Wall clock time and date at job start Wed Apr 1 2020 00:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38229 * 119.62054 * 2 1 4 4 C 1.38617 * 119.16467 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.79182 * 179.97438 * 4 3 2 6 6 N 1.46910 * 109.47195 * 90.00319 * 5 4 3 7 7 C 1.48530 * 110.99569 * 281.90245 * 6 5 4 8 8 C 1.54934 * 103.23041 * 200.34736 * 7 6 5 9 9 C 1.54565 * 102.94016 * 37.46766 * 8 7 6 10 10 H 1.09000 * 117.26089 * 116.68969 * 9 8 7 11 11 C 1.55094 * 118.28371 * 274.94655 * 9 8 7 12 12 C 1.47935 * 111.00140 * 164.53393 * 6 5 4 13 13 C 1.50704 * 117.37500 * 5.35035 * 12 6 5 14 14 O 1.21278 * 120.00321 * 250.84242 * 13 12 6 15 15 N 1.34781 * 119.99911 * 70.55925 * 13 12 6 16 16 C 1.47067 * 136.05403 * 355.09161 * 15 13 12 17 17 C 1.53752 * 87.88754 * 152.96246 * 16 15 13 18 18 C 1.50690 * 114.27106 * 139.79189 * 17 16 15 19 19 H 1.08001 * 120.00093 * 266.47297 * 18 17 16 20 20 C 1.37880 * 120.00259 * 86.47107 * 18 17 16 21 21 N 1.31513 * 119.99607 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00073 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46789 * 120.00317 * 22 20 18 25 25 H 1.48496 * 109.47118 * 240.00204 * 22 20 18 26 26 C 1.47062 * 136.05840 * 175.45856 * 15 13 12 27 27 C 1.38672 * 118.42076 * 0.24983 * 4 3 2 28 28 C 1.38187 * 119.16375 * 359.52709 * 27 4 3 29 29 N 1.31856 * 119.61800 * 180.02562 * 2 1 3 30 30 H 1.08992 * 109.46801 * 89.99960 * 1 2 3 31 31 H 1.08999 * 109.46848 * 210.00062 * 1 2 3 32 32 H 1.09005 * 109.46921 * 330.00108 * 1 2 3 33 33 H 1.08008 * 120.41714 * 359.97438 * 3 2 1 34 34 H 1.08993 * 109.47513 * 330.00328 * 5 4 3 35 35 H 1.09000 * 109.47231 * 209.99683 * 5 4 3 36 36 H 1.09000 * 110.67030 * 318.78780 * 7 6 5 37 37 H 1.09006 * 110.66834 * 81.91359 * 7 6 5 38 38 H 1.08997 * 110.72041 * 155.82633 * 8 7 6 39 39 H 1.08996 * 110.72378 * 279.10757 * 8 7 6 40 40 H 1.09002 * 117.30721 * 343.94589 * 11 9 8 41 41 H 1.08993 * 117.88781 * 198.70026 * 11 9 8 42 42 H 1.09004 * 113.46583 * 267.69125 * 16 15 13 43 43 H 1.08995 * 113.46821 * 38.12679 * 16 15 13 44 44 H 1.09003 * 114.39227 * 272.67627 * 17 16 15 45 45 H 0.97005 * 119.99618 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.46371 * 321.86188 * 26 15 13 47 47 H 1.08997 * 113.47158 * 92.30674 * 26 15 13 48 48 H 1.07996 * 120.42456 * 179.74775 * 27 4 3 49 49 H 1.07999 * 119.61951 * 180.20284 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.3581 2.4790 0.0000 6 7 4.6117 2.8986 1.3849 7 6 3.4036 3.5240 1.9811 8 6 3.9766 4.3469 3.1622 9 6 5.3089 4.8864 2.5939 10 1 5.4085 5.9673 2.4955 11 6 6.5651 3.9809 2.6808 12 6 5.6692 3.9315 1.4407 13 6 6.1973 4.4542 0.1296 14 8 7.3181 4.1640 -0.2317 15 7 5.4220 5.2394 -0.6443 16 6 4.0327 5.7204 -0.6085 17 6 4.4964 6.9464 -1.4121 18 6 3.5342 7.3829 -2.4865 19 1 3.6522 7.0201 -3.4969 20 6 2.5031 8.2454 -2.1798 21 7 2.3598 8.6875 -0.9495 22 14 1.3108 8.7870 -3.5119 23 1 1.6875 8.1531 -4.8009 24 1 -0.0665 8.3736 -3.1413 25 1 1.3632 10.2644 -3.6523 26 6 5.5911 5.9870 -1.8994 27 6 4.2266 -0.0342 -0.0043 28 6 3.4767 -1.1948 0.0006 29 7 2.1587 -1.1463 -0.0005 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6508 2.1374 -0.0004 34 1 3.7860 3.2510 -0.5145 35 1 5.3077 2.3276 -0.5133 36 1 2.9125 4.1769 1.2597 37 1 2.7141 2.7610 2.3427 38 1 3.3074 5.1675 3.4209 39 1 4.1567 3.7075 4.0263 40 1 6.5240 3.1329 3.3644 41 1 7.5420 4.4529 2.5765 42 1 3.3379 5.0815 -1.1537 43 1 3.6834 5.9639 0.3949 44 1 4.8644 7.7716 -0.8022 45 1 1.6346 9.2946 -0.7338 46 1 6.5695 6.4578 -1.9957 47 1 5.3072 5.4185 -2.7849 48 1 5.3056 -0.0805 -0.0081 49 1 3.9755 -2.1527 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277323960.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:07 Heat of formation + Delta-G solvation = 64.190753 kcal Electronic energy + Delta-G solvation = -30643.970805 eV Core-core repulsion = 26765.675075 eV Total energy + Delta-G solvation = -3878.295730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.16375 -41.15652 -40.09417 -38.62915 -36.02608 -34.67992 -33.73172 -32.89357 -31.81589 -30.73610 -28.55513 -27.38293 -27.02173 -26.80121 -24.51045 -24.00750 -23.60462 -22.04107 -21.61397 -21.44798 -19.37170 -18.90852 -18.13295 -17.58790 -17.47703 -17.14592 -16.69201 -16.51280 -16.14156 -16.00413 -15.86422 -15.33276 -15.25244 -14.68739 -14.53321 -14.25963 -14.20531 -14.07720 -13.90547 -13.58764 -13.34883 -13.26250 -13.23601 -13.06778 -12.83591 -12.78969 -12.67047 -12.64971 -12.32956 -12.23805 -12.07879 -11.84465 -11.51352 -11.25530 -11.11978 -10.72518 -10.60907 -10.50364 -10.47588 -9.87225 -9.70271 -9.53451 -8.19683 -6.30619 0.16389 0.18831 1.30358 1.43547 1.48324 1.57568 1.77046 2.40554 2.43726 2.58821 2.93756 3.10138 3.30247 3.40188 3.47462 3.53736 3.57454 3.77808 3.87717 4.09712 4.11459 4.16516 4.21439 4.25328 4.30508 4.33757 4.41219 4.42809 4.55616 4.61024 4.62615 4.65315 4.70570 4.71971 4.78084 4.78967 4.80567 4.84923 4.95884 4.98796 5.03328 5.10380 5.17645 5.20544 5.34727 5.54249 5.61701 5.70509 5.77317 5.77539 6.18578 6.74501 6.77637 7.01181 7.01337 7.39685 8.90095 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008770 B = 0.004123 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3191.897796 B = 6789.231780 C = 8467.259980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.168 4.168 4 C -0.030 4.030 5 C 0.083 3.917 6 N -0.454 5.454 7 C 0.029 3.971 8 C -0.084 4.084 9 C -0.150 4.150 10 H 0.109 0.891 11 C -0.087 4.087 12 C -0.028 4.028 13 C 0.560 3.440 14 O -0.588 6.588 15 N -0.635 5.635 16 C 0.121 3.879 17 C 0.029 3.971 18 C -0.530 4.530 19 H 0.064 0.936 20 C 0.029 3.971 21 N -0.913 5.913 22 Si 0.953 3.047 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.283 1.283 26 C 0.102 3.898 27 C -0.167 4.167 28 C 0.100 3.900 29 N -0.507 5.507 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.265 0.735 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.140 0.860 49 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.338 -13.628 7.865 15.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.189 4.189 4 C -0.038 4.038 5 C -0.044 4.044 6 N -0.178 5.178 7 C -0.097 4.097 8 C -0.121 4.121 9 C -0.169 4.169 10 H 0.127 0.873 11 C -0.125 4.125 12 C -0.121 4.121 13 C 0.349 3.651 14 O -0.468 6.468 15 N -0.368 5.368 16 C -0.001 4.001 17 C 0.010 3.990 18 C -0.568 4.568 19 H 0.082 0.918 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.779 3.221 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.209 1.209 26 C -0.020 4.020 27 C -0.187 4.187 28 C -0.056 4.056 29 N -0.218 5.218 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.157 0.843 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.157 0.843 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.072 -15.039 8.173 17.241 hybrid contribution 0.039 2.119 -1.492 2.592 sum -2.032 -12.920 6.681 14.686 Atomic orbital electron populations 1.20781 0.86951 1.04315 1.03843 1.21681 0.98318 0.87823 0.94071 1.21988 0.93876 1.00018 1.02973 1.20050 0.93839 0.94587 0.95336 1.21175 0.98827 0.94227 0.90210 1.64657 1.05027 1.31680 1.16413 1.23774 0.92332 0.97386 0.96257 1.22138 0.92890 0.99605 0.97502 1.24263 0.96784 0.97039 0.98844 0.87271 1.23556 0.93777 1.00871 0.94266 1.22725 1.02630 0.98326 0.88450 1.19688 0.84203 0.76303 0.84892 1.90620 1.21761 1.59762 1.74668 1.50044 1.15280 1.46858 1.24628 1.23363 0.81332 0.95141 1.00250 1.20233 0.92426 0.91385 0.94988 1.21185 1.11742 1.28409 0.95434 0.91824 1.25661 0.99071 0.95292 0.97222 1.70043 1.32253 1.33045 1.19706 0.85583 0.78869 0.77906 0.79787 1.19118 1.20386 1.20930 1.23284 0.99984 0.91985 0.86771 1.22148 1.02032 0.92664 1.01887 1.23104 0.89137 0.99141 0.94247 1.67570 1.10663 1.29868 1.13715 0.89698 0.90173 0.89204 0.84286 0.93044 0.91894 0.93633 0.88030 0.88875 0.88380 0.85540 0.87872 0.90807 0.92164 0.94033 0.92561 0.92407 0.90090 0.84262 0.80205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.17 71.24 0.72 -0.96 16 2 C 0.12 2.72 6.78 42.55 0.29 3.00 16 3 C -0.17 -4.02 8.94 22.36 0.20 -3.82 16 4 C -0.03 -0.77 5.28 -19.67 -0.10 -0.88 16 5 C 0.08 2.46 4.15 85.56 0.36 2.81 16 6 N -0.45 -12.48 5.15 -842.58 -4.34 -16.82 16 7 C 0.03 0.70 5.97 86.65 0.52 1.21 16 8 C -0.08 -1.76 6.87 31.79 0.22 -1.54 16 9 C -0.15 -3.90 7.00 -9.21 -0.06 -3.96 16 10 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 11 C -0.09 -2.20 10.09 31.33 0.32 -1.89 16 12 C -0.03 -0.88 2.57 2.94 0.01 -0.87 16 13 C 0.56 21.71 5.47 87.66 0.48 22.19 16 14 O -0.59 -26.50 17.81 -3.02 -0.05 -26.55 16 15 N -0.64 -24.89 3.31 -857.80 -2.84 -27.73 16 16 C 0.12 4.82 6.20 83.27 0.52 5.33 16 17 C 0.03 1.32 3.79 -11.12 -0.04 1.27 16 18 C -0.53 -25.97 8.83 25.60 0.23 -25.75 16 19 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 20 C 0.03 1.42 5.46 84.66 0.46 1.88 16 21 N -0.91 -47.66 13.26 21.45 0.28 -47.38 16 22 Si 0.95 39.49 29.54 68.60 2.03 41.52 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 24 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.10 4.17 8.18 83.18 0.68 4.85 16 27 C -0.17 -3.98 9.82 22.36 0.22 -3.76 16 28 C 0.10 2.20 11.18 84.67 0.95 3.15 16 29 N -0.51 -12.51 10.27 -183.88 -1.89 -14.40 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.21 8.08 -2.38 -0.02 1.19 16 33 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 34 H 0.05 1.64 5.10 -2.39 -0.01 1.63 16 35 H 0.06 2.14 7.00 -2.39 -0.02 2.12 16 36 H 0.05 1.22 6.19 -2.39 -0.01 1.21 16 37 H 0.10 2.13 8.00 -2.38 -0.02 2.11 16 38 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.07 2.90 7.12 -2.38 -0.02 2.89 16 43 H 0.06 2.39 7.37 -2.39 -0.02 2.37 16 44 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 45 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 46 H 0.06 2.34 8.14 -2.38 -0.02 2.33 16 47 H 0.08 3.18 8.10 -2.39 -0.02 3.16 16 48 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 49 H 0.18 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -61.11 397.90 0.08 -61.03 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.95 Total: 28.05 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.95 Total: 2.29 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -8.78 Total: -106.33 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.05 Total: -26.55 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -61.11 0.08 -61.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277323960.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.223 kcal (2) G-P(sol) polarization free energy of solvation -61.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds