Wall clock time and date at job start Wed Apr 1 2020 00:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.78876 * 2 1 4 4 C 1.38179 * 119.16125 * 180.27009 * 3 2 1 5 5 N 1.31885 * 120.76623 * 359.74983 * 4 3 2 6 6 C 1.31850 * 121.72710 * 359.97438 * 5 4 3 7 7 C 1.38224 * 120.76094 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.42073 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46768 * 260.00007 * 8 7 6 10 10 C 1.48103 * 110.99349 * 189.99667 * 9 8 7 11 11 C 1.53285 * 85.92325 * 222.87390 * 10 9 8 12 12 C 1.52478 * 128.80543 * 243.43949 * 11 10 9 13 13 C 1.52333 * 128.80728 * 163.14393 * 11 10 9 14 14 H 1.09002 * 117.51515 * 10.39916 * 13 11 10 15 15 C 1.50703 * 117.52091 * 225.31815 * 13 11 10 16 16 O 1.21277 * 119.99648 * 0.17104 * 15 13 11 17 17 N 1.34773 * 119.99975 * 180.16473 * 15 13 11 18 18 C 1.47580 * 134.49117 * 180.02562 * 17 15 13 19 19 C 1.53945 * 86.11705 * 155.36394 * 18 17 15 20 20 C 1.50697 * 113.74030 * 137.95460 * 19 18 17 21 21 H 1.07991 * 120.00449 * 359.71995 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48493 * 109.47326 * 90.00142 * 24 22 20 26 26 H 1.48506 * 109.46545 * 209.99892 * 24 22 20 27 27 H 1.48498 * 109.47210 * 329.99603 * 24 22 20 28 28 C 1.47576 * 134.49593 * 0.02562 * 17 15 13 29 29 C 1.48096 * 110.99760 * 90.41389 * 9 8 7 30 30 H 1.08998 * 109.47546 * 270.24260 * 1 2 3 31 31 H 1.09005 * 109.47284 * 30.25003 * 1 2 3 32 32 H 1.09004 * 109.47119 * 150.24611 * 1 2 3 33 33 H 1.08003 * 120.41981 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.61719 * 179.72465 * 4 3 2 35 35 H 1.07995 * 119.62152 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47374 * 140.00031 * 8 7 6 37 37 H 1.09003 * 109.46609 * 19.99436 * 8 7 6 38 38 H 1.09000 * 113.79685 * 108.62449 * 10 9 8 39 39 H 1.08996 * 113.80333 * 337.12775 * 10 9 8 40 40 H 1.08997 * 117.55247 * 134.71978 * 12 11 10 41 41 H 1.09004 * 117.53664 * 349.55207 * 12 11 10 42 42 H 1.08999 * 113.76879 * 41.05855 * 18 17 15 43 43 H 1.09009 * 113.76877 * 269.66448 * 18 17 15 44 44 H 1.09003 * 113.73489 * 269.15303 * 19 18 17 45 45 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77109 * 90.33293 * 28 17 15 47 47 H 1.09000 * 113.76842 * 318.93873 * 28 17 15 48 48 H 1.09000 * 113.80662 * 22.86730 * 29 9 8 49 49 H 1.09001 * 113.79630 * 251.36862 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5980 1.1520 -0.0057 5 7 4.2402 0.0000 -0.0061 6 6 3.5983 -1.1516 -0.0007 7 6 2.2166 -1.1909 0.0052 8 6 1.4908 -2.5116 0.0108 9 7 1.0385 -2.8275 -1.3508 10 6 0.1207 -3.9899 -1.3487 11 6 0.8960 -4.4654 -2.5826 12 6 0.3948 -4.6608 -4.0093 13 6 0.9322 -5.8524 -3.2113 14 1 0.2097 -6.5862 -2.8541 15 6 2.2784 -6.4037 -3.6049 16 8 3.2811 -5.7485 -3.4145 17 7 2.3681 -7.6247 -4.1683 18 6 3.4824 -8.4559 -4.6637 19 6 2.5599 -9.6611 -4.4062 20 6 2.5994 -10.6995 -5.4976 21 1 3.2331 -10.5530 -6.3596 22 6 1.8223 -11.8341 -5.3980 23 7 1.0508 -12.0127 -4.3479 24 14 1.8654 -13.1176 -6.7545 25 1 2.9231 -14.1167 -6.4572 26 1 0.5485 -13.7994 -6.8327 27 1 2.1588 -12.4572 -8.0517 28 6 1.3914 -8.6676 -4.5378 29 6 2.0633 -3.6064 -2.0831 30 1 -0.3634 0.0044 1.0276 31 1 -0.3634 0.8878 -0.5177 32 1 -0.3633 -0.8922 -0.5100 33 1 1.6966 2.1377 -0.0004 34 1 4.1582 2.0754 -0.0102 35 1 4.1585 -2.0750 -0.0008 36 1 0.6286 -2.4496 0.6748 37 1 2.1636 -3.2945 0.3609 38 1 -0.9178 -3.7306 -1.5547 39 1 0.2347 -4.6389 -0.4805 40 1 1.0149 -4.2759 -4.8188 41 1 -0.6812 -4.6110 -4.1767 42 1 4.3650 -8.4336 -4.0244 43 1 3.7144 -8.2973 -5.7169 44 1 2.6645 -10.0885 -3.4089 45 1 0.5045 -12.8111 -4.2777 46 1 1.0090 -8.5712 -5.5540 47 1 0.6045 -8.8144 -3.7980 48 1 2.7566 -4.1411 -1.4339 49 1 2.5637 -3.0434 -2.8710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277595114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:37 Heat of formation + Delta-G solvation = 98.235987 kcal Electronic energy + Delta-G solvation = -28652.500566 eV Core-core repulsion = 24775.681148 eV Total energy + Delta-G solvation = -3876.819418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91881 -40.16646 -39.03695 -37.07772 -35.28096 -34.06271 -32.69816 -32.16360 -29.32387 -28.51504 -27.53574 -26.26289 -25.59039 -25.11604 -23.71143 -23.16749 -22.68387 -21.24193 -20.13249 -18.79026 -17.96773 -17.01056 -16.85328 -16.65844 -16.47439 -16.02532 -15.84329 -15.23498 -14.84423 -14.79266 -14.42581 -14.41180 -14.10454 -13.63813 -13.49575 -13.09115 -13.06708 -12.90952 -12.79876 -12.71579 -12.38561 -12.24019 -11.90745 -11.66519 -11.58850 -11.48815 -11.28611 -10.97906 -10.85904 -10.74508 -10.45331 -10.33832 -10.20675 -9.63181 -9.62048 -9.59720 -9.32345 -9.19642 -9.00240 -8.83290 -8.61739 -7.86174 -6.21243 -4.26664 0.89638 1.06651 2.91862 3.21734 3.29258 3.31431 3.36174 3.52966 3.75506 4.05367 4.20893 4.29154 4.32281 4.45860 4.53177 4.53591 4.62085 4.76465 4.85306 5.00968 5.08997 5.12570 5.21195 5.25183 5.26763 5.30418 5.34892 5.40309 5.43811 5.56442 5.62639 5.68178 5.76863 5.84000 5.88071 5.94983 6.00370 6.08336 6.11511 6.18931 6.19714 6.26358 6.36639 6.51886 6.56506 6.63069 6.79927 6.85099 7.52201 7.76462 7.79812 8.13957 8.49727 8.76138 8.77063 9.40254 10.88383 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.001895 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.469498 B =14770.975537 C =15287.313356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.021 4.021 3 C -0.179 4.179 4 C 0.096 3.904 5 N -0.490 5.490 6 C 0.110 3.890 7 C -0.125 4.125 8 C 0.061 3.939 9 N -0.474 5.474 10 C 0.044 3.956 11 C -0.137 4.137 12 C -0.112 4.112 13 C -0.163 4.163 14 H 0.122 0.878 15 C 0.553 3.447 16 O -0.564 6.564 17 N -0.635 5.635 18 C 0.103 3.897 19 C 0.033 3.967 20 C -0.519 4.519 21 H 0.063 0.937 22 C 0.067 3.933 23 N -0.887 5.887 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 C 0.105 3.895 29 C 0.066 3.934 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.264 0.736 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 21.512 9.083 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.030 4.030 3 C -0.199 4.199 4 C -0.061 4.061 5 N -0.199 5.199 6 C -0.048 4.048 7 C -0.127 4.127 8 C -0.068 4.068 9 N -0.196 5.196 10 C -0.084 4.084 11 C -0.139 4.139 12 C -0.149 4.149 13 C -0.185 4.185 14 H 0.140 0.860 15 C 0.342 3.658 16 O -0.444 6.444 17 N -0.368 5.368 18 C -0.018 4.018 19 C 0.014 3.986 20 C -0.557 4.557 21 H 0.081 0.919 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.197 1.197 28 C -0.017 4.017 29 C -0.062 4.062 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.982 22.544 9.116 24.641 hybrid contribution -0.770 -1.520 -0.330 1.736 sum -4.753 21.024 8.786 23.276 Atomic orbital electron populations 1.20876 0.90263 1.04146 1.02358 1.20164 0.96837 0.92189 0.93804 1.22028 0.95627 0.98584 1.03664 1.22722 0.91811 0.96234 0.95322 1.67690 1.41187 0.98459 1.12518 1.22700 0.91143 0.96286 0.94646 1.20580 0.94714 0.95283 1.02140 1.21521 0.99098 0.93498 0.92636 1.68599 1.09824 1.29470 1.11752 1.23529 0.98258 0.91010 0.95586 1.22499 0.99471 0.96747 0.95141 1.22729 1.01270 0.98036 0.92907 1.22147 0.98090 0.91950 1.06314 0.85983 1.19203 0.89025 0.79597 0.77968 1.90615 1.37908 1.58393 1.57529 1.50387 1.13692 1.14739 1.57993 1.23500 0.91510 0.88831 0.98009 1.20507 0.88853 0.90230 0.99025 1.20973 1.25904 1.03630 1.05199 0.91888 1.25029 0.94978 0.97854 0.95737 1.69948 1.26384 1.27845 1.28194 0.86538 0.77458 0.81510 0.82200 1.20495 1.21154 1.19714 1.23708 0.95242 0.83905 0.98840 1.23405 0.92944 0.92191 0.97668 0.91024 0.91295 0.89603 0.85022 0.83002 0.83083 0.89754 0.92440 0.88921 0.90615 0.88108 0.87589 0.92116 0.90848 0.91748 0.92650 0.90697 0.91911 0.90187 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.36 36.01 0.34 -0.51 16 2 C -0.02 -0.20 5.92 -104.32 -0.62 -0.82 16 3 C -0.18 -1.55 9.82 -39.45 -0.39 -1.93 16 4 C 0.10 0.93 11.18 -17.55 -0.20 0.74 16 5 N -0.49 -5.96 10.36 -13.26 -0.14 -6.10 16 6 C 0.11 1.25 10.83 -17.55 -0.19 1.06 16 7 C -0.12 -1.28 5.45 -104.48 -0.57 -1.85 16 8 C 0.06 0.57 4.09 -4.97 -0.02 0.55 16 9 N -0.47 -5.08 5.56 -243.06 -1.35 -6.43 16 10 C 0.04 0.44 7.97 -3.02 -0.02 0.41 16 11 C -0.14 -1.73 3.04 -154.91 -0.47 -2.20 16 12 C -0.11 -1.39 10.24 -26.92 -0.28 -1.66 16 13 C -0.16 -2.40 5.94 -92.03 -0.55 -2.95 16 14 H 0.12 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.55 10.49 7.84 -10.99 -0.09 10.40 16 16 O -0.56 -11.98 15.86 5.56 0.09 -11.89 16 17 N -0.64 -12.70 3.61 -178.43 -0.64 -13.35 16 18 C 0.10 2.13 8.39 -2.98 -0.02 2.11 16 19 C 0.03 0.76 3.62 -90.85 -0.33 0.43 16 20 C -0.52 -13.02 8.77 -34.44 -0.30 -13.32 16 21 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 22 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -23.70 13.27 55.43 0.74 -22.97 16 24 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 C 0.11 2.16 8.17 -2.98 -0.02 2.13 16 29 C 0.07 0.86 6.38 -3.01 -0.02 0.84 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.09 0.67 6.53 -51.93 -0.34 0.33 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.15 1.59 8.04 -52.49 -0.42 1.16 16 36 H 0.08 0.66 7.34 -51.93 -0.38 0.28 16 37 H 0.06 0.54 7.26 -51.93 -0.38 0.16 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.47 8.09 -51.92 -0.42 1.05 16 44 H 0.06 1.62 8.12 -51.93 -0.42 1.20 16 45 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 46 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.13 7.35 -51.93 -0.38 0.74 16 49 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 406.21 15.07 6.12 6.12 Total: -1.00 -29.61 406.21 -11.82 -41.43 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -7.77 Total: 3.30 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.84 Total: -4.93 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -1.40 Total: -48.84 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.61 -11.82 -41.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.665 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds