Wall clock time and date at job start Wed Apr 1 2020 00:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38665 * 120.78876 * 2 1 4 4 C 1.38179 * 119.16125 * 180.27009 * 3 2 1 5 5 N 1.31885 * 120.76623 * 359.74983 * 4 3 2 6 6 C 1.31850 * 121.72710 * 359.97438 * 5 4 3 7 7 C 1.38224 * 120.76094 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.42073 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.46768 * 260.00007 * 8 7 6 10 10 C 1.48103 * 110.99349 * 189.99667 * 9 8 7 11 11 C 1.53285 * 85.92325 * 222.87390 * 10 9 8 12 12 C 1.52478 * 128.80543 * 243.43949 * 11 10 9 13 13 C 1.52333 * 128.80728 * 163.14393 * 11 10 9 14 14 H 1.09002 * 117.51515 * 10.39916 * 13 11 10 15 15 C 1.50703 * 117.52091 * 225.31815 * 13 11 10 16 16 O 1.21277 * 119.99648 * 0.17104 * 15 13 11 17 17 N 1.34773 * 119.99975 * 180.16473 * 15 13 11 18 18 C 1.47580 * 134.49117 * 180.02562 * 17 15 13 19 19 C 1.53945 * 86.11705 * 155.36394 * 18 17 15 20 20 C 1.50697 * 113.74030 * 137.95460 * 19 18 17 21 21 H 1.07991 * 120.00449 * 359.71995 * 20 19 18 22 22 C 1.37885 * 119.99686 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99913 * 359.72095 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 179.72528 * 22 20 19 25 25 H 1.48493 * 109.47326 * 90.00142 * 24 22 20 26 26 H 1.48506 * 109.46545 * 209.99892 * 24 22 20 27 27 H 1.48498 * 109.47210 * 329.99603 * 24 22 20 28 28 C 1.47576 * 134.49593 * 0.02562 * 17 15 13 29 29 C 1.48096 * 110.99760 * 90.41389 * 9 8 7 30 30 H 1.08998 * 109.47546 * 270.24260 * 1 2 3 31 31 H 1.09005 * 109.47284 * 30.25003 * 1 2 3 32 32 H 1.09004 * 109.47119 * 150.24611 * 1 2 3 33 33 H 1.08003 * 120.41981 * 359.97438 * 3 2 1 34 34 H 1.08004 * 119.61719 * 179.72465 * 4 3 2 35 35 H 1.07995 * 119.62152 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.47374 * 140.00031 * 8 7 6 37 37 H 1.09003 * 109.46609 * 19.99436 * 8 7 6 38 38 H 1.09000 * 113.79685 * 108.62449 * 10 9 8 39 39 H 1.08996 * 113.80333 * 337.12775 * 10 9 8 40 40 H 1.08997 * 117.55247 * 134.71978 * 12 11 10 41 41 H 1.09004 * 117.53664 * 349.55207 * 12 11 10 42 42 H 1.08999 * 113.76879 * 41.05855 * 18 17 15 43 43 H 1.09009 * 113.76877 * 269.66448 * 18 17 15 44 44 H 1.09003 * 113.73489 * 269.15303 * 19 18 17 45 45 H 0.97000 * 119.99651 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.77109 * 90.33293 * 28 17 15 47 47 H 1.09000 * 113.76842 * 318.93873 * 28 17 15 48 48 H 1.09000 * 113.80662 * 22.86730 * 29 9 8 49 49 H 1.09001 * 113.79630 * 251.36862 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1912 0.0000 4 6 3.5980 1.1520 -0.0057 5 7 4.2402 0.0000 -0.0061 6 6 3.5983 -1.1516 -0.0007 7 6 2.2166 -1.1909 0.0052 8 6 1.4908 -2.5116 0.0108 9 7 1.0385 -2.8275 -1.3508 10 6 0.1207 -3.9899 -1.3487 11 6 0.8960 -4.4654 -2.5826 12 6 0.3948 -4.6608 -4.0093 13 6 0.9322 -5.8524 -3.2113 14 1 0.2097 -6.5862 -2.8541 15 6 2.2784 -6.4037 -3.6049 16 8 3.2811 -5.7485 -3.4145 17 7 2.3681 -7.6247 -4.1683 18 6 3.4824 -8.4559 -4.6637 19 6 2.5599 -9.6611 -4.4062 20 6 2.5994 -10.6995 -5.4976 21 1 3.2331 -10.5530 -6.3596 22 6 1.8223 -11.8341 -5.3980 23 7 1.0508 -12.0127 -4.3479 24 14 1.8654 -13.1176 -6.7545 25 1 2.9231 -14.1167 -6.4572 26 1 0.5485 -13.7994 -6.8327 27 1 2.1588 -12.4572 -8.0517 28 6 1.3914 -8.6676 -4.5378 29 6 2.0633 -3.6064 -2.0831 30 1 -0.3634 0.0044 1.0276 31 1 -0.3634 0.8878 -0.5177 32 1 -0.3633 -0.8922 -0.5100 33 1 1.6966 2.1377 -0.0004 34 1 4.1582 2.0754 -0.0102 35 1 4.1585 -2.0750 -0.0008 36 1 0.6286 -2.4496 0.6748 37 1 2.1636 -3.2945 0.3609 38 1 -0.9178 -3.7306 -1.5547 39 1 0.2347 -4.6389 -0.4805 40 1 1.0149 -4.2759 -4.8188 41 1 -0.6812 -4.6110 -4.1767 42 1 4.3650 -8.4336 -4.0244 43 1 3.7144 -8.2973 -5.7169 44 1 2.6645 -10.0885 -3.4089 45 1 0.5045 -12.8111 -4.2777 46 1 1.0090 -8.5712 -5.5540 47 1 0.6045 -8.8144 -3.7980 48 1 2.7566 -4.1411 -1.4339 49 1 2.5637 -3.0434 -2.8710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277595114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:36 Heat of formation + Delta-G solvation = 81.127612 kcal Electronic energy + Delta-G solvation = -28653.242441 eV Core-core repulsion = 24775.681148 eV Total energy + Delta-G solvation = -3877.561293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.85483 -41.16206 -40.41145 -38.60878 -36.32150 -34.85726 -34.61840 -32.93866 -30.98376 -29.25254 -28.32792 -27.34417 -27.11769 -26.85031 -24.58045 -24.47105 -23.42266 -22.11029 -21.66446 -20.02559 -19.27189 -18.72214 -18.09831 -17.65619 -17.36590 -17.10173 -16.64795 -16.61020 -16.37149 -16.10241 -15.79228 -15.28611 -15.03828 -14.89278 -14.41405 -14.31103 -14.08706 -13.79577 -13.73909 -13.67952 -13.51520 -13.33061 -13.26600 -13.09504 -12.99394 -12.75183 -12.60551 -12.49867 -12.21478 -12.18523 -11.70752 -11.46217 -11.30554 -11.23187 -11.11680 -10.66626 -10.49685 -10.38733 -10.30753 -9.98493 -9.77036 -9.50962 -8.16439 -6.27239 0.15343 0.33958 1.46859 1.49142 1.52358 1.58482 1.94122 2.45557 2.57723 2.83322 3.11126 3.14661 3.18590 3.51239 3.52302 3.70730 3.77217 3.85112 3.90907 3.94980 4.06600 4.24793 4.29065 4.31851 4.43665 4.45392 4.52213 4.55577 4.56694 4.64691 4.65561 4.67244 4.71185 4.76396 4.83694 4.84441 4.89154 4.89927 4.95881 4.99193 5.01167 5.05655 5.15414 5.25440 5.31788 5.49517 5.59773 5.81640 5.82148 5.98683 6.22884 6.80409 6.91592 7.03780 7.20526 7.42598 8.93216 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028320 B = 0.001895 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.469498 B =14770.975537 C =15287.313356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.029 4.029 3 C -0.176 4.176 4 C 0.083 3.917 5 N -0.523 5.523 6 C 0.087 3.913 7 C -0.133 4.133 8 C 0.064 3.936 9 N -0.469 5.469 10 C 0.056 3.944 11 C -0.136 4.136 12 C -0.096 4.096 13 C -0.180 4.180 14 H 0.135 0.865 15 C 0.547 3.453 16 O -0.592 6.592 17 N -0.639 5.639 18 C 0.107 3.893 19 C 0.022 3.978 20 C -0.530 4.530 21 H 0.064 0.936 22 C 0.022 3.978 23 N -0.917 5.917 24 Si 0.957 3.043 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.266 1.266 28 C 0.123 3.877 29 C 0.062 3.938 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.265 0.735 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.528 23.020 8.990 25.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.037 4.037 3 C -0.195 4.195 4 C -0.073 4.073 5 N -0.233 5.233 6 C -0.070 4.070 7 C -0.136 4.136 8 C -0.064 4.064 9 N -0.192 5.192 10 C -0.071 4.071 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.201 4.201 14 H 0.152 0.848 15 C 0.338 3.662 16 O -0.475 6.475 17 N -0.372 5.372 18 C -0.015 4.015 19 C 0.003 3.997 20 C -0.569 4.569 21 H 0.082 0.918 22 C -0.179 4.179 23 N -0.555 5.555 24 Si 0.783 3.217 25 H -0.205 1.205 26 H -0.209 1.209 27 H -0.190 1.190 28 C 0.001 3.999 29 C -0.066 4.066 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.158 0.842 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.461 24.061 9.023 26.497 hybrid contribution 0.089 -1.900 -0.262 1.920 sum -6.372 22.161 8.761 24.667 Atomic orbital electron populations 1.20903 0.88323 1.04499 1.03475 1.20547 0.98270 0.91921 0.92966 1.22370 0.95234 0.99732 1.02175 1.23200 0.92909 0.96270 0.94932 1.67647 1.42411 0.99368 1.13836 1.22742 0.92055 0.96180 0.96012 1.20677 0.94259 0.96263 1.02371 1.21540 0.99761 0.92973 0.92143 1.68574 1.08822 1.29328 1.12428 1.23624 0.98991 0.90259 0.94256 1.22720 0.99873 0.94589 0.96588 1.22859 1.02860 0.95303 0.92308 1.22088 0.95902 0.93188 1.08918 0.84758 1.19978 0.90556 0.78796 0.76833 1.90602 1.39507 1.58928 1.58438 1.50383 1.12990 1.15337 1.58464 1.23372 0.91489 0.88208 0.98475 1.20415 0.91315 0.90918 0.97059 1.21258 1.25677 1.04358 1.05557 0.91826 1.25735 0.94753 0.99687 0.97700 1.70046 1.27211 1.28471 1.29760 0.85570 0.77288 0.79051 0.79828 1.20492 1.20931 1.19016 1.23424 0.94400 0.82933 0.99178 1.23243 0.93380 0.92545 0.97416 0.89411 0.90011 0.90135 0.82009 0.80763 0.83809 0.87520 0.92957 0.86252 0.89652 0.89301 0.84249 0.92299 0.90103 0.94643 0.92630 0.90252 0.91494 0.91911 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.36 71.24 0.67 -0.60 16 2 C -0.03 -0.48 5.92 -19.67 -0.12 -0.59 16 3 C -0.18 -2.67 9.82 22.36 0.22 -2.45 16 4 C 0.08 1.55 11.18 84.67 0.95 2.50 16 5 N -0.52 -13.06 10.36 -195.85 -2.03 -15.09 16 6 C 0.09 2.08 10.83 84.69 0.92 2.99 16 7 C -0.13 -2.67 5.45 -19.77 -0.11 -2.78 16 8 C 0.06 1.13 4.09 85.56 0.35 1.48 16 9 N -0.47 -9.34 5.56 -922.91 -5.13 -14.47 16 10 C 0.06 0.95 7.97 86.17 0.69 1.64 16 11 C -0.14 -3.23 3.04 -52.35 -0.16 -3.39 16 12 C -0.10 -2.18 10.24 30.47 0.31 -1.87 16 13 C -0.18 -5.07 5.94 -11.71 -0.07 -5.14 16 14 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 15 C 0.55 20.88 7.84 87.66 0.69 21.56 16 16 O -0.59 -25.85 15.86 -3.02 -0.05 -25.89 16 17 N -0.64 -25.72 3.61 -836.83 -3.02 -28.73 16 18 C 0.11 4.49 8.39 86.48 0.73 5.21 16 19 C 0.02 1.04 3.62 -10.88 -0.04 1.00 16 20 C -0.53 -26.75 8.77 25.60 0.22 -26.53 16 21 H 0.06 3.13 7.81 -2.92 -0.02 3.11 16 22 C 0.02 1.10 5.46 84.66 0.46 1.57 16 23 N -0.92 -49.32 13.27 21.45 0.28 -49.04 16 24 Si 0.96 40.48 29.54 68.60 2.03 42.50 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 28 C 0.12 5.03 8.17 86.48 0.71 5.74 16 29 C 0.06 1.66 6.38 86.17 0.55 2.21 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.08 0.70 8.10 -2.38 -0.02 0.68 16 32 H 0.08 0.99 6.53 -2.39 -0.02 0.98 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 34 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.14 3.38 8.04 -2.91 -0.02 3.35 16 36 H 0.11 1.40 7.34 -2.39 -0.02 1.38 16 37 H 0.05 0.98 7.26 -2.39 -0.02 0.96 16 38 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.32 7.92 -2.39 -0.02 1.30 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.14 2.24 8.14 -2.38 -0.02 2.23 16 42 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.08 3.26 8.09 -2.38 -0.02 3.24 16 44 H 0.04 1.85 8.12 -2.39 -0.02 1.83 16 45 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 46 H 0.08 3.18 8.09 -2.38 -0.02 3.16 16 47 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.06 1.87 7.35 -2.39 -0.02 1.85 16 49 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -65.14 406.21 -0.01 -65.15 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.94 Total: 23.00 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.96 Total: 2.56 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -9.89 Total: -107.32 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.89 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -65.14 -0.01 -65.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.281 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds