Wall clock time and date at job start Wed Apr 1 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36548 * 125.07521 * 2 1 4 4 C 1.34549 * 109.89810 * 180.02562 * 3 2 1 5 5 C 1.45986 * 107.00703 * 0.02562 * 4 3 2 6 6 C 1.37800 * 125.07540 * 180.02562 * 2 1 3 7 7 C 1.38984 * 133.36805 * 359.97438 * 6 2 1 8 8 C 1.38053 * 120.26384 * 179.97438 * 7 6 2 9 9 C 1.38277 * 120.88779 * 0.02562 * 8 7 6 10 10 C 1.39310 * 120.20018 * 359.97438 * 9 8 7 11 11 C 1.47376 * 120.34900 * 179.97438 * 10 9 8 12 12 O 1.21612 * 120.00455 * 214.62994 * 11 10 9 13 13 N 1.34780 * 119.99508 * 34.63034 * 11 10 9 14 14 C 1.47488 * 127.03381 * 5.28953 * 13 11 10 15 15 C 1.54007 * 107.08288 * 154.51693 * 14 13 11 16 16 C 1.54621 * 105.04378 * 1.30587 * 15 14 13 17 17 C 1.53001 * 110.73536 * 263.51132 * 16 15 14 18 18 C 1.53001 * 110.73797 * 140.18807 * 16 15 14 19 19 N 1.46500 * 109.46849 * 179.97438 * 18 16 15 20 20 C 1.36933 * 120.00194 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99584 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00437 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00046 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46760 * 90.00174 * 24 22 20 26 26 H 1.48490 * 109.47277 * 210.00343 * 24 22 20 27 27 H 1.48496 * 109.47265 * 330.00945 * 24 22 20 28 28 C 1.48118 * 127.03234 * 184.97010 * 13 11 10 29 29 H 1.08997 * 109.47108 * 269.99573 * 1 2 3 30 30 H 1.09007 * 109.46566 * 29.99590 * 1 2 3 31 31 H 1.09001 * 109.47158 * 149.99392 * 1 2 3 32 32 H 1.08000 * 125.05211 * 0.02562 * 3 2 1 33 33 H 1.08006 * 126.49178 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.86834 * 0.02562 * 7 6 2 35 35 H 1.08000 * 119.55694 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.89887 * 179.72414 * 9 8 7 37 37 H 1.09004 * 109.91131 * 273.87395 * 14 13 11 38 38 H 1.08994 * 109.91239 * 34.96492 * 14 13 11 39 39 H 1.08999 * 110.32474 * 120.19399 * 15 14 13 40 40 H 1.08993 * 110.32523 * 242.30810 * 15 14 13 41 41 H 1.09002 * 109.47304 * 60.00039 * 17 16 15 42 42 H 1.09004 * 109.46829 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47342 * 300.00069 * 17 16 15 44 44 H 1.08994 * 109.46965 * 299.99797 * 18 16 15 45 45 H 1.08998 * 109.46965 * 59.99618 * 18 16 15 46 46 H 0.97004 * 120.00007 * 359.97438 * 19 18 16 47 47 H 0.96998 * 119.99648 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.66406 * 337.77300 * 28 13 11 49 49 H 1.09006 * 110.66005 * 100.88603 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5483 0.7653 -0.0006 5 6 3.5949 -0.6939 -0.0016 6 6 2.2569 -1.1278 -0.0005 7 6 1.9785 -2.4894 -0.0007 8 6 3.0073 -3.4099 -0.0017 9 6 4.3275 -2.9989 -0.0022 10 6 4.6388 -1.6410 -0.0020 11 6 6.0448 -1.1993 -0.0019 12 8 6.3652 -0.1904 0.5967 13 7 6.9755 -1.9137 -0.6652 14 6 6.7463 -3.0900 -1.5249 15 6 7.9151 -3.1534 -2.5259 16 6 8.8280 -1.9625 -2.1528 17 6 8.5270 -0.7512 -3.0376 18 6 10.3026 -2.3574 -2.2555 19 7 11.1413 -1.2108 -1.8974 20 6 12.5055 -1.3275 -1.9175 21 1 12.9632 -2.2650 -2.1969 22 6 13.3001 -0.2412 -1.5777 23 7 14.6114 -0.3533 -1.5975 24 14 12.5085 1.3800 -1.0936 25 1 12.2831 1.4020 0.3741 26 1 13.4046 2.5014 -1.4737 27 1 11.2083 1.5253 -1.7962 28 6 8.4370 -1.6740 -0.6852 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.8826 2.1332 0.0004 33 1 4.3955 1.4351 -0.0003 34 1 0.9532 -2.8287 -0.0008 35 1 2.7779 -4.4653 -0.0014 36 1 5.1198 -3.7328 0.0015 37 1 6.7278 -3.9953 -0.9181 38 1 5.8022 -2.9814 -2.0586 39 1 8.4559 -4.0935 -2.4174 40 1 7.5464 -3.0449 -3.5458 41 1 7.4872 -0.4528 -2.9038 42 1 9.1813 0.0746 -2.7579 43 1 8.6985 -1.0124 -4.0818 44 1 10.5058 -3.1835 -1.5742 45 1 10.5259 -2.6656 -3.2769 46 1 10.7301 -0.3687 -1.6468 47 1 15.1666 0.4059 -1.3604 48 1 8.6607 -0.6395 -0.4247 49 1 8.9486 -2.3607 -0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278562357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:58 Heat of formation + Delta-G solvation = 55.486338 kcal Electronic energy + Delta-G solvation = -29720.484981 eV Core-core repulsion = 25841.811799 eV Total energy + Delta-G solvation = -3878.673182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63981 -40.12760 -38.07644 -36.96511 -34.93299 -33.14183 -32.72032 -31.03542 -30.49141 -29.39096 -29.23634 -26.81719 -26.49896 -25.85243 -23.97916 -22.85315 -21.94260 -21.57249 -21.13601 -19.19143 -18.95340 -17.73421 -17.19075 -17.02198 -16.30253 -15.79126 -15.71252 -15.55197 -15.23288 -14.54697 -14.42773 -14.21794 -13.81984 -13.73002 -13.50278 -13.40669 -13.10440 -13.05524 -12.94078 -12.68251 -12.49432 -12.38889 -12.15907 -11.79323 -11.71579 -11.68702 -11.62104 -11.45265 -11.28231 -10.83924 -10.52778 -10.43877 -10.28949 -10.04008 -9.89815 -9.69180 -9.51520 -8.85400 -8.58256 -8.46925 -7.88063 -7.18103 -5.72371 -3.07450 0.53706 1.29884 2.45604 2.46679 2.82819 3.02223 3.43932 3.47940 3.52049 3.72133 4.26970 4.32738 4.50418 4.53969 4.64736 4.65737 4.70494 4.71579 4.79201 4.94779 4.97092 5.02358 5.17737 5.26053 5.32260 5.34780 5.46045 5.51923 5.59576 5.64102 5.69027 5.75343 5.84023 5.87704 5.99736 6.01270 6.06563 6.14149 6.18098 6.22976 6.29351 6.41134 6.47103 6.53315 6.57410 6.68821 6.75233 6.88746 6.98561 7.62193 8.03557 8.24370 8.46751 9.25915 9.98625 10.18189 11.46014 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002666 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.633207 B =10501.350554 C =11468.019224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.490 5.490 3 C 0.049 3.951 4 C -0.188 4.188 5 C -0.062 4.062 6 C 0.088 3.912 7 C -0.109 4.109 8 C -0.108 4.108 9 C -0.114 4.114 10 C -0.077 4.077 11 C 0.576 3.424 12 O -0.531 6.531 13 N -0.615 5.615 14 C 0.101 3.899 15 C -0.123 4.123 16 C -0.083 4.083 17 C -0.131 4.131 18 C 0.174 3.826 19 N -0.755 5.755 20 C -0.242 4.242 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.935 5.935 24 Si 0.880 3.120 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.117 3.883 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.120 0.880 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.030 0.970 45 H 0.032 0.968 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.084 0.916 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.328 -5.572 0.658 33.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.175 5.175 3 C -0.076 4.076 4 C -0.212 4.212 5 C -0.067 4.067 6 C -0.017 4.017 7 C -0.130 4.130 8 C -0.127 4.127 9 C -0.133 4.133 10 C -0.080 4.080 11 C 0.365 3.635 12 O -0.408 6.408 13 N -0.348 5.348 14 C -0.022 4.022 15 C -0.162 4.162 16 C -0.085 4.085 17 C -0.188 4.188 18 C 0.046 3.954 19 N -0.401 5.401 20 C -0.372 4.372 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.583 5.583 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.005 4.005 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.188 0.812 33 H 0.170 0.830 34 H 0.138 0.862 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.050 0.950 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -33.356 -5.023 1.012 33.747 hybrid contribution -0.520 1.204 0.374 1.364 sum -33.875 -3.819 1.387 34.118 Atomic orbital electron populations 1.21923 0.77114 1.04153 1.02952 1.43754 1.05831 1.04243 1.63638 1.21906 0.90384 0.91114 1.04153 1.21844 0.96076 0.92993 1.10312 1.18939 0.90845 0.93515 1.03450 1.18138 0.89834 0.88413 1.05353 1.20109 0.99625 0.89080 1.04137 1.20698 0.91714 0.99110 1.01177 1.21286 0.97092 0.94198 1.00746 1.19272 0.91734 0.92967 1.04044 1.17797 0.84267 0.82578 0.78808 1.90803 1.81460 1.24376 1.44189 1.48718 1.07867 1.30543 1.47695 1.22256 0.99456 0.88138 0.92344 1.22585 0.95449 0.99177 0.98970 1.21851 0.96531 0.95577 0.94516 1.21721 1.00643 0.97406 0.99038 1.20605 0.85777 0.90791 0.98184 1.42769 1.03661 1.10044 1.83638 1.19037 0.80407 0.98956 1.38808 0.89203 1.24648 0.95124 0.97635 1.01654 1.69701 1.02551 1.30901 1.55110 0.86619 0.78520 0.85025 0.78796 1.20926 1.21731 1.20284 1.22540 0.78301 1.03089 0.96542 0.91318 0.89859 0.90194 0.81230 0.82956 0.86171 0.85127 0.84954 0.91429 0.90705 0.89961 0.90430 0.93382 0.91926 0.92347 0.95170 0.95046 0.80458 0.93105 0.89734 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.35 11.02 59.85 0.66 1.01 16 2 N -0.49 -4.33 3.17 -121.81 -0.39 -4.72 16 3 C 0.05 0.46 11.29 -16.76 -0.19 0.27 16 4 C -0.19 -2.39 10.47 -37.78 -0.40 -2.79 16 5 C -0.06 -0.83 6.11 -104.85 -0.64 -1.47 16 6 C 0.09 0.96 6.80 -83.99 -0.57 0.39 16 7 C -0.11 -0.94 9.93 -39.37 -0.39 -1.34 16 8 C -0.11 -0.90 9.99 -39.64 -0.40 -1.30 16 9 C -0.11 -1.18 8.17 -39.17 -0.32 -1.50 16 10 C -0.08 -1.04 5.50 -104.75 -0.58 -1.62 16 11 C 0.58 9.30 7.53 -12.54 -0.09 9.21 16 12 O -0.53 -10.54 16.31 5.27 0.09 -10.45 16 13 N -0.61 -8.82 3.19 -171.26 -0.55 -9.37 16 14 C 0.10 1.07 5.24 -2.98 -0.02 1.06 16 15 C -0.12 -1.38 6.09 -25.35 -0.15 -1.53 16 16 C -0.08 -1.27 0.65 -152.82 -0.10 -1.36 16 17 C -0.13 -2.06 8.31 37.16 0.31 -1.75 16 18 C 0.17 3.25 5.11 -4.04 -0.02 3.23 16 19 N -0.75 -17.93 4.96 -59.91 -0.30 -18.22 16 20 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 21 H 0.09 2.72 8.06 -52.48 -0.42 2.29 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.76 13.97 55.49 0.78 -28.98 16 24 Si 0.88 22.88 27.74 -169.99 -4.71 18.17 16 25 H -0.28 -7.38 7.11 56.52 0.40 -6.97 16 26 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 27 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 28 C 0.12 1.90 5.68 -2.32 -0.01 1.89 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.22 8.14 -51.92 -0.42 -0.21 16 31 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 32 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.15 2.08 7.77 -52.48 -0.41 1.67 16 34 H 0.12 0.71 8.05 -52.49 -0.42 0.28 16 35 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 1.16 5.70 -52.49 -0.30 0.86 16 37 H 0.07 0.59 7.03 -51.93 -0.36 0.22 16 38 H 0.07 0.72 7.17 -51.93 -0.37 0.34 16 39 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 40 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 41 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 42 H 0.06 1.14 6.69 -51.93 -0.35 0.80 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.03 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.36 8.59 4.07 -40.82 -0.17 8.43 16 47 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 48 H 0.08 1.59 7.71 -51.93 -0.40 1.19 16 49 H 0.08 1.27 8.01 -51.93 -0.42 0.86 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -36.54 391.14 -9.75 -46.29 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.40 Total: 5.99 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -3.16 Total: -4.60 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.46 Total: -61.29 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.54 -9.75 -46.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278562357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.780 kcal (2) G-P(sol) polarization free energy of solvation -36.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds