Wall clock time and date at job start Wed Apr 1 2020 00:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34663 * 125.79993 * 2 1 4 4 H 0.96995 * 124.85190 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29778 * 180.29643 * 3 2 1 6 6 C 1.34488 * 108.85150 * 359.74573 * 5 3 2 7 7 C 1.36765 * 125.80459 * 179.86443 * 2 1 3 8 8 C 1.47269 * 126.93863 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00128 * 359.71208 * 8 7 2 10 10 N 1.34778 * 119.99670 * 179.70734 * 8 7 2 11 11 C 1.46496 * 119.99538 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47099 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.46951 * 54.99767 * 13 12 11 15 15 C 1.52997 * 109.47022 * 174.99789 * 13 12 11 16 16 C 1.50706 * 109.47198 * 184.99797 * 15 13 12 17 17 C 1.38238 * 119.99775 * 90.00136 * 16 15 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38233 * 120.00212 * 270.02182 * 16 15 13 22 22 N 1.46500 * 109.47099 * 294.99538 * 13 12 11 23 23 C 1.36928 * 120.00206 * 300.00457 * 22 13 12 24 24 H 1.08003 * 120.00236 * 359.97438 * 23 22 13 25 25 C 1.38814 * 120.00173 * 180.02562 * 23 22 13 26 26 N 1.31619 * 120.00137 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 120.00011 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46765 * 89.99965 * 27 25 23 29 29 H 1.48491 * 109.47230 * 210.00188 * 27 25 23 30 30 H 1.48499 * 109.47095 * 330.00510 * 27 25 23 31 31 H 1.09001 * 109.47405 * 270.13676 * 1 2 3 32 32 H 1.09001 * 109.47049 * 30.13636 * 1 2 3 33 33 H 1.09003 * 109.47000 * 150.13743 * 1 2 3 34 34 H 1.07994 * 125.57390 * 179.72514 * 5 3 2 35 35 H 1.08005 * 126.82976 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00021 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47603 * 59.99862 * 11 10 8 38 38 H 1.09004 * 109.47527 * 299.99896 * 11 10 8 39 39 H 1.08995 * 109.47557 * 59.99887 * 12 11 10 40 40 H 1.09002 * 109.47011 * 299.99660 * 12 11 10 41 41 H 1.09003 * 109.47286 * 65.00148 * 15 13 12 42 42 H 1.09002 * 109.47284 * 304.99570 * 15 13 12 43 43 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 44 44 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 45 45 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 46 46 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 47 47 H 1.07999 * 119.99956 * 0.02562 * 21 16 15 48 48 H 0.97003 * 119.99428 * 120.00064 * 22 13 12 49 49 H 0.97006 * 119.99899 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0054 7 6 2.3071 -1.1092 0.0026 8 6 1.8702 -2.5156 0.0065 9 8 0.6840 -2.7839 0.0129 10 7 2.7850 -3.5053 0.0028 11 6 2.3504 -4.9043 0.0061 12 6 3.5767 -5.8193 0.0014 13 6 3.1228 -7.2805 0.0055 14 1 2.4481 -7.4536 -0.8329 15 6 4.3432 -8.1939 -0.1249 16 6 3.8886 -9.6258 -0.2444 17 6 3.6374 -10.1695 -1.4903 18 6 3.2208 -11.4830 -1.5998 19 6 3.0561 -12.2530 -0.4637 20 6 3.3021 -11.7077 0.7825 21 6 3.7223 -10.3953 0.8919 22 7 2.4266 -7.5721 1.2610 23 6 3.0790 -7.4249 2.4559 24 1 4.1070 -7.0943 2.4727 25 6 2.4194 -7.7017 3.6455 26 7 3.0467 -7.5608 4.7940 27 14 0.6415 -8.2743 3.6165 28 1 0.6001 -9.7566 3.5374 29 1 -0.0434 -7.8253 4.8551 30 1 -0.0454 -7.6961 2.4336 31 1 -0.3634 0.0025 1.0277 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 4.4497 1.4060 -0.0123 35 1 4.5890 -1.2109 -0.0091 36 1 3.7311 -3.2913 -0.0028 37 1 1.7475 -5.0997 -0.8808 38 1 1.7563 -5.0982 0.8991 39 1 4.1792 -5.6240 0.8884 40 1 4.1711 -5.6256 -0.8915 41 1 4.9742 -8.0855 0.7573 42 1 4.9107 -7.9176 -1.0136 43 1 3.7665 -9.5681 -2.3780 44 1 3.0241 -11.9077 -2.5732 45 1 2.7310 -13.2794 -0.5494 46 1 3.1692 -12.3079 1.6704 47 1 3.9179 -9.9703 1.8653 48 1 1.5033 -7.8693 1.2458 49 1 2.5856 -7.7539 5.6254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278533657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:04 Heat of formation + Delta-G solvation = 34.071564 kcal Electronic energy + Delta-G solvation = -28940.714484 eV Core-core repulsion = 25061.112688 eV Total energy + Delta-G solvation = -3879.601796 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.27521 -38.97551 -38.67326 -36.59191 -34.28653 -32.41533 -31.65044 -31.44009 -30.83651 -30.34826 -29.48782 -27.27033 -26.27347 -24.06826 -23.26373 -22.01636 -21.82586 -20.84607 -20.52297 -19.65613 -18.91517 -17.84668 -17.70735 -16.24740 -15.78113 -15.45432 -15.34656 -15.00352 -14.64439 -14.48641 -14.21521 -14.00139 -13.88456 -13.45747 -13.09286 -13.02382 -12.92441 -12.86928 -12.77551 -12.71571 -12.60878 -12.42760 -11.70765 -11.64904 -11.59123 -11.46700 -10.97146 -10.88240 -10.76707 -10.42932 -10.34569 -10.17919 -9.92228 -9.53620 -9.41907 -8.95697 -8.91540 -8.57136 -8.40407 -8.20495 -8.12350 -7.21803 -5.73880 -3.08356 1.80741 1.86443 1.94428 2.35660 3.01313 3.43853 3.49020 3.52510 3.75066 3.82527 4.31892 4.64554 4.74126 4.88375 5.10261 5.19566 5.24240 5.31008 5.37018 5.43001 5.46092 5.50356 5.56981 5.58625 5.68243 5.78152 5.81900 5.89840 5.96905 6.01669 6.06849 6.11928 6.14722 6.25081 6.34663 6.38386 6.53281 6.64388 6.67140 6.73191 6.80149 6.84238 6.90897 6.96080 6.98070 7.09430 7.31633 7.33346 7.58520 7.98741 8.00729 8.44982 8.69821 9.23987 9.97789 10.17395 11.43937 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.002717 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.886797 B =10303.499709 C =11432.070069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.100 3.900 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.021 4.021 6 C -0.167 4.167 7 C -0.230 4.230 8 C 0.586 3.414 9 O -0.555 6.555 10 N -0.720 5.720 11 C 0.129 3.871 12 C -0.139 4.139 13 C 0.193 3.807 14 H 0.056 0.944 15 C -0.094 4.094 16 C -0.057 4.057 17 C -0.130 4.130 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.087 4.087 22 N -0.742 5.742 23 C -0.234 4.234 24 H 0.092 0.908 25 C 0.010 3.990 26 N -0.933 5.933 27 Si 0.875 3.125 28 H -0.285 1.285 29 H -0.294 1.294 30 H -0.276 1.276 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.145 0.855 36 H 0.396 0.604 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.114 0.886 47 H 0.138 0.862 48 H 0.363 0.637 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 10.781 -13.870 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.017 4.017 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.148 4.148 6 C -0.191 4.191 7 C -0.240 4.240 8 C 0.374 3.626 9 O -0.435 6.435 10 N -0.370 5.370 11 C 0.006 3.994 12 C -0.179 4.179 13 C 0.082 3.918 14 H 0.074 0.926 15 C -0.133 4.133 16 C -0.057 4.057 17 C -0.148 4.148 18 C -0.150 4.150 19 C -0.155 4.155 20 C -0.145 4.145 21 C -0.105 4.105 22 N -0.384 5.384 23 C -0.364 4.364 24 H 0.109 0.891 25 C -0.186 4.186 26 N -0.581 5.581 27 Si 0.705 3.295 28 H -0.212 1.212 29 H -0.221 1.221 30 H -0.202 1.202 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.185 0.815 35 H 0.163 0.837 36 H 0.230 0.770 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.132 0.868 47 H 0.156 0.844 48 H 0.195 0.805 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.641 10.727 -13.666 17.451 hybrid contribution -0.838 0.093 0.275 0.887 sum 0.803 10.820 -13.392 17.235 Atomic orbital electron populations 1.20570 0.87066 1.04020 1.03534 1.20348 0.93727 0.85654 1.01982 1.41576 1.06274 1.08294 1.58998 0.75001 1.21684 0.85618 0.96452 1.11076 1.22065 0.95927 0.93667 1.07457 1.20252 0.93167 0.92383 1.18183 1.17323 0.85445 0.84015 0.75811 1.90722 1.16736 1.84488 1.51559 1.45827 1.09422 1.06607 1.75151 1.21303 0.97471 0.78277 1.02332 1.22234 0.97120 0.96885 1.01670 1.20014 0.92386 0.90425 0.89004 0.92567 1.21135 0.99219 0.91212 1.01744 1.19850 0.97577 0.95795 0.92484 1.20997 1.01446 0.95275 0.97044 1.20944 1.01592 0.94669 0.97842 1.20993 1.02155 0.99369 0.93000 1.21186 1.00197 0.96085 0.97021 1.21415 0.96481 0.92832 0.99771 1.42762 1.12289 1.81414 1.01905 1.18890 0.97388 1.37896 0.82225 0.89066 1.24585 0.97093 1.01641 0.95274 1.69691 1.36319 1.55271 0.96785 0.86691 0.87136 0.78737 0.76894 1.21175 1.22106 1.20180 0.90436 0.92112 0.87946 0.81484 0.83711 0.77027 0.92839 0.90076 0.90337 0.92870 0.90086 0.92432 0.86903 0.87136 0.87196 0.86829 0.84374 0.80479 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 9.88 36.01 0.36 -0.66 16 2 C 0.10 1.20 7.17 -81.88 -0.59 0.61 16 3 N -0.56 -4.77 5.90 -9.11 -0.05 -4.82 16 4 H 0.41 2.08 8.96 -40.82 -0.37 1.71 16 5 C -0.02 -0.19 11.89 -16.82 -0.20 -0.39 16 6 C -0.17 -1.86 10.56 -37.50 -0.40 -2.26 16 7 C -0.23 -3.25 6.29 -103.35 -0.65 -3.90 16 8 C 0.59 10.02 7.81 -12.59 -0.10 9.92 16 9 O -0.55 -11.21 14.82 5.26 0.08 -11.13 16 10 N -0.72 -11.25 5.55 -61.43 -0.34 -11.59 16 11 C 0.13 2.23 5.56 -4.04 -0.02 2.21 16 12 C -0.14 -2.21 4.73 -26.73 -0.13 -2.34 16 13 C 0.19 3.35 2.67 -67.93 -0.18 3.17 16 14 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.09 -1.53 4.75 -27.88 -0.13 -1.67 16 16 C -0.06 -0.97 4.95 -104.62 -0.52 -1.49 16 17 C -0.13 -1.95 9.70 -39.58 -0.38 -2.33 16 18 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 19 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 20 C -0.13 -2.14 10.05 -39.58 -0.40 -2.54 16 21 C -0.09 -1.62 9.31 -39.58 -0.37 -1.99 16 22 N -0.74 -16.01 3.93 -53.43 -0.21 -16.22 16 23 C -0.23 -5.94 8.36 -15.06 -0.13 -6.06 16 24 H 0.09 2.47 6.87 -52.48 -0.36 2.11 16 25 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 26 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 27 Si 0.87 22.10 27.74 -169.99 -4.71 17.39 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 30 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 1.34 6.47 -51.93 -0.34 1.00 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.15 1.34 7.70 -52.48 -0.40 0.94 16 36 H 0.40 5.13 7.60 -40.82 -0.31 4.82 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.72 7.75 -51.93 -0.40 1.32 16 39 H 0.08 1.40 7.11 -51.93 -0.37 1.03 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.49 7.05 -51.93 -0.37 1.12 16 42 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 43 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 45 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 46 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 47 H 0.14 2.94 7.36 -52.49 -0.39 2.55 16 48 H 0.36 8.21 5.89 -40.82 -0.24 7.97 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -33.46 402.07 -10.49 -43.95 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -7.36 Total: 18.10 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -4.72 Total: -14.27 kcal Atomic # 7 Polarization: -60.26 SS G_CDS: 0.17 Total: -60.09 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.46 -10.49 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278533657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.022 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds