Wall clock time and date at job start Wed Apr 1 2020 00:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38677 * 120.78842 * 2 1 4 4 C 1.38177 * 119.16074 * 180.02562 * 3 2 1 5 5 N 1.31885 * 120.76951 * 0.02562 * 4 3 2 6 6 C 1.31858 * 121.72179 * 359.68480 * 5 4 3 7 7 C 1.38218 * 120.76470 * 0.58351 * 6 5 4 8 8 C 1.50702 * 120.42263 * 179.72593 * 7 6 5 9 9 N 1.46899 * 109.47295 * 259.72232 * 8 7 6 10 10 C 1.48097 * 111.00016 * 189.99501 * 9 8 7 11 11 C 1.53287 * 85.92720 * 222.87774 * 10 9 8 12 12 C 1.52479 * 128.83327 * 243.45911 * 11 10 9 13 13 C 1.52327 * 128.80476 * 163.14581 * 11 10 9 14 14 H 1.09002 * 117.51888 * 225.35887 * 13 11 10 15 15 C 1.50699 * 117.51874 * 10.43913 * 13 11 10 16 16 O 1.21280 * 120.00081 * 359.82725 * 15 13 11 17 17 N 1.34781 * 120.00312 * 179.83104 * 15 13 11 18 18 C 1.47580 * 134.49134 * 179.97438 * 17 15 13 19 19 C 1.53952 * 86.11500 * 155.36347 * 18 17 15 20 20 C 1.50695 * 113.74060 * 137.95290 * 19 18 17 21 21 H 1.07995 * 120.00496 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99572 * 180.02562 * 20 19 18 23 23 N 1.31511 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99951 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 59.99744 * 24 22 20 26 26 H 1.48503 * 109.47261 * 299.99924 * 24 22 20 27 27 H 1.48500 * 109.47454 * 179.97438 * 24 22 20 28 28 C 1.47578 * 134.49101 * 0.02562 * 17 15 13 29 29 C 1.48107 * 111.00010 * 90.41084 * 9 8 7 30 30 H 1.08999 * 109.47171 * 269.98228 * 1 2 3 31 31 H 1.08994 * 109.47008 * 29.98468 * 1 2 3 32 32 H 1.09000 * 109.46542 * 149.98418 * 1 2 3 33 33 H 1.07997 * 120.41991 * 0.03489 * 3 2 1 34 34 H 1.08000 * 119.61632 * 180.02562 * 4 3 2 35 35 H 1.08002 * 119.61576 * 180.28663 * 6 5 4 36 36 H 1.08999 * 109.47263 * 139.71731 * 8 7 6 37 37 H 1.09004 * 109.46827 * 19.72660 * 8 7 6 38 38 H 1.09000 * 113.80003 * 108.61945 * 10 9 8 39 39 H 1.09007 * 113.80297 * 337.13042 * 10 9 8 40 40 H 1.09000 * 117.50569 * 134.71223 * 12 11 10 41 41 H 1.08994 * 117.54544 * 349.56490 * 12 11 10 42 42 H 1.08998 * 113.77108 * 41.06531 * 18 17 15 43 43 H 1.08991 * 113.87349 * 269.67144 * 18 17 15 44 44 H 1.08997 * 113.74240 * 269.15892 * 19 18 17 45 45 H 0.97006 * 119.99995 * 359.97438 * 23 22 20 46 46 H 1.08997 * 113.77175 * 90.33932 * 28 17 15 47 47 H 1.09004 * 113.76848 * 318.93948 * 28 17 15 48 48 H 1.09003 * 113.79872 * 22.87521 * 29 9 8 49 49 H 1.08993 * 113.80048 * 251.37769 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5981 1.1521 -0.0005 5 7 4.2403 0.0002 -0.0016 6 6 3.5984 -1.1516 0.0041 7 6 2.2167 -1.1909 -0.0008 8 6 1.4909 -2.5116 -0.0005 9 7 1.0434 -2.8247 -1.3642 10 6 0.1257 -3.9871 -1.3678 11 6 0.9054 -4.4601 -2.5999 12 6 0.4100 -4.6525 -4.0291 13 6 0.9438 -5.8458 -3.2313 14 1 1.9186 -6.2442 -3.5127 15 6 -0.0575 -6.8611 -2.7437 16 8 -0.8517 -6.5619 -1.8774 17 7 -0.0703 -8.1017 -3.2703 18 6 -0.8818 -9.3133 -3.0432 19 6 -0.5040 -9.7090 -4.4823 20 6 -0.1553 -11.1666 -4.6390 21 1 -0.1863 -11.8244 -3.7830 22 6 0.2033 -11.6606 -5.8753 23 7 0.2416 -10.8596 -6.9176 24 14 0.6348 -13.4676 -6.0698 25 1 -0.5300 -14.3000 -5.6750 26 1 1.7945 -13.7958 -5.2022 27 1 0.9823 -13.7439 -7.4869 28 6 0.7220 -8.7943 -4.3049 29 6 2.0708 -3.6021 -2.0946 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3632 -0.8899 -0.5141 33 1 1.6967 2.1378 0.0006 34 1 4.1583 2.0754 -0.0001 35 1 4.1586 -2.0749 0.0077 36 1 0.6265 -2.4510 0.6607 37 1 2.1625 -3.2951 0.3505 38 1 -0.9121 -3.7275 -1.5769 39 1 0.2366 -4.6379 -0.5005 40 1 1.0342 -4.2655 -4.8346 41 1 -0.6651 -4.6019 -4.2010 42 1 -1.9443 -9.1114 -2.9077 43 1 -0.4753 -9.9804 -2.2832 44 1 -1.2110 -9.3579 -5.2339 45 1 0.0171 -9.9212 -6.8167 46 1 1.6006 -9.3081 -3.9148 47 1 0.9404 -8.1780 -5.1770 48 1 2.7618 -4.1381 -1.4440 49 1 2.5741 -3.0375 -2.8795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277595116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:41 Heat of formation + Delta-G solvation = 77.556439 kcal Electronic energy + Delta-G solvation = -28596.321283 eV Core-core repulsion = 24718.605133 eV Total energy + Delta-G solvation = -3877.716150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.90867 -41.21015 -40.50794 -38.74081 -36.36833 -34.89246 -34.82537 -32.95512 -30.86755 -29.26858 -28.34864 -27.20041 -27.11068 -26.83753 -24.60272 -24.51075 -23.43166 -22.34028 -21.87119 -20.09857 -19.34488 -19.07512 -18.07244 -17.66849 -17.38450 -17.10425 -16.86901 -16.61158 -16.35660 -15.88577 -15.61027 -15.41513 -15.23432 -14.98768 -14.65542 -14.34602 -14.00698 -13.81998 -13.73077 -13.66786 -13.53718 -13.50371 -13.31054 -13.22544 -13.14618 -12.79951 -12.52214 -12.43975 -12.20969 -11.90803 -11.76855 -11.51632 -11.42758 -11.26443 -11.02491 -10.55901 -10.45534 -10.38728 -10.31955 -9.98167 -9.77436 -9.64470 -8.60851 -6.34432 0.16042 0.33283 1.41594 1.61367 1.66719 1.84667 1.86274 2.51269 2.61306 2.81775 3.05119 3.13024 3.17781 3.44992 3.53266 3.65625 3.72620 3.82422 3.86074 3.90715 4.04916 4.09573 4.21380 4.25964 4.27369 4.39010 4.42993 4.48071 4.50366 4.51627 4.62146 4.65652 4.66340 4.68165 4.72659 4.74943 4.77666 4.81083 4.88809 4.90705 4.95658 5.02795 5.05005 5.21769 5.28492 5.38917 5.48283 5.81109 5.95721 6.00751 6.19438 6.58718 6.80596 7.04120 7.11022 7.45122 8.79576 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.028664 B = 0.001828 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.610478 B =15316.357183 C =15691.803216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.031 4.031 3 C -0.176 4.176 4 C 0.086 3.914 5 N -0.518 5.518 6 C 0.094 3.906 7 C -0.132 4.132 8 C 0.064 3.936 9 N -0.471 5.471 10 C 0.064 3.936 11 C -0.131 4.131 12 C -0.102 4.102 13 C -0.179 4.179 14 H 0.134 0.866 15 C 0.550 3.450 16 O -0.585 6.585 17 N -0.639 5.639 18 C 0.116 3.884 19 C 0.000 4.000 20 C -0.604 4.604 21 H 0.055 0.945 22 C -0.021 4.021 23 N -0.929 5.929 24 Si 1.113 2.887 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.288 1.288 28 C 0.114 3.886 29 C 0.054 3.946 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.158 0.842 34 H 0.176 0.824 35 H 0.159 0.841 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.032 0.968 45 H 0.261 0.739 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 22.192 12.253 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.040 4.040 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.228 5.228 6 C -0.063 4.063 7 C -0.135 4.135 8 C -0.064 4.064 9 N -0.193 5.193 10 C -0.064 4.064 11 C -0.133 4.133 12 C -0.140 4.140 13 C -0.201 4.201 14 H 0.152 0.848 15 C 0.342 3.658 16 O -0.467 6.467 17 N -0.372 5.372 18 C -0.006 4.006 19 C -0.019 4.019 20 C -0.642 4.642 21 H 0.073 0.927 22 C -0.221 4.221 23 N -0.565 5.565 24 Si 0.935 3.065 25 H -0.200 1.200 26 H -0.195 1.195 27 H -0.213 1.213 28 C -0.008 4.008 29 C -0.074 4.074 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.176 0.824 34 H 0.193 0.807 35 H 0.176 0.824 36 H 0.108 0.892 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.150 0.850 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.105 0.895 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.661 22.057 11.461 25.493 hybrid contribution -1.209 0.151 1.416 1.868 sum 4.452 22.208 12.877 26.055 Atomic orbital electron populations 1.20885 0.89215 1.04161 1.03173 1.20492 0.97761 0.92404 0.93300 1.22333 0.95455 0.99457 1.02343 1.23170 0.92567 0.96505 0.94757 1.67689 1.42100 0.99274 1.13716 1.22833 0.91443 0.96529 0.95451 1.20625 0.94618 0.95611 1.02627 1.21505 0.99508 0.93510 0.91876 1.68572 1.08819 1.29139 1.12764 1.23237 0.97884 0.89979 0.95330 1.22692 1.00453 0.94255 0.95865 1.22849 1.01898 0.95796 0.93426 1.22097 1.00247 0.89046 1.08676 0.84843 1.19921 0.84011 0.81589 0.80281 1.90597 1.43065 1.79621 1.33454 1.50325 1.37016 1.09762 1.40064 1.23212 0.95251 0.83128 0.99040 1.20598 0.93570 0.95441 0.92280 1.22104 1.50610 0.94086 0.97406 0.92671 1.27137 0.93456 1.09511 0.91990 1.70925 1.46153 1.06813 1.32611 0.82961 0.77361 0.70091 0.76093 1.19986 1.19465 1.21340 1.23549 0.97172 0.91708 0.88409 1.23661 0.92977 0.92531 0.98273 0.89840 0.90059 0.90823 0.82443 0.80741 0.82402 0.89245 0.91916 0.89986 0.91305 0.85006 0.88950 0.91999 0.90101 0.95034 0.92926 0.90178 0.91342 0.89523 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.36 71.24 0.67 -0.86 16 2 C -0.03 -0.50 5.92 -19.66 -0.12 -0.62 16 3 C -0.18 -2.46 9.82 22.36 0.22 -2.24 16 4 C 0.09 1.38 11.18 84.67 0.95 2.32 16 5 N -0.52 -10.70 10.36 -195.85 -2.03 -12.73 16 6 C 0.09 1.77 10.83 84.68 0.92 2.69 16 7 C -0.13 -2.33 5.45 -19.77 -0.11 -2.44 16 8 C 0.06 1.09 4.09 85.56 0.35 1.44 16 9 N -0.47 -9.23 5.58 -922.88 -5.15 -14.38 16 10 C 0.06 1.52 6.38 86.17 0.55 2.07 16 11 C -0.13 -3.07 3.04 -52.35 -0.16 -3.23 16 12 C -0.10 -2.41 10.24 30.47 0.31 -2.10 16 13 C -0.18 -4.97 5.94 -11.71 -0.07 -5.04 16 14 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 15 C 0.55 20.25 7.84 87.66 0.69 20.94 16 16 O -0.59 -24.22 15.86 -3.03 -0.05 -24.27 16 17 N -0.64 -25.06 3.61 -836.73 -3.02 -28.08 16 18 C 0.12 4.80 8.39 86.48 0.73 5.52 16 19 C 0.00 0.02 3.10 -10.87 -0.03 -0.02 16 20 C -0.60 -30.77 8.77 25.60 0.22 -30.54 16 21 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 22 C -0.02 -1.10 5.46 84.66 0.46 -0.64 16 23 N -0.93 -51.98 13.65 21.45 0.29 -51.69 16 24 Si 1.11 46.26 29.90 68.60 2.05 48.31 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 26 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 27 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.11 4.60 8.12 86.49 0.70 5.30 16 29 C 0.05 1.00 7.97 86.16 0.69 1.69 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.07 1.16 6.54 -2.39 -0.02 1.14 16 33 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 34 H 0.18 1.78 8.06 -2.91 -0.02 1.75 16 35 H 0.16 2.47 8.04 -2.91 -0.02 2.45 16 36 H 0.09 1.45 7.32 -2.39 -0.02 1.43 16 37 H 0.06 0.98 7.26 -2.39 -0.02 0.97 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.07 1.78 7.79 -2.38 -0.02 1.76 16 40 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 44 H 0.03 1.60 7.61 -2.39 -0.02 1.58 16 45 H 0.26 14.56 7.04 -92.70 -0.65 13.91 16 46 H 0.08 3.20 8.09 -2.39 -0.02 3.18 16 47 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 48 H 0.09 1.44 7.48 -2.39 -0.02 1.42 16 49 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -64.34 404.62 0.12 -64.22 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.06 Total: 24.36 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: 6.96 Total: -5.75 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -9.90 Total: -106.88 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.05 Total: 48.31 kcal Total: -64.34 0.12 -64.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.777 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds