Wall clock time and date at job start Wed Apr 1 2020 00:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38672 * 120.79294 * 2 1 4 4 C 1.38184 * 119.16280 * 180.27764 * 3 2 1 5 5 N 1.31881 * 120.76517 * 359.69143 * 4 3 2 6 6 C 1.31856 * 121.72745 * 0.03500 * 5 4 3 7 7 C 1.38219 * 120.76409 * 359.96879 * 6 5 4 8 8 C 1.50696 * 120.41929 * 180.02562 * 7 6 5 9 9 N 1.46904 * 109.47014 * 93.67010 * 8 7 6 10 10 C 1.48561 * 111.00035 * 284.69710 * 9 8 7 11 11 C 1.54383 * 104.59691 * 159.03873 * 10 9 8 12 12 H 1.09000 * 118.15529 * 115.85341 * 11 10 9 13 13 C 1.52999 * 118.12543 * 272.76891 * 11 10 9 14 14 C 1.53001 * 60.54261 * 91.66635 * 13 11 10 15 15 C 1.50705 * 119.52407 * 111.73967 * 14 13 11 16 16 O 1.21280 * 119.99663 * 289.76340 * 15 14 13 17 17 N 1.34770 * 120.00334 * 109.76279 * 15 14 13 18 18 C 1.47069 * 136.05741 * 359.62994 * 17 15 14 19 19 C 1.53499 * 87.98628 * 207.37669 * 18 17 15 20 20 C 1.50701 * 114.38265 * 220.33277 * 19 18 17 21 21 H 1.07998 * 119.99781 * 93.69039 * 20 19 18 22 22 C 1.37876 * 119.99921 * 273.68105 * 20 19 18 23 23 N 1.31520 * 120.00055 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46701 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47347 * 119.99900 * 24 22 20 27 27 H 1.48493 * 109.46978 * 240.00029 * 24 22 20 28 28 C 1.47066 * 136.06004 * 179.97438 * 17 15 14 29 29 C 1.52149 * 110.66801 * 40.18302 * 9 8 7 30 30 H 1.09000 * 109.47308 * 275.83512 * 1 2 3 31 31 H 1.08999 * 109.47112 * 35.83791 * 1 2 3 32 32 H 1.09000 * 109.47163 * 155.83426 * 1 2 3 33 33 H 1.07999 * 120.41444 * 359.97016 * 3 2 1 34 34 H 1.08006 * 119.61457 * 179.72695 * 4 3 2 35 35 H 1.08001 * 119.61841 * 179.97438 * 6 5 4 36 36 H 1.08994 * 109.47482 * 333.67345 * 8 7 6 37 37 H 1.09003 * 109.47318 * 213.66468 * 8 7 6 38 38 H 1.09002 * 110.40961 * 40.25967 * 10 9 8 39 39 H 1.09001 * 110.40686 * 277.81866 * 10 9 8 40 40 H 1.09003 * 117.44506 * 344.02081 * 13 11 10 41 41 H 1.08996 * 117.40478 * 199.32995 * 13 11 10 42 42 H 1.08998 * 113.46719 * 322.15852 * 18 17 15 43 43 H 1.09005 * 113.46871 * 92.59332 * 18 17 15 44 44 H 1.09000 * 114.20623 * 87.52149 * 19 18 17 45 45 H 0.96993 * 119.99991 * 179.97438 * 23 22 20 46 46 H 1.08996 * 113.47526 * 267.40710 * 28 17 15 47 47 H 1.08999 * 113.46474 * 37.84734 * 28 17 15 48 48 H 1.08995 * 112.21977 * 82.17949 * 29 9 8 49 49 H 1.09003 * 110.22218 * 318.61654 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1519 -0.0058 5 7 4.2403 0.0000 -0.0053 6 6 3.5983 -1.1517 0.0002 7 6 2.2166 -1.1910 0.0061 8 6 1.4909 -2.5116 0.0129 9 7 1.1832 -2.8942 1.3975 10 6 2.3990 -3.3827 2.0975 11 6 2.0734 -3.2256 3.5984 12 1 2.0138 -4.1267 4.2088 13 6 2.3746 -1.8818 4.2650 14 6 0.9907 -2.1286 3.6609 15 6 -0.2061 -2.2453 4.5692 16 8 -0.3330 -3.2175 5.2831 17 7 -1.1354 -1.2694 4.5883 18 6 -1.3326 0.0185 3.9061 19 6 -2.1353 0.4821 5.1296 20 6 -3.3652 1.2873 4.7981 21 1 -4.3227 0.7967 4.7043 22 6 -3.2681 2.6504 4.6147 23 7 -2.1020 3.2478 4.7286 24 14 -4.7929 3.6486 4.2045 25 1 -5.9706 2.7469 4.1339 26 1 -5.0146 4.6699 5.2595 27 1 -4.6056 4.3226 2.8947 28 6 -2.3953 -1.0206 5.3049 29 6 0.7422 -1.6819 2.2042 30 1 -0.3634 0.1045 1.0223 31 1 -0.3633 0.8331 -0.6017 32 1 -0.3633 -0.9376 -0.4207 33 1 1.6967 2.1377 -0.0005 34 1 4.1584 2.0753 -0.0104 35 1 4.1585 -2.0751 0.0000 36 1 2.1211 -3.2749 -0.4434 37 1 0.5638 -2.4197 -0.5531 38 1 3.2624 -2.7734 1.8300 39 1 2.5820 -4.4297 1.8557 40 1 3.0382 -1.1968 3.7373 41 1 2.4529 -1.8674 5.3520 42 1 -0.4083 0.5765 3.7564 43 1 -1.9308 -0.0584 2.9981 44 1 -1.5295 0.9263 5.9194 45 1 -2.0336 4.2067 4.5993 46 1 -3.2764 -1.3741 4.7694 47 1 -2.3747 -1.3463 6.3449 48 1 -0.3114 -1.4472 2.0530 49 1 1.3634 -0.8202 1.9596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277595518.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:55 Heat of formation + Delta-G solvation = 70.425804 kcal Electronic energy + Delta-G solvation = -30915.327166 eV Core-core repulsion = 27037.301808 eV Total energy + Delta-G solvation = -3878.025358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.23212 -41.23328 -40.10097 -38.53514 -36.33976 -34.65623 -34.50126 -32.09551 -31.35986 -29.72137 -28.91504 -27.77523 -27.13774 -26.69434 -24.57466 -24.05099 -23.33602 -22.24219 -21.39164 -21.22653 -19.60044 -18.71124 -17.97417 -17.56461 -17.52480 -17.18504 -16.85171 -16.57731 -16.33412 -16.07998 -15.62927 -15.12529 -14.92116 -14.75381 -14.59288 -14.27884 -14.15529 -13.93774 -13.88104 -13.61228 -13.53849 -13.49243 -13.24772 -13.20581 -12.86805 -12.73893 -12.55569 -12.40014 -12.39015 -12.19609 -12.09990 -11.62499 -11.35887 -11.20111 -11.07186 -10.71716 -10.51954 -10.49319 -10.31173 -9.95757 -9.59785 -9.49880 -8.16149 -6.27284 0.10661 0.26254 1.44492 1.46072 1.50605 1.60427 1.91714 2.46426 2.49371 2.72149 2.92971 3.13912 3.25155 3.48016 3.51021 3.53849 3.72932 3.79257 3.88556 3.91872 3.94014 4.09937 4.21191 4.33324 4.37443 4.42679 4.45409 4.50741 4.54672 4.55840 4.59650 4.63939 4.65967 4.68502 4.77925 4.80682 4.82076 4.88982 4.91286 4.95647 5.02651 5.07364 5.12768 5.23167 5.33927 5.58745 5.59163 5.75947 5.81153 5.90089 6.22744 6.81320 6.86138 6.99866 7.13233 7.42984 8.93917 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.004128 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.090856 B = 6780.714060 C = 8598.296509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.032 4.032 3 C -0.181 4.181 4 C 0.093 3.907 5 N -0.511 5.511 6 C 0.102 3.898 7 C -0.177 4.177 8 C 0.083 3.917 9 N -0.503 5.503 10 C 0.061 3.939 11 C -0.113 4.113 12 H 0.121 0.879 13 C -0.114 4.114 14 C -0.189 4.189 15 C 0.573 3.427 16 O -0.597 6.597 17 N -0.639 5.639 18 C 0.123 3.877 19 C 0.024 3.976 20 C -0.526 4.526 21 H 0.066 0.934 22 C 0.026 3.974 23 N -0.916 5.916 24 Si 0.955 3.045 25 H -0.265 1.265 26 H -0.285 1.285 27 H -0.278 1.278 28 C 0.103 3.897 29 C 0.077 3.923 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.171 0.829 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.100 0.900 42 H 0.054 0.946 43 H 0.082 0.918 44 H 0.037 0.963 45 H 0.264 0.736 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.082 0.918 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.745 -6.895 -13.128 18.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.041 4.041 3 C -0.201 4.201 4 C -0.064 4.064 5 N -0.220 5.220 6 C -0.055 4.055 7 C -0.180 4.180 8 C -0.045 4.045 9 N -0.225 5.225 10 C -0.066 4.066 11 C -0.132 4.132 12 H 0.138 0.862 13 C -0.151 4.151 14 C -0.193 4.193 15 C 0.364 3.636 16 O -0.480 6.480 17 N -0.371 5.371 18 C 0.001 3.999 19 C 0.005 3.995 20 C -0.564 4.564 21 H 0.085 0.915 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.780 3.220 25 H -0.189 1.189 26 H -0.212 1.212 27 H -0.203 1.203 28 C -0.019 4.019 29 C -0.050 4.050 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.164 0.836 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.131 0.869 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.100 0.900 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.385 -7.838 -12.845 18.870 hybrid contribution -1.154 1.562 0.342 1.972 sum 10.231 -6.276 -12.503 17.332 Atomic orbital electron populations 1.21185 0.89832 1.04463 1.03251 1.20431 0.97253 0.92839 0.93542 1.22306 0.95872 0.99463 1.02435 1.23093 0.92103 0.96766 0.94394 1.67713 1.41815 0.99108 1.13397 1.22986 0.91121 0.96687 0.94729 1.21475 0.95689 0.97255 1.03619 1.21464 1.00700 0.91759 0.90549 1.66884 1.28159 1.25701 1.01752 1.22829 0.91958 1.02828 0.89034 1.23644 0.98387 0.93155 0.98057 0.86151 1.23137 0.92726 0.98437 1.00834 1.22375 0.89396 1.10436 0.97102 1.19304 0.82756 0.79814 0.81733 1.90597 1.79032 1.32505 1.45851 1.49869 1.22381 1.20953 1.43856 1.23270 0.98716 0.79288 0.98617 1.20221 0.95684 0.89686 0.93900 1.21198 0.94076 0.92616 1.48520 0.91540 1.25694 0.98498 0.98753 0.94477 1.70065 1.25242 1.10592 1.49540 0.85553 0.80096 0.78593 0.77719 1.18870 1.21157 1.20347 1.23272 0.85663 0.96825 0.96113 1.23482 1.01538 0.92729 0.87242 0.91007 0.89917 0.89690 0.83633 0.81034 0.81165 0.87129 0.88456 0.91660 0.86884 0.87247 0.88119 0.92769 0.90003 0.94521 0.92652 0.89669 0.92766 0.89923 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 8.42 71.23 0.60 -2.04 16 2 C -0.03 -0.66 4.22 -19.67 -0.08 -0.75 16 3 C -0.18 -3.72 9.84 22.36 0.22 -3.50 16 4 C 0.09 1.90 11.18 84.67 0.95 2.84 16 5 N -0.51 -11.43 10.36 -195.84 -2.03 -13.46 16 6 C 0.10 1.94 9.51 84.68 0.81 2.75 16 7 C -0.18 -3.34 3.79 -19.77 -0.07 -3.41 16 8 C 0.08 1.39 5.49 85.55 0.47 1.86 16 9 N -0.50 -11.08 5.71 -875.66 -5.00 -16.08 16 10 C 0.06 1.18 6.11 86.45 0.53 1.71 16 11 C -0.11 -2.90 6.77 -9.90 -0.07 -2.96 16 12 H 0.12 3.25 8.14 -2.39 -0.02 3.23 16 13 C -0.11 -3.06 9.85 30.59 0.30 -2.76 16 14 C -0.19 -5.96 2.66 -52.03 -0.14 -6.10 16 15 C 0.57 23.25 7.68 87.66 0.67 23.92 16 16 O -0.60 -27.87 17.59 -3.03 -0.05 -27.92 16 17 N -0.64 -26.20 3.61 -858.30 -3.10 -29.30 16 18 C 0.12 5.04 6.37 83.18 0.53 5.57 16 19 C 0.02 1.14 3.78 -11.20 -0.04 1.10 16 20 C -0.53 -26.05 8.83 25.60 0.23 -25.83 16 21 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 22 C 0.03 1.32 5.46 84.65 0.46 1.78 16 23 N -0.92 -48.74 13.26 21.45 0.28 -48.45 16 24 Si 0.95 39.68 29.54 68.60 2.03 41.70 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 28 C 0.10 4.36 8.18 83.18 0.68 5.04 16 29 C 0.08 2.07 3.73 85.72 0.32 2.39 16 30 H 0.07 1.74 6.11 -2.39 -0.01 1.72 16 31 H 0.08 1.49 8.13 -2.39 -0.02 1.48 16 32 H 0.08 1.52 5.95 -2.39 -0.01 1.50 16 33 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 35 H 0.17 2.40 7.66 -2.91 -0.02 2.37 16 36 H 0.11 1.33 7.94 -2.39 -0.02 1.31 16 37 H 0.10 1.57 6.17 -2.39 -0.01 1.55 16 38 H 0.07 1.12 5.89 -2.39 -0.01 1.11 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 42 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.08 3.18 8.04 -2.38 -0.02 3.16 16 44 H 0.04 1.93 8.11 -2.39 -0.02 1.91 16 45 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 46 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 47 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.08 2.47 5.23 -2.39 -0.01 2.46 16 49 H 0.07 1.82 4.62 -2.39 -0.01 1.80 16 Total: -1.00 -63.42 386.30 -0.55 -63.97 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.96 Total: 27.93 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 6.36 Total: 1.61 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -9.84 Total: -107.29 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Total: -63.42 -0.55 -63.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277595518.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.392 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds