Wall clock time and date at job start Wed Apr 1 2020 00:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36548 * 125.07521 * 2 1 4 4 C 1.34549 * 109.89810 * 180.02562 * 3 2 1 5 5 C 1.45986 * 107.00703 * 0.02562 * 4 3 2 6 6 C 1.37800 * 125.07540 * 180.02562 * 2 1 3 7 7 C 1.38984 * 133.36805 * 359.97438 * 6 2 1 8 8 C 1.38053 * 120.26384 * 179.97438 * 7 6 2 9 9 C 1.38277 * 120.88779 * 0.02562 * 8 7 6 10 10 C 1.39310 * 120.20018 * 359.97438 * 9 8 7 11 11 C 1.47376 * 120.34900 * 179.97438 * 10 9 8 12 12 O 1.21612 * 120.00455 * 214.62994 * 11 10 9 13 13 N 1.34780 * 119.99508 * 34.63034 * 11 10 9 14 14 C 1.47488 * 127.03381 * 5.28953 * 13 11 10 15 15 C 1.54007 * 107.08288 * 154.51693 * 14 13 11 16 16 C 1.54621 * 105.04378 * 1.30587 * 15 14 13 17 17 C 1.53001 * 110.73536 * 263.51132 * 16 15 14 18 18 C 1.53001 * 110.73797 * 140.18807 * 16 15 14 19 19 N 1.46500 * 109.46849 * 179.97438 * 18 16 15 20 20 C 1.36933 * 120.00194 * 180.02562 * 19 18 16 21 21 H 1.08009 * 119.99584 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00437 * 180.02562 * 20 19 18 23 23 N 1.31620 * 120.00046 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99976 * 359.97438 * 22 20 19 25 25 H 1.48509 * 109.46760 * 90.00174 * 24 22 20 26 26 H 1.48490 * 109.47277 * 210.00343 * 24 22 20 27 27 H 1.48496 * 109.47265 * 330.00945 * 24 22 20 28 28 C 1.48118 * 127.03234 * 184.97010 * 13 11 10 29 29 H 1.08997 * 109.47108 * 269.99573 * 1 2 3 30 30 H 1.09007 * 109.46566 * 29.99590 * 1 2 3 31 31 H 1.09001 * 109.47158 * 149.99392 * 1 2 3 32 32 H 1.08000 * 125.05211 * 0.02562 * 3 2 1 33 33 H 1.08006 * 126.49178 * 180.02562 * 4 3 2 34 34 H 1.08000 * 119.86834 * 0.02562 * 7 6 2 35 35 H 1.08000 * 119.55694 * 179.97438 * 8 7 6 36 36 H 1.07996 * 119.89887 * 179.72414 * 9 8 7 37 37 H 1.09004 * 109.91131 * 273.87395 * 14 13 11 38 38 H 1.08994 * 109.91239 * 34.96492 * 14 13 11 39 39 H 1.08999 * 110.32474 * 120.19399 * 15 14 13 40 40 H 1.08993 * 110.32523 * 242.30810 * 15 14 13 41 41 H 1.09002 * 109.47304 * 60.00039 * 17 16 15 42 42 H 1.09004 * 109.46829 * 180.02562 * 17 16 15 43 43 H 1.08996 * 109.47342 * 300.00069 * 17 16 15 44 44 H 1.08994 * 109.46965 * 299.99797 * 18 16 15 45 45 H 1.08998 * 109.46965 * 59.99618 * 18 16 15 46 46 H 0.97004 * 120.00007 * 359.97438 * 19 18 16 47 47 H 0.96998 * 119.99648 * 179.97438 * 23 22 20 48 48 H 1.08997 * 110.66406 * 337.77300 * 28 13 11 49 49 H 1.09006 * 110.66005 * 100.88603 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2497 1.1175 0.0000 4 6 3.5483 0.7653 -0.0006 5 6 3.5949 -0.6939 -0.0016 6 6 2.2569 -1.1278 -0.0005 7 6 1.9785 -2.4894 -0.0007 8 6 3.0073 -3.4099 -0.0017 9 6 4.3275 -2.9989 -0.0022 10 6 4.6388 -1.6410 -0.0020 11 6 6.0448 -1.1993 -0.0019 12 8 6.3652 -0.1904 0.5967 13 7 6.9755 -1.9137 -0.6652 14 6 6.7463 -3.0900 -1.5249 15 6 7.9151 -3.1534 -2.5259 16 6 8.8280 -1.9625 -2.1528 17 6 8.5270 -0.7512 -3.0376 18 6 10.3026 -2.3574 -2.2555 19 7 11.1413 -1.2108 -1.8974 20 6 12.5055 -1.3275 -1.9175 21 1 12.9632 -2.2650 -2.1969 22 6 13.3001 -0.2412 -1.5777 23 7 14.6114 -0.3533 -1.5975 24 14 12.5085 1.3800 -1.0936 25 1 12.2831 1.4020 0.3741 26 1 13.4046 2.5014 -1.4737 27 1 11.2083 1.5253 -1.7962 28 6 8.4370 -1.6740 -0.6852 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 1.8826 2.1332 0.0004 33 1 4.3955 1.4351 -0.0003 34 1 0.9532 -2.8287 -0.0008 35 1 2.7779 -4.4653 -0.0014 36 1 5.1198 -3.7328 0.0015 37 1 6.7278 -3.9953 -0.9181 38 1 5.8022 -2.9814 -2.0586 39 1 8.4559 -4.0935 -2.4174 40 1 7.5464 -3.0449 -3.5458 41 1 7.4872 -0.4528 -2.9038 42 1 9.1813 0.0746 -2.7579 43 1 8.6985 -1.0124 -4.0818 44 1 10.5058 -3.1835 -1.5742 45 1 10.5259 -2.6656 -3.2769 46 1 10.7301 -0.3687 -1.6468 47 1 15.1666 0.4059 -1.3604 48 1 8.6607 -0.6395 -0.4247 49 1 8.9486 -2.3607 -0.0109 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278562357.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:57 Heat of formation + Delta-G solvation = 32.278283 kcal Electronic energy + Delta-G solvation = -29721.491358 eV Core-core repulsion = 25841.811799 eV Total energy + Delta-G solvation = -3879.679559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38514 -41.24561 -39.28187 -37.78507 -36.61842 -34.40901 -33.79344 -32.73796 -31.45426 -30.51922 -29.99977 -28.07341 -27.46647 -27.03245 -25.25975 -23.98774 -23.21703 -22.54520 -21.96169 -20.45028 -20.21907 -19.40684 -18.14554 -17.92121 -17.23288 -16.95737 -16.57203 -16.43858 -16.21126 -16.13344 -15.72329 -15.53634 -15.14883 -14.80328 -14.73126 -14.55009 -14.23066 -13.98613 -13.75544 -13.70055 -13.63789 -13.55112 -13.30034 -13.14183 -13.00268 -12.85897 -12.63395 -12.53683 -12.44833 -12.23855 -12.18322 -11.92648 -11.68903 -11.56409 -11.46654 -11.01839 -10.94185 -10.61861 -9.73363 -9.28151 -9.20336 -8.62421 -8.04470 -5.35189 -0.26626 0.58147 1.32758 1.35672 1.40387 1.57877 1.77934 1.90793 1.97181 2.44124 2.89193 3.26438 3.29245 3.58898 3.61213 3.78706 3.86874 3.89631 3.94832 3.95923 4.17073 4.23777 4.28271 4.30986 4.36137 4.47015 4.50760 4.58704 4.63487 4.69315 4.74297 4.76640 4.79665 4.88311 4.92107 4.96502 5.04772 5.05623 5.06418 5.10122 5.27336 5.30942 5.41918 5.43897 5.47103 5.68172 5.72925 5.76378 6.15843 6.20716 6.37721 6.51739 7.07025 7.08323 7.85029 8.01431 9.17199 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.018667 B = 0.002666 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.633207 B =10501.350554 C =11468.019224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.486 5.486 3 C 0.075 3.925 4 C -0.245 4.245 5 C -0.095 4.095 6 C 0.072 3.928 7 C -0.095 4.095 8 C -0.107 4.107 9 C -0.103 4.103 10 C -0.114 4.114 11 C 0.569 3.431 12 O -0.588 6.588 13 N -0.612 5.612 14 C 0.099 3.901 15 C -0.113 4.113 16 C -0.076 4.076 17 C -0.126 4.126 18 C 0.171 3.829 19 N -0.760 5.760 20 C -0.223 4.223 21 H 0.066 0.934 22 C -0.059 4.059 23 N -0.980 5.980 24 Si 0.939 3.061 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.261 1.261 28 C 0.116 3.884 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.205 0.795 33 H 0.122 0.878 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.039 0.961 46 H 0.362 0.638 47 H 0.257 0.743 48 H 0.046 0.954 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.236 -7.894 -0.125 39.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.169 5.169 3 C -0.052 4.052 4 C -0.270 4.270 5 C -0.100 4.100 6 C -0.034 4.034 7 C -0.115 4.115 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.117 4.117 11 C 0.361 3.639 12 O -0.470 6.470 13 N -0.344 5.344 14 C -0.022 4.022 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.183 4.183 18 C 0.045 3.955 19 N -0.406 5.406 20 C -0.354 4.354 21 H 0.084 0.916 22 C -0.250 4.250 23 N -0.632 5.632 24 Si 0.768 3.232 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.187 1.187 28 C -0.007 4.007 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.222 0.778 33 H 0.140 0.860 34 H 0.174 0.826 35 H 0.188 0.812 36 H 0.166 0.834 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.195 0.805 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -38.343 -7.414 0.193 39.054 hybrid contribution 0.892 1.832 0.610 2.127 sum -37.451 -5.582 0.803 37.873 Atomic orbital electron populations 1.22287 0.74088 1.06094 1.04326 1.44085 1.07502 1.03327 1.62012 1.22317 0.89358 0.92758 1.00768 1.21776 0.97022 0.93309 1.14894 1.19273 0.92503 0.93777 1.04492 1.18438 0.89013 0.89899 1.06054 1.20602 1.01608 0.87917 1.01371 1.21145 0.90501 1.01023 0.99929 1.21536 0.98804 0.92808 0.99069 1.19203 0.89825 0.94658 1.08051 1.18424 0.85673 0.81882 0.77959 1.90753 1.82505 1.26974 1.46748 1.48758 1.06578 1.31375 1.47698 1.22543 0.99946 0.87529 0.92177 1.22606 0.94608 0.97723 1.00176 1.21717 0.95032 0.97273 0.93712 1.21666 1.00054 0.96647 0.99941 1.20817 0.87201 0.89196 0.98326 1.42866 1.02447 1.11705 1.83555 1.19076 0.82465 0.97640 1.36251 0.91561 1.25321 0.95583 1.01047 1.03077 1.69845 1.04006 1.31828 1.57481 0.85651 0.78194 0.81105 0.78270 1.21169 1.21800 1.18652 1.22383 0.80108 1.00822 0.97367 0.90141 0.87823 0.88517 0.77840 0.85972 0.82562 0.81243 0.83432 0.88529 0.89012 0.87998 0.88454 0.93024 0.95084 0.90822 0.94493 0.94311 0.80501 0.93399 0.93510 0.90417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 11.02 127.77 1.41 1.75 16 2 N -0.49 -7.43 3.17 -539.30 -1.71 -9.14 16 3 C 0.07 1.35 11.29 83.11 0.94 2.29 16 4 C -0.25 -6.74 10.47 23.43 0.25 -6.50 16 5 C -0.09 -2.60 6.11 -20.01 -0.12 -2.73 16 6 C 0.07 1.42 6.80 38.97 0.27 1.68 16 7 C -0.09 -1.25 9.93 22.40 0.22 -1.03 16 8 C -0.11 -1.33 9.99 22.23 0.22 -1.11 16 9 C -0.10 -1.87 8.17 22.54 0.18 -1.69 16 10 C -0.11 -3.10 5.50 -19.95 -0.11 -3.21 16 11 C 0.57 19.32 7.53 86.65 0.65 19.97 16 12 O -0.59 -25.62 16.31 -4.07 -0.07 -25.68 16 13 N -0.61 -17.57 3.19 -813.99 -2.60 -20.17 16 14 C 0.10 1.83 5.24 86.53 0.45 2.28 16 15 C -0.11 -2.16 6.09 31.49 0.19 -1.97 16 16 C -0.08 -2.24 0.65 -51.09 -0.03 -2.27 16 17 C -0.13 -3.93 8.31 71.98 0.60 -3.33 16 18 C 0.17 6.25 5.11 86.38 0.44 6.69 16 19 N -0.76 -36.46 4.96 -343.46 -1.70 -38.16 16 20 C -0.22 -12.95 10.47 84.03 0.88 -12.07 16 21 H 0.07 4.11 8.06 -2.91 -0.02 4.09 16 22 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 23 N -0.98 -64.29 13.97 21.65 0.30 -63.99 16 24 Si 0.94 48.80 27.74 68.60 1.90 50.70 16 25 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 26 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.26 -12.74 6.52 99.48 0.65 -12.09 16 28 C 0.12 3.86 5.68 86.61 0.49 4.35 16 29 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 31 H 0.10 0.17 8.09 -2.39 -0.02 0.15 16 32 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 33 H 0.12 3.92 7.77 -2.91 -0.02 3.90 16 34 H 0.16 0.91 8.05 -2.91 -0.02 0.89 16 35 H 0.17 0.80 8.06 -2.91 -0.02 0.78 16 36 H 0.15 2.08 5.70 -2.91 -0.02 2.07 16 37 H 0.10 1.27 7.03 -2.38 -0.02 1.25 16 38 H 0.09 1.44 7.17 -2.39 -0.02 1.42 16 39 H 0.10 1.62 7.85 -2.39 -0.02 1.60 16 40 H 0.10 1.55 7.87 -2.39 -0.02 1.53 16 41 H 0.05 1.56 8.07 -2.39 -0.02 1.54 16 42 H 0.03 1.14 6.69 -2.38 -0.02 1.13 16 43 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.04 1.33 8.10 -2.39 -0.02 1.31 16 45 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.36 17.47 4.07 -92.71 -0.38 17.10 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 48 H 0.05 1.89 7.71 -2.39 -0.02 1.87 16 49 H 0.08 2.55 8.01 -2.38 -0.02 2.53 16 Total: -1.00 -86.87 391.14 4.04 -82.83 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.52 Total: 23.62 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 7.40 Total: -0.01 kcal Atomic # 7 Polarization: -125.74 SS G_CDS: -5.71 Total: -131.45 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.07 Total: -25.68 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.90 Total: 50.70 kcal Total: -86.87 4.04 -82.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278562357.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.110 kcal (2) G-P(sol) polarization free energy of solvation -86.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds