Wall clock time and date at job start Wed Apr 1 2020 00:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78842 * 2 1 4 4 C 1.38177 * 119.16074 * 180.02562 * 3 2 1 5 5 N 1.31885 * 120.76951 * 0.02562 * 4 3 2 6 6 C 1.31858 * 121.72179 * 359.68480 * 5 4 3 7 7 C 1.38218 * 120.76470 * 0.58351 * 6 5 4 8 8 C 1.50702 * 120.42263 * 179.72593 * 7 6 5 9 9 N 1.46899 * 109.47295 * 259.72232 * 8 7 6 10 10 C 1.48097 * 111.00016 * 189.99501 * 9 8 7 11 11 C 1.53287 * 85.92720 * 222.87774 * 10 9 8 12 12 C 1.52479 * 128.83327 * 243.45911 * 11 10 9 13 13 C 1.52327 * 128.80476 * 163.14581 * 11 10 9 14 14 H 1.09002 * 117.51888 * 225.35887 * 13 11 10 15 15 C 1.50699 * 117.51874 * 10.43913 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.82725 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.83104 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.48107 * 111.00010 * 90.41084 * 9 8 7 30 30 H 1.08999 * 109.47171 * 269.98228 * 1 2 3 31 31 H 1.08994 * 109.47008 * 29.98468 * 1 2 3 32 32 H 1.09000 * 109.46542 * 149.98418 * 1 2 3 33 33 H 1.07997 * 120.41991 * 0.03489 * 3 2 1 34 34 H 1.08000 * 119.61632 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.61576 * 180.28663 * 6 5 4 36 36 H 1.08999 * 109.47263 * 139.71731 * 8 7 6 37 37 H 1.09004 * 109.46827 * 19.72660 * 8 7 6 38 38 H 1.09000 * 113.80003 * 108.61945 * 10 9 8 39 39 H 1.09007 * 113.80297 * 337.13042 * 10 9 8 40 40 H 1.09000 * 117.50569 * 134.71223 * 12 11 10 41 41 H 1.08994 * 117.54544 * 349.56490 * 12 11 10 42 42 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 43 43 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 44 44 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 45 45 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 46 46 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 47 47 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 48 48 H 1.09003 * 113.79872 * 22.87521 * 29 9 8 49 49 H 1.08993 * 113.80048 * 251.37769 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0041 7 6 2.2167 -1.1909 -0.0008 8 6 1.4909 -2.5116 -0.0005 9 7 1.0434 -2.8247 -1.3642 10 6 0.1257 -3.9871 -1.3678 11 6 0.9054 -4.4601 -2.5999 12 6 0.4100 -4.6525 -4.0291 13 6 0.9438 -5.8458 -3.2313 14 1 1.9186 -6.2442 -3.5127 15 6 -0.0575 -6.8611 -2.7437 16 8 -0.8517 -6.5619 -1.8774 17 7 -0.0703 -8.1017 -3.2703 18 6 -0.8818 -9.3133 -3.0432 19 6 -0.5040 -9.7090 -4.4823 20 6 -0.1553 -11.1666 -4.6390 21 1 -0.1863 -11.8244 -3.7830 22 6 0.2033 -11.6606 -5.8753 23 7 0.2416 -10.8596 -6.9176 24 14 0.6348 -13.4676 -6.0698 25 1 -0.5300 -14.3000 -5.6750 26 1 1.7945 -13.7958 -5.2022 27 1 0.9823 -13.7439 -7.4869 28 6 0.7220 -8.7943 -4.3049 29 6 2.0708 -3.6021 -2.0946 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3632 -0.8899 -0.5141 33 1 1.6967 2.1378 0.0006 34 1 4.1583 2.0754 -0.0001 35 1 4.1586 -2.0749 0.0077 36 1 0.6265 -2.4510 0.6607 37 1 2.1625 -3.2951 0.3505 38 1 -0.9121 -3.7275 -1.5769 39 1 0.2366 -4.6379 -0.5005 40 1 1.0342 -4.2655 -4.8346 41 1 -0.6651 -4.6019 -4.2010 42 1 -1.9443 -9.1114 -2.9077 43 1 -0.4753 -9.9804 -2.2832 44 1 -1.2110 -9.3579 -5.2339 45 1 0.0171 -9.9212 -6.8167 46 1 1.6006 -9.3081 -3.9148 47 1 0.9404 -8.1780 -5.1770 48 1 2.7618 -4.1381 -1.4440 49 1 2.5741 -3.0375 -2.8795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277595116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:42 Heat of formation + Delta-G solvation = 94.755208 kcal Electronic energy + Delta-G solvation = -28595.575488 eV Core-core repulsion = 24718.605133 eV Total energy + Delta-G solvation = -3876.970356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.98882 -40.25087 -39.17717 -37.23595 -35.35736 -34.12261 -32.90559 -32.23719 -29.25257 -28.54075 -27.60429 -26.29493 -25.48758 -25.02295 -23.76917 -23.16895 -22.74245 -21.34157 -20.49760 -18.89001 -18.05331 -17.30805 -17.00235 -16.71011 -16.50854 -16.08847 -15.87158 -15.40163 -15.07278 -14.82152 -14.41357 -14.23569 -13.86281 -13.84323 -13.60166 -13.39758 -13.13259 -12.92986 -12.85635 -12.77100 -12.43443 -12.29608 -11.92293 -11.77416 -11.67226 -11.53751 -11.51199 -11.02182 -10.81372 -10.71789 -10.44701 -10.27128 -10.20276 -9.70763 -9.70158 -9.66867 -9.46056 -9.26024 -8.94758 -8.65053 -8.56751 -8.00556 -6.54657 -4.28237 0.81978 0.99546 2.79640 3.28873 3.36154 3.37504 3.42774 3.55912 3.67184 3.98062 4.14996 4.19970 4.40472 4.41515 4.44744 4.47611 4.55365 4.70508 4.78546 4.97685 5.06352 5.09339 5.14664 5.15627 5.22138 5.27046 5.31339 5.34891 5.42687 5.50462 5.55462 5.64729 5.70959 5.81274 5.82541 5.83904 5.88221 5.94421 6.00165 6.04077 6.13082 6.15818 6.21051 6.37745 6.41905 6.43984 6.59415 6.79213 7.24565 7.70771 7.94796 8.23742 8.34650 8.60717 8.68987 9.44675 10.84683 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028664 B = 0.001828 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.610478 B =15316.357183 C =15691.803216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.020 4.020 3 C -0.177 4.177 4 C 0.096 3.904 5 N -0.491 5.491 6 C 0.106 3.894 7 C -0.124 4.124 8 C 0.061 3.939 9 N -0.473 5.473 10 C 0.064 3.936 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.166 4.166 14 H 0.121 0.879 15 C 0.554 3.446 16 O -0.562 6.562 17 N -0.635 5.635 18 C 0.112 3.888 19 C 0.014 3.986 20 C -0.597 4.597 21 H 0.056 0.944 22 C 0.025 3.975 23 N -0.902 5.902 24 Si 1.069 2.931 25 H -0.286 1.286 26 H -0.287 1.287 27 H -0.282 1.282 28 C 0.096 3.904 29 C 0.046 3.954 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.086 0.914 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.054 0.946 45 H 0.270 0.730 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 20.978 11.680 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.061 4.061 5 N -0.199 5.199 6 C -0.051 4.051 7 C -0.127 4.127 8 C -0.068 4.068 9 N -0.195 5.195 10 C -0.064 4.064 11 C -0.137 4.137 12 C -0.148 4.148 13 C -0.187 4.187 14 H 0.139 0.861 15 C 0.344 3.656 16 O -0.442 6.442 17 N -0.368 5.368 18 C -0.009 4.009 19 C -0.006 4.006 20 C -0.635 4.635 21 H 0.074 0.926 22 C -0.181 4.181 23 N -0.537 5.537 24 Si 0.897 3.103 25 H -0.213 1.213 26 H -0.213 1.213 27 H -0.207 1.207 28 C -0.026 4.026 29 C -0.083 4.083 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.104 0.896 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.698 20.821 10.865 23.950 hybrid contribution -0.834 0.437 1.523 1.791 sum 3.863 21.257 12.388 24.905 Atomic orbital electron populations 1.20896 0.90172 1.04253 1.02506 1.20195 0.96916 0.92181 0.93565 1.22048 0.95617 0.98642 1.03417 1.22713 0.91814 0.96206 0.95377 1.67680 1.41175 0.98465 1.12614 1.22643 0.91061 0.96223 0.95172 1.20600 0.94691 0.95354 1.02027 1.21521 0.99259 0.93295 0.92693 1.68587 1.09020 1.30159 1.11757 1.23345 0.98033 0.89348 0.95666 1.22506 0.99273 0.96026 0.95900 1.22742 1.02009 0.97584 0.92499 1.22147 1.00844 0.89238 1.06486 0.86115 1.19225 0.83781 0.81710 0.80906 1.90612 1.41829 1.79388 1.32412 1.50346 1.37227 1.09406 1.39859 1.23345 0.94894 0.82311 1.00396 1.20645 0.92462 0.95962 0.91496 1.21809 1.51392 0.92798 0.97478 0.92558 1.25889 0.93779 1.06379 0.92057 1.70821 1.44048 1.06976 1.31822 0.83531 0.76591 0.73980 0.76242 1.21277 1.21300 1.20708 1.23867 0.98420 0.92332 0.88023 1.23609 0.93516 0.93081 0.98069 0.90915 0.91222 0.89528 0.84957 0.82968 0.83242 0.89578 0.92528 0.88910 0.90271 0.87531 0.87925 0.92027 0.90647 0.92758 0.91933 0.90356 0.92085 0.90648 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.36 36.01 0.34 -0.56 16 2 C -0.02 -0.18 5.92 -104.31 -0.62 -0.80 16 3 C -0.18 -1.43 9.82 -39.44 -0.39 -1.82 16 4 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 5 N -0.49 -5.35 10.36 -13.26 -0.14 -5.49 16 6 C 0.11 1.06 10.83 -17.55 -0.19 0.87 16 7 C -0.12 -1.18 5.45 -104.48 -0.57 -1.75 16 8 C 0.06 0.55 4.09 -4.98 -0.02 0.53 16 9 N -0.47 -4.97 5.58 -243.05 -1.36 -6.33 16 10 C 0.06 0.78 6.38 -3.02 -0.02 0.76 16 11 C -0.14 -1.69 3.04 -154.91 -0.47 -2.16 16 12 C -0.11 -1.39 10.24 -26.92 -0.28 -1.67 16 13 C -0.17 -2.40 5.94 -92.04 -0.55 -2.95 16 14 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 15 C 0.55 10.31 7.84 -10.98 -0.09 10.22 16 16 O -0.56 -11.61 15.86 5.56 0.09 -11.52 16 17 N -0.64 -12.54 3.61 -178.40 -0.64 -13.18 16 18 C 0.11 2.31 8.39 -2.97 -0.02 2.29 16 19 C 0.01 0.31 3.10 -90.83 -0.28 0.03 16 20 C -0.60 -15.17 8.77 -34.44 -0.30 -15.47 16 21 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 22 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 23 N -0.90 -25.01 13.65 55.43 0.76 -24.25 16 24 Si 1.07 23.24 29.90 -169.99 -5.08 18.15 16 25 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.10 1.95 8.12 -2.96 -0.02 1.92 16 29 C 0.05 0.47 7.97 -3.01 -0.02 0.45 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.09 0.73 6.54 -51.93 -0.34 0.39 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 35 H 0.15 1.25 8.04 -52.49 -0.42 0.82 16 36 H 0.09 0.74 7.32 -51.93 -0.38 0.36 16 37 H 0.06 0.48 7.26 -51.93 -0.38 0.11 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 40 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 44 H 0.05 1.33 7.61 -51.93 -0.40 0.93 16 45 H 0.27 7.38 7.04 -40.82 -0.29 7.09 16 46 H 0.08 1.59 8.09 -51.93 -0.42 1.17 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 48 H 0.08 0.71 7.48 -51.93 -0.39 0.33 16 49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 404.62 15.07 6.10 6.10 Total: -1.00 -30.10 404.62 -11.76 -41.86 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.69 Total: 3.55 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.80 Total: -8.89 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -1.38 Total: -49.24 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.15 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.10 -11.76 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.615 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds