Wall clock time and date at job start Wed Apr 1 2020 00:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34663 * 125.79993 * 2 1 4 4 H 0.96995 * 124.85190 * 0.02562 * 3 2 1 5 5 C 1.36450 * 110.29778 * 180.29643 * 3 2 1 6 6 C 1.34488 * 108.85150 * 359.74573 * 5 3 2 7 7 C 1.36765 * 125.80459 * 179.86443 * 2 1 3 8 8 C 1.47269 * 126.93863 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00128 * 359.71208 * 8 7 2 10 10 N 1.34778 * 119.99670 * 179.70734 * 8 7 2 11 11 C 1.46496 * 119.99538 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.46877 * 180.02562 * 11 10 8 13 13 C 1.53002 * 109.47099 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.46951 * 54.99767 * 13 12 11 15 15 C 1.52997 * 109.47022 * 174.99789 * 13 12 11 16 16 C 1.50706 * 109.47198 * 184.99797 * 15 13 12 17 17 C 1.38238 * 119.99775 * 90.00136 * 16 15 13 18 18 C 1.38235 * 119.99712 * 179.97438 * 17 16 15 19 19 C 1.38234 * 120.00220 * 359.97124 * 18 17 16 20 20 C 1.38233 * 120.00037 * 0.28719 * 19 18 17 21 21 C 1.38233 * 120.00212 * 270.02182 * 16 15 13 22 22 N 1.46500 * 109.47099 * 294.99538 * 13 12 11 23 23 C 1.36928 * 120.00206 * 300.00457 * 22 13 12 24 24 H 1.08003 * 120.00236 * 359.97438 * 23 22 13 25 25 C 1.38814 * 120.00173 * 180.02562 * 23 22 13 26 26 N 1.31619 * 120.00137 * 179.97438 * 25 23 22 27 27 Si 1.86805 * 120.00011 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.46765 * 89.99965 * 27 25 23 29 29 H 1.48491 * 109.47230 * 210.00188 * 27 25 23 30 30 H 1.48499 * 109.47095 * 330.00510 * 27 25 23 31 31 H 1.09001 * 109.47405 * 270.13676 * 1 2 3 32 32 H 1.09001 * 109.47049 * 30.13636 * 1 2 3 33 33 H 1.09003 * 109.47000 * 150.13743 * 1 2 3 34 34 H 1.07994 * 125.57390 * 179.72514 * 5 3 2 35 35 H 1.08005 * 126.82976 * 180.02562 * 6 5 3 36 36 H 0.96997 * 120.00021 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.47603 * 59.99862 * 11 10 8 38 38 H 1.09004 * 109.47527 * 299.99896 * 11 10 8 39 39 H 1.08995 * 109.47557 * 59.99887 * 12 11 10 40 40 H 1.09002 * 109.47011 * 299.99660 * 12 11 10 41 41 H 1.09003 * 109.47286 * 65.00148 * 15 13 12 42 42 H 1.09002 * 109.47284 * 304.99570 * 15 13 12 43 43 H 1.08005 * 120.00068 * 359.97438 * 17 16 15 44 44 H 1.07999 * 119.99770 * 179.97438 * 18 17 16 45 45 H 1.08002 * 119.99744 * 180.02562 * 19 18 17 46 46 H 1.07998 * 120.00395 * 179.72811 * 20 19 18 47 47 H 1.07999 * 119.99956 * 0.02562 * 21 16 15 48 48 H 0.97003 * 119.99428 * 120.00064 * 22 13 12 49 49 H 0.97006 * 119.99899 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0074 0.0004 5 6 3.6096 0.7275 -0.0066 6 6 3.6882 -0.6151 -0.0054 7 6 2.3071 -1.1092 0.0026 8 6 1.8702 -2.5156 0.0065 9 8 0.6840 -2.7839 0.0129 10 7 2.7850 -3.5053 0.0028 11 6 2.3504 -4.9043 0.0061 12 6 3.5767 -5.8193 0.0014 13 6 3.1228 -7.2805 0.0055 14 1 2.4481 -7.4536 -0.8329 15 6 4.3432 -8.1939 -0.1249 16 6 3.8886 -9.6258 -0.2444 17 6 3.6374 -10.1695 -1.4903 18 6 3.2208 -11.4830 -1.5998 19 6 3.0561 -12.2530 -0.4637 20 6 3.3021 -11.7077 0.7825 21 6 3.7223 -10.3953 0.8919 22 7 2.4266 -7.5721 1.2610 23 6 3.0790 -7.4249 2.4559 24 1 4.1070 -7.0943 2.4727 25 6 2.4194 -7.7017 3.6455 26 7 3.0467 -7.5608 4.7940 27 14 0.6415 -8.2743 3.6165 28 1 0.6001 -9.7566 3.5374 29 1 -0.0434 -7.8253 4.8551 30 1 -0.0454 -7.6961 2.4336 31 1 -0.3634 0.0025 1.0277 32 1 -0.3633 0.8888 -0.5160 33 1 -0.3633 -0.8912 -0.5117 34 1 4.4497 1.4060 -0.0123 35 1 4.5890 -1.2109 -0.0091 36 1 3.7311 -3.2913 -0.0028 37 1 1.7475 -5.0997 -0.8808 38 1 1.7563 -5.0982 0.8991 39 1 4.1792 -5.6240 0.8884 40 1 4.1711 -5.6256 -0.8915 41 1 4.9742 -8.0855 0.7573 42 1 4.9107 -7.9176 -1.0136 43 1 3.7665 -9.5681 -2.3780 44 1 3.0241 -11.9077 -2.5732 45 1 2.7310 -13.2794 -0.5494 46 1 3.1692 -12.3079 1.6704 47 1 3.9179 -9.9703 1.8653 48 1 1.5033 -7.8693 1.2458 49 1 2.5856 -7.7539 5.6254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278533657.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:02 Heat of formation + Delta-G solvation = 12.490070 kcal Electronic energy + Delta-G solvation = -28941.650328 eV Core-core repulsion = 25061.112688 eV Total energy + Delta-G solvation = -3880.537640 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11946 -40.28259 -39.94437 -38.10371 -35.73835 -34.25782 -32.71620 -32.42988 -32.17494 -31.58169 -31.01370 -28.58722 -27.18810 -25.79487 -24.70574 -23.26496 -23.00926 -22.03750 -21.45531 -21.06552 -20.32902 -19.67042 -18.55076 -17.47101 -16.94141 -16.85046 -16.73644 -16.31324 -16.23176 -15.81861 -15.65350 -15.32870 -14.91938 -14.80405 -14.41437 -14.36344 -14.22762 -14.12311 -13.96683 -13.88345 -13.58754 -13.42403 -13.37730 -13.05501 -12.93522 -12.83976 -12.51910 -12.42180 -12.29378 -11.92211 -11.81424 -11.74892 -11.61339 -11.27944 -10.96838 -10.77987 -10.05944 -9.67912 -9.66417 -9.46887 -9.11502 -9.07815 -7.92513 -5.20591 0.62771 0.68794 0.77990 1.37254 1.39549 1.43561 1.57844 2.20088 2.53586 2.60340 2.65641 3.06012 3.42112 3.67259 3.94249 3.99803 4.07303 4.17174 4.21947 4.29846 4.30511 4.36767 4.37671 4.45333 4.62114 4.64540 4.67978 4.71065 4.77751 4.81430 4.87523 4.95487 5.00385 5.07223 5.08443 5.18665 5.26533 5.34851 5.37213 5.43898 5.53130 5.63364 5.72117 5.80033 5.82053 5.89359 6.00796 6.04572 6.31585 6.32902 6.66679 6.79664 7.18983 7.43524 7.97119 8.13074 9.29241 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.002717 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.886797 B =10303.499709 C =11432.070069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.095 3.905 3 N -0.538 5.538 4 H 0.433 0.567 5 C 0.000 4.000 6 C -0.189 4.189 7 C -0.271 4.271 8 C 0.576 3.424 9 O -0.598 6.598 10 N -0.714 5.714 11 C 0.138 3.862 12 C -0.125 4.125 13 C 0.186 3.814 14 H 0.078 0.922 15 C -0.085 4.085 16 C -0.071 4.071 17 C -0.126 4.126 18 C -0.127 4.127 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.116 4.116 22 N -0.745 5.745 23 C -0.181 4.181 24 H 0.070 0.930 25 C -0.058 4.058 26 N -0.984 5.984 27 Si 0.927 3.073 28 H -0.285 1.285 29 H -0.309 1.309 30 H -0.263 1.263 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.210 0.790 35 H 0.158 0.842 36 H 0.410 0.590 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.145 0.855 44 H 0.147 0.853 45 H 0.138 0.862 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.359 0.641 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 12.034 -17.883 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.025 4.025 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.128 4.128 6 C -0.213 4.213 7 C -0.281 4.281 8 C 0.366 3.634 9 O -0.481 6.481 10 N -0.364 5.364 11 C 0.014 3.986 12 C -0.164 4.164 13 C 0.077 3.923 14 H 0.096 0.904 15 C -0.124 4.124 16 C -0.072 4.072 17 C -0.143 4.143 18 C -0.144 4.144 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.135 4.135 22 N -0.386 5.386 23 C -0.313 4.313 24 H 0.088 0.912 25 C -0.249 4.249 26 N -0.637 5.637 27 Si 0.758 3.242 28 H -0.212 1.212 29 H -0.237 1.237 30 H -0.188 1.188 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.227 0.773 35 H 0.175 0.825 36 H 0.246 0.754 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.156 0.844 46 H 0.131 0.869 47 H 0.114 0.886 48 H 0.191 0.809 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.292 12.013 -17.755 21.559 hybrid contribution -0.944 -0.253 1.365 1.679 sum 1.348 11.760 -16.390 20.218 Atomic orbital electron populations 1.20515 0.86741 1.04291 1.03403 1.20462 0.94277 0.86259 1.01506 1.41584 1.06038 1.08564 1.57299 0.72655 1.22321 0.86386 0.96209 1.07857 1.22313 0.95016 0.95050 1.08900 1.20263 0.95469 0.91161 1.21226 1.17919 0.84993 0.85553 0.74898 1.90685 1.18446 1.85347 1.53664 1.45720 1.10118 1.05777 1.74763 1.21067 0.97611 0.79661 1.00256 1.22094 0.96442 0.95323 1.02580 1.20355 0.93094 0.91400 0.87428 0.90374 1.21023 0.98255 0.90964 1.02128 1.19935 0.98408 0.95837 0.92978 1.21323 1.00152 0.95995 0.96866 1.21407 0.99657 0.94241 0.99133 1.21328 1.01038 1.00794 0.92182 1.21311 1.00885 0.95561 0.98471 1.21196 0.99287 0.94288 0.98711 1.42820 1.12172 1.81226 1.02334 1.18793 0.96056 1.33088 0.83336 0.91201 1.25113 1.00246 1.04171 0.95365 1.69830 1.37648 1.59014 0.97214 0.85814 0.83791 0.78205 0.76421 1.21164 1.23709 1.18805 0.90754 0.88620 0.90833 0.77301 0.82463 0.75436 0.92363 0.94737 0.92652 0.88613 0.93078 0.88640 0.83769 0.83502 0.84428 0.86889 0.88648 0.80933 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.88 71.24 0.70 -1.23 16 2 C 0.09 2.15 7.17 41.78 0.30 2.45 16 3 N -0.54 -7.60 5.90 -182.73 -1.08 -8.68 16 4 H 0.43 2.72 8.96 -92.71 -0.83 1.89 16 5 C 0.00 0.00 11.89 83.12 0.99 0.99 16 6 C -0.19 -3.86 10.56 23.62 0.25 -3.61 16 7 C -0.27 -7.57 6.29 -19.04 -0.12 -7.69 16 8 C 0.58 20.25 7.81 86.62 0.68 20.92 16 9 O -0.60 -25.34 14.82 -4.10 -0.06 -25.40 16 10 N -0.71 -22.46 5.55 -466.52 -2.59 -25.05 16 11 C 0.14 4.80 5.56 86.38 0.48 5.28 16 12 C -0.12 -3.83 4.73 30.60 0.14 -3.69 16 13 C 0.19 6.25 2.67 44.99 0.12 6.37 16 14 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 15 C -0.08 -2.66 4.75 29.85 0.14 -2.52 16 16 C -0.07 -2.34 4.95 -19.86 -0.10 -2.44 16 17 C -0.13 -3.31 9.70 22.27 0.22 -3.09 16 18 C -0.13 -3.10 10.05 22.27 0.22 -2.87 16 19 C -0.14 -3.69 10.05 22.27 0.22 -3.47 16 20 C -0.14 -4.87 10.05 22.27 0.22 -4.64 16 21 C -0.12 -4.46 9.31 22.27 0.21 -4.26 16 22 N -0.74 -32.69 3.93 -322.94 -1.27 -33.96 16 23 C -0.18 -9.62 8.36 84.04 0.70 -8.92 16 24 H 0.07 4.00 6.87 -2.91 -0.02 3.98 16 25 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 26 N -0.98 -63.14 13.97 21.65 0.30 -62.84 16 27 Si 0.93 47.81 27.74 68.60 1.90 49.72 16 28 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 29 H -0.31 -16.61 7.11 99.48 0.71 -15.90 16 30 H -0.26 -12.77 6.52 99.48 0.65 -12.12 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 2.01 6.47 -2.39 -0.02 1.99 16 34 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.16 2.62 7.70 -2.91 -0.02 2.60 16 36 H 0.41 10.39 7.60 -92.71 -0.70 9.69 16 37 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.03 1.52 7.75 -2.38 -0.02 1.50 16 39 H 0.05 1.98 7.11 -2.39 -0.02 1.96 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.05 1.91 7.05 -2.39 -0.02 1.89 16 42 H 0.10 2.28 8.09 -2.39 -0.02 2.26 16 43 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 44 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.11 3.66 8.06 -2.91 -0.02 3.64 16 47 H 0.10 4.40 7.36 -2.91 -0.02 4.38 16 48 H 0.36 16.37 5.89 -92.71 -0.55 15.82 16 49 H 0.25 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -80.12 402.07 1.90 -78.22 By element: Atomic # 1 Polarization: 44.51 SS G_CDS: -1.15 Total: 43.35 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.85 Total: -15.36 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -4.64 Total: -130.53 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.06 Total: -25.40 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.90 Total: 49.72 kcal Total: -80.12 1.90 -78.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278533657.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.712 kcal (2) G-P(sol) polarization free energy of solvation -80.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds