.130 9 C -0.179 4.179 10 H 0.138 0.862 11 C -0.139 4.139 12 C -0.098 4.098 13 C 0.348 3.652 14 O -0.432 6.432 15 N -0.371 5.371 16 C -0.025 4.025 17 C 0.019 3.981 18 C -0.557 4.557 19 H 0.082 0.918 20 C -0.133 4.133 21 N -0.521 5.521 22 Si 0.721 3.279 23 H -0.195 1.195 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.023 4.023 27 C -0.180 4.180 28 C -0.057 4.057 29 N -0.200 5.200 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.151 0.849 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.814 -13.819 7.330 15.664 hybrid contribution -0.414 1.741 -1.206 2.158 sum -1.228 -12.078 6.125 13.598 Atomic orbital electron populations 1.20705 0.88903 1.03353 1.03092 1.21235 0.96924 0.88197 0.94933 1.21902 0.94213 0.99437 1.02766 1.20089 0.93409 0.95006 0.94221 1.21375 1.00177 0.93729 0.90200 1.64515 1.04757 1.32432 1.16896 1.23717 0.92722 0.97065 0.96290 1.22096 0.94197 0.99181 0.97480 1.24159 0.95532 0.97686 1.00476 0.86182 1.23445 0.94119 1.00518 0.95813 1.22685 1.00744 0.96603 0.89720 1.19043 0.84832 0.77213 0.84066 1.90650 1.20290 1.58588 1.73654 1.50060 1.15433 1.46719 1.24842 1.23715 0.81257 0.96636 1.00850 1.20371 0.91610 0.91159 0.94948 1.20932 1.11404 1.28295 0.95034 0.91775 1.25010 0.97640 0.95171 0.95511 1.69953 1.31550 1.32350 1.18214 0.86502 0.80732 0.78630 0.82011 1.19528 1.20843 1.20772 1.23392 1.00704 0.92226 0.85982 1.22023 1.01564 0.92707 1.01687 1.22671 0.89377 0.98229 0.95425 1.67482 1.10054 1.29420 1.13084 0.90449 0.90621 0.90666 0.84961 0.91602 0.89523 0.92222 0.89603 0.89896 0.90461 0.87700 0.87553 0.91082 0.92110 0.91302 0.92628 0.92324 0.90840 0.84865 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.17 36.01 0.37 -0.60 16 2 C 0.12 1.53 6.78 -82.58 -0.56 0.97 16 3 C -0.16 -2.04 8.94 -39.44 -0.35 -2.39 16 4 C -0.02 -0.25 5.28 -104.32 -0.55 -0.80 16 5 C 0.07 1.07 4.15 -4.97 -0.02 1.05 16 6 N -0.46 -6.59 5.15 -217.67 -1.12 -7.71 16 7 C 0.03 0.37 5.97 -1.90 -0.01 0.36 16 8 C -0.09 -1.08 6.87 -24.89 -0.17 -1.25 16 9 C -0.16 -2.18 7.00 -88.17 -0.62 -2.79 16 10 H 0.12 1.74 8.14 -51.93 -0.42 1.31 16 11 C -0.10 -1.36 10.09 -25.59 -0.26 -1.62 16 12 C 0.00 -0.07 2.57 -131.63 -0.34 -0.41 16 13 C 0.56 10.74 5.47 -10.98 -0.06 10.68 16 14 O -0.55 -12.26 17.81 5.56 0.10 -12.16 16 15 N -0.64 -12.26 3.31 -185.06 -0.61 -12.87 16 16 C 0.10 1.91 6.20 -8.37 -0.05 1.86 16 17 C 0.04 0.85 3.79 -91.13 -0.35 0.51 16 18 C -0.52 -12.63 8.83 -34.44 -0.30 -12.93 16 19 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 20 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.88 -22.95 13.26 55.43 0.74 -22.22 16 22 Si 0.89 19.38 29.54 -169.99 -5.02 14.36 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.10 1.98 8.18 -8.51 -0.07 1.91 16 27 C -0.16 -1.98 9.82 -39.44 -0.39 -2.36 16 28 C 0.10 1.18 11.18 -17.55 -0.20 0.98 16 29 N -0.49 -6.45 10.27 -9.47 -0.10 -6.55 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.59 8.08 -51.93 -0.42 0.18 16 33 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.07 1.04 5.10 -51.93 -0.26 0.77 16 35 H 0.09 1.44 7.00 -51.93 -0.36 1.07 16 36 H 0.06 0.83 6.19 -51.93 -0.32 0.51 16 37 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.07 1.39 7.12 -51.93 -0.37 1.02 16 43 H 0.06 1.20 7.37 -51.93 -0.38 0.81 16 44 H 0.07 1.68 8.11 -51.93 -0.42 1.26 16 45 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 48 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 49 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -28.61 397.90 -11.62 -40.23 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.57 Total: 6.09 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -4.03 Total: -5.17 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -1.10 Total: -49.35 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.10 Total: -12.16 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.61 -11.62 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277323960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.332 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds