Wall clock time and date at job start Wed Apr 1 2020 00:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38672 * 120.79294 * 2 1 4 4 C 1.38184 * 119.16280 * 180.27764 * 3 2 1 5 5 N 1.31881 * 120.76517 * 359.69143 * 4 3 2 6 6 C 1.31856 * 121.72745 * 0.03500 * 5 4 3 7 7 C 1.38219 * 120.76409 * 359.96879 * 6 5 4 8 8 C 1.50696 * 120.41929 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47014 * 93.67010 * 8 7 6 10 10 C 1.48561 * 111.00035 * 284.69710 * 9 8 7 11 11 C 1.54383 * 104.59691 * 159.03873 * 10 9 8 12 12 H 1.09000 * 118.15529 * 115.85341 * 11 10 9 13 13 C 1.52999 * 118.12543 * 272.76891 * 11 10 9 14 14 C 1.53001 * 60.54261 * 91.66635 * 13 11 10 15 15 C 1.50705 * 119.52407 * 111.73967 * 14 13 11 16 16 O 1.21280 * 119.99663 * 289.76340 * 15 14 13 17 17 N 1.34770 * 120.00334 * 109.76279 * 15 14 13 18 18 C 1.47069 * 136.05741 * 359.62994 * 17 15 14 19 19 C 1.53499 * 87.98628 * 207.37669 * 18 17 15 20 20 C 1.50701 * 114.38265 * 220.33277 * 19 18 17 21 21 H 1.07998 * 119.99781 * 93.69039 * 20 19 18 22 22 C 1.37876 * 119.99921 * 273.68105 * 20 19 18 23 23 N 1.31520 * 120.00055 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46701 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47347 * 119.99900 * 24 22 20 27 27 H 1.48493 * 109.46978 * 240.00029 * 24 22 20 28 28 C 1.47066 * 136.06004 * 179.97438 * 17 15 14 29 29 C 1.52149 * 110.66801 * 40.18302 * 9 8 7 30 30 H 1.09000 * 109.47308 * 275.83512 * 1 2 3 31 31 H 1.08999 * 109.47112 * 35.83791 * 1 2 3 32 32 H 1.09000 * 109.47163 * 155.83426 * 1 2 3 33 33 H 1.07999 * 120.41444 * 359.97016 * 3 2 1 34 34 H 1.08006 * 119.61457 * 179.72695 * 4 3 2 35 35 H 1.08001 * 119.61841 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47482 * 333.67345 * 8 7 6 37 37 H 1.09003 * 109.47318 * 213.66468 * 8 7 6 38 38 H 1.09002 * 110.40961 * 40.25967 * 10 9 8 39 39 H 1.09001 * 110.40686 * 277.81866 * 10 9 8 40 40 H 1.09003 * 117.44506 * 344.02081 * 13 11 10 41 41 H 1.08996 * 117.40478 * 199.32995 * 13 11 10 42 42 H 1.08998 * 113.46719 * 322.15852 * 18 17 15 43 43 H 1.09005 * 113.46871 * 92.59332 * 18 17 15 44 44 H 1.09000 * 114.20623 * 87.52149 * 19 18 17 45 45 H 0.96993 * 119.99991 * 179.97438 * 23 22 20 46 46 H 1.08996 * 113.47526 * 267.40710 * 28 17 15 47 47 H 1.08999 * 113.46474 * 37.84734 * 28 17 15 48 48 H 1.08995 * 112.21977 * 82.17949 * 29 9 8 49 49 H 1.09003 * 110.22218 * 318.61654 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0058 5 7 4.2403 0.0000 -0.0053 6 6 3.5983 -1.1517 0.0002 7 6 2.2166 -1.1910 0.0061 8 6 1.4909 -2.5116 0.0129 9 7 1.1832 -2.8942 1.3975 10 6 2.3990 -3.3827 2.0975 11 6 2.0734 -3.2256 3.5984 12 1 2.0138 -4.1267 4.2088 13 6 2.3746 -1.8818 4.2650 14 6 0.9907 -2.1286 3.6609 15 6 -0.2061 -2.2453 4.5692 16 8 -0.3330 -3.2175 5.2831 17 7 -1.1354 -1.2694 4.5883 18 6 -1.3326 0.0185 3.9061 19 6 -2.1353 0.4821 5.1296 20 6 -3.3652 1.2873 4.7981 21 1 -4.3227 0.7967 4.7043 22 6 -3.2681 2.6504 4.6147 23 7 -2.1020 3.2478 4.7286 24 14 -4.7929 3.6486 4.2045 25 1 -5.9706 2.7469 4.1339 26 1 -5.0146 4.6699 5.2595 27 1 -4.6056 4.3226 2.8947 28 6 -2.3953 -1.0206 5.3049 29 6 0.7422 -1.6819 2.2042 30 1 -0.3634 0.1045 1.0223 31 1 -0.3633 0.8331 -0.6017 32 1 -0.3633 -0.9376 -0.4207 33 1 1.6967 2.1377 -0.0005 34 1 4.1584 2.0753 -0.0104 35 1 4.1585 -2.0751 0.0000 36 1 2.1211 -3.2749 -0.4434 37 1 0.5638 -2.4197 -0.5531 38 1 3.2624 -2.7734 1.8300 39 1 2.5820 -4.4297 1.8557 40 1 3.0382 -1.1968 3.7373 41 1 2.4529 -1.8674 5.3520 42 1 -0.4083 0.5765 3.7564 43 1 -1.9308 -0.0584 2.9981 44 1 -1.5295 0.9263 5.9194 45 1 -2.0336 4.2067 4.5993 46 1 -3.2764 -1.3741 4.7694 47 1 -2.3747 -1.3463 6.3449 48 1 -0.3114 -1.4472 2.0530 49 1 1.3634 -0.8202 1.9596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277595518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:56 Heat of formation + Delta-G solvation = 88.374953 kcal Electronic energy + Delta-G solvation = -30914.548832 eV Core-core repulsion = 27037.301808 eV Total energy + Delta-G solvation = -3877.247024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24242 -39.99456 -38.72480 -36.96642 -35.33821 -33.63913 -32.73958 -31.23587 -29.79662 -28.58767 -27.94175 -26.88729 -25.36336 -25.01562 -23.65326 -22.80886 -22.30337 -21.12605 -20.42854 -19.71524 -18.12941 -16.95336 -16.75861 -16.67205 -16.45278 -15.85092 -15.76274 -15.35152 -14.77256 -14.66891 -14.42412 -14.03669 -13.84979 -13.62093 -13.29447 -13.18559 -13.07102 -12.83199 -12.78273 -12.49281 -12.42985 -12.31473 -11.66645 -11.59707 -11.56263 -11.44049 -11.30462 -11.23107 -11.00253 -10.84425 -10.45668 -10.37443 -10.14632 -9.66157 -9.59982 -9.46251 -9.25035 -9.13852 -8.98962 -8.63654 -8.57923 -7.89549 -6.23381 -4.28971 0.90432 1.08571 2.93397 3.18277 3.27874 3.31014 3.46145 3.57000 3.71340 3.84664 4.24889 4.28610 4.35650 4.51811 4.53351 4.60780 4.71011 4.74293 4.91563 5.01036 5.06831 5.09568 5.21576 5.29989 5.36992 5.41705 5.43615 5.47552 5.56723 5.64934 5.65904 5.72289 5.80372 5.85826 5.89838 6.01366 6.06405 6.13758 6.17092 6.18022 6.25366 6.41148 6.47311 6.50006 6.54509 6.63031 6.76270 6.78500 7.50915 7.74512 7.80248 8.13169 8.49276 8.75318 8.76799 9.38185 10.86217 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.004128 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.090856 B = 6780.714060 C = 8598.296509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.021 4.021 3 C -0.171 4.171 4 C 0.101 3.899 5 N -0.490 5.490 6 C 0.106 3.894 7 C -0.177 4.177 8 C 0.081 3.919 9 N -0.495 5.495 10 C 0.056 3.944 11 C -0.128 4.128 12 H 0.127 0.873 13 C -0.122 4.122 14 C -0.162 4.162 15 C 0.579 3.421 16 O -0.562 6.562 17 N -0.637 5.637 18 C 0.101 3.899 19 C 0.035 3.965 20 C -0.516 4.516 21 H 0.064 0.936 22 C 0.070 3.930 23 N -0.885 5.885 24 Si 0.893 3.107 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.100 3.900 29 C 0.063 3.937 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.155 0.845 35 H 0.151 0.849 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.263 0.737 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.234 -6.299 -11.274 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.191 4.191 4 C -0.056 4.056 5 N -0.199 5.199 6 C -0.051 4.051 7 C -0.181 4.181 8 C -0.047 4.047 9 N -0.217 5.217 10 C -0.072 4.072 11 C -0.147 4.147 12 H 0.145 0.855 13 C -0.160 4.160 14 C -0.166 4.166 15 C 0.368 3.632 16 O -0.443 6.443 17 N -0.370 5.370 18 C -0.022 4.022 19 C 0.016 3.984 20 C -0.554 4.554 21 H 0.082 0.918 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.721 3.279 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.022 4.022 29 C -0.063 4.063 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.168 0.832 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.116 0.884 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.875 -7.239 -10.980 17.065 hybrid contribution -1.008 1.408 -0.295 1.756 sum 9.867 -5.831 -11.274 16.077 Atomic orbital electron populations 1.21227 0.89874 1.03638 1.04290 1.20275 0.97060 0.92338 0.93334 1.22125 0.95638 0.99003 1.02348 1.22759 0.91843 0.96204 0.94777 1.67677 1.41164 0.98450 1.12618 1.22629 0.90883 0.96244 0.95371 1.21415 0.95666 0.97187 1.03830 1.21374 0.99992 0.91456 0.91923 1.66905 1.27364 1.26642 1.00793 1.22739 0.92006 1.01232 0.91228 1.23479 1.00871 0.93949 0.96420 0.85540 1.23100 0.94239 0.97665 1.00955 1.22351 0.90339 1.07324 0.96617 1.18583 0.82126 0.80690 0.81834 1.90630 1.78150 1.31279 1.44199 1.49845 1.22387 1.20760 1.44011 1.23577 0.99374 0.79688 0.99546 1.20349 0.95885 0.88758 0.93417 1.20944 0.93545 0.92097 1.48826 0.91757 1.25012 0.96046 0.97793 0.94537 1.69963 1.23456 1.10331 1.48447 0.86513 0.83173 0.80170 0.78065 1.19517 1.20855 1.20902 1.23361 0.84713 0.98269 0.95847 1.23679 1.02338 0.91958 0.88326 0.89113 0.90636 0.90536 0.84423 0.82773 0.83216 0.89623 0.88869 0.93005 0.89113 0.88622 0.87471 0.92383 0.91012 0.91410 0.92704 0.90829 0.92474 0.88428 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.42 36.00 0.30 -1.11 16 2 C -0.02 -0.24 4.22 -104.32 -0.44 -0.68 16 3 C -0.17 -1.86 9.84 -39.44 -0.39 -2.24 16 4 C 0.10 1.10 11.18 -17.55 -0.20 0.91 16 5 N -0.49 -5.95 10.36 -13.25 -0.14 -6.08 16 6 C 0.11 1.15 9.51 -17.55 -0.17 0.98 16 7 C -0.18 -1.88 3.79 -104.48 -0.40 -2.28 16 8 C 0.08 0.80 5.49 -4.98 -0.03 0.77 16 9 N -0.49 -6.06 5.71 -228.13 -1.30 -7.36 16 10 C 0.06 0.62 6.11 -2.18 -0.01 0.61 16 11 C -0.13 -1.74 6.77 -89.24 -0.60 -2.35 16 12 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 13 C -0.12 -1.70 9.85 -26.73 -0.26 -1.96 16 14 C -0.16 -2.61 2.66 -154.28 -0.41 -3.02 16 15 C 0.58 11.66 7.68 -10.99 -0.08 11.57 16 16 O -0.56 -12.96 17.59 5.56 0.10 -12.86 16 17 N -0.64 -12.92 3.61 -185.22 -0.67 -13.59 16 18 C 0.10 2.03 6.37 -8.51 -0.05 1.98 16 19 C 0.04 0.80 3.78 -91.25 -0.34 0.46 16 20 C -0.52 -12.72 8.83 -34.44 -0.30 -13.03 16 21 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 22 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.89 -23.30 13.26 55.43 0.74 -22.56 16 24 Si 0.89 19.47 29.54 -169.99 -5.02 14.45 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 C 0.10 2.08 8.18 -8.50 -0.07 2.01 16 29 C 0.06 0.89 3.73 -0.11 0.00 0.89 16 30 H 0.09 1.11 6.11 -51.93 -0.32 0.79 16 31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.15 1.32 7.66 -52.49 -0.40 0.92 16 36 H 0.09 0.69 7.94 -51.93 -0.41 0.28 16 37 H 0.09 0.88 6.17 -51.93 -0.32 0.55 16 38 H 0.05 0.54 5.89 -51.93 -0.31 0.24 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.40 8.04 -51.93 -0.42 0.98 16 44 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 45 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 46 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.10 1.48 5.23 -51.93 -0.27 1.21 16 49 H 0.07 0.95 4.62 -51.93 -0.24 0.71 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -29.63 386.30 -11.22 -40.85 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.19 Total: 6.18 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.56 Total: -4.84 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: -1.37 Total: -49.59 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.10 Total: -12.86 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.63 -11.22 -40.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.227 kcal (2) G-P(sol) polarization free energy of solvation -29.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds