Wall clock time and date at job start Wed Apr 1 2020 00:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35742 * 120.33173 * 2 1 4 4 C 1.40826 * 119.71963 * 180.02562 * 3 2 1 5 5 C 1.34533 * 120.58155 * 0.02562 * 4 3 2 6 6 N 1.37435 * 120.74438 * 359.97438 * 5 4 3 7 7 C 1.35129 * 131.28355 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.77226 * 179.97438 * 7 6 5 9 9 C 1.47491 * 126.37376 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99939 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00369 * 0.02562 * 9 8 7 12 12 C 1.47023 * 125.64486 * 359.97438 * 11 9 8 13 13 C 1.54326 * 107.26988 * 178.97261 * 12 11 9 14 14 C 1.55157 * 102.94250 * 337.80823 * 13 12 11 15 15 H 1.09002 * 110.99782 * 277.38605 * 14 13 12 16 16 C 1.52993 * 111.00259 * 153.57833 * 14 13 12 17 17 H 1.08999 * 109.47163 * 303.17825 * 16 14 13 18 18 C 1.52997 * 109.47602 * 63.17973 * 16 14 13 19 19 N 1.46506 * 109.47100 * 183.17725 * 16 14 13 20 20 C 1.36939 * 120.00073 * 154.72214 * 19 16 14 21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 16 22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 16 23 23 N 1.31622 * 120.00455 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46991 * 59.99625 * 24 22 20 26 26 H 1.48497 * 109.47469 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46948 * 299.99895 * 24 22 20 28 28 C 1.47467 * 125.63183 * 179.97438 * 11 9 8 29 29 C 1.41199 * 107.25131 * 0.22425 * 8 7 6 30 30 C 1.37944 * 119.81291 * 359.97438 * 6 5 4 31 31 H 1.09001 * 109.46782 * 269.97816 * 1 2 3 32 32 H 1.09000 * 109.47467 * 29.97746 * 1 2 3 33 33 H 1.08996 * 109.46934 * 149.97818 * 1 2 3 34 34 H 1.08002 * 120.14326 * 0.04644 * 3 2 1 35 35 H 1.08001 * 119.71059 * 179.97438 * 4 3 2 36 36 H 1.08004 * 119.62585 * 180.02562 * 5 4 3 37 37 H 1.07998 * 125.61334 * 0.02635 * 7 6 5 38 38 H 1.09001 * 109.88438 * 59.55502 * 12 11 9 39 39 H 1.08994 * 110.01324 * 298.46268 * 12 11 9 40 40 H 1.09000 * 110.71955 * 219.44173 * 13 12 11 41 41 H 1.09003 * 110.87027 * 96.24246 * 13 12 11 42 42 H 1.09002 * 109.46832 * 299.99981 * 18 16 14 43 43 H 1.09001 * 109.47659 * 59.99432 * 18 16 14 44 44 H 1.08995 * 109.47574 * 180.02562 * 18 16 14 45 45 H 0.97005 * 119.99811 * 335.00008 * 19 16 14 46 46 H 0.97000 * 120.00679 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.34510 * 85.25547 * 28 11 9 48 48 H 1.08999 * 110.40323 * 322.91764 * 28 11 9 49 49 H 1.08007 * 126.56639 * 179.75548 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1566 -0.0005 5 6 4.2728 -0.0089 -0.0016 6 7 3.6005 -1.2076 -0.0016 7 6 4.0500 -2.4819 -0.0021 8 6 2.9650 -3.3357 -0.0013 9 6 3.0121 -4.8099 -0.0020 10 8 1.9789 -5.4512 -0.0016 11 7 4.2001 -5.4463 -0.0030 12 6 5.5195 -4.7976 -0.0041 13 6 6.5808 -5.9178 0.0214 14 6 5.7992 -7.1237 0.6065 15 1 5.7652 -7.0761 1.6949 16 6 6.4035 -8.4485 0.1371 17 1 6.4152 -8.4768 -0.9525 18 6 7.8339 -8.5725 0.6658 19 7 5.5968 -9.5606 0.6458 20 6 5.5912 -10.7605 -0.0142 21 1 6.1818 -10.8871 -0.9095 22 6 4.8264 -11.8139 0.4675 23 7 4.1070 -11.6599 1.5589 24 14 4.8193 -13.4509 -0.4323 25 1 6.1988 -13.9988 -0.4742 26 1 3.9303 -14.4035 0.2800 27 1 4.3234 -13.2519 -1.8179 28 6 4.3915 -6.9085 -0.0032 29 6 1.8020 -2.5351 -0.0056 30 6 2.2211 -1.2203 0.0000 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1114 0.0008 35 1 4.1460 2.0888 -0.0010 36 1 5.3528 -0.0024 -0.0016 37 1 5.0872 -2.7829 -0.0021 38 1 5.6238 -4.1680 0.8796 39 1 5.6382 -4.1950 -0.9045 40 1 7.4130 -5.6458 0.6707 41 1 6.9354 -6.1397 -0.9852 42 1 8.4341 -7.7451 0.2873 43 1 7.8223 -8.5443 1.7554 44 1 8.2645 -9.5162 0.3310 45 1 5.0635 -9.4458 1.4479 46 1 3.5723 -12.3959 1.8954 47 1 4.3560 -7.2951 -1.0217 48 1 3.6332 -7.3910 0.6134 49 1 0.7801 -2.8847 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279039314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:46 Heat of formation + Delta-G solvation = 56.677276 kcal Electronic energy + Delta-G solvation = -29063.543526 eV Core-core repulsion = 25184.921988 eV Total energy + Delta-G solvation = -3878.621539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.50016 -39.81228 -37.71177 -36.82063 -35.16495 -34.38301 -32.49283 -30.93359 -30.30035 -29.33205 -28.32972 -27.83885 -27.22154 -24.62334 -23.90691 -22.76243 -22.23301 -21.39027 -21.16517 -19.62337 -19.20871 -17.60474 -17.40677 -16.96732 -16.28987 -15.95080 -15.65961 -15.49952 -14.84778 -14.64920 -14.52699 -14.16014 -13.81994 -13.67987 -13.58481 -13.56981 -13.10291 -13.01221 -12.69418 -12.61924 -12.42244 -12.08163 -12.02440 -11.98641 -11.82428 -11.41782 -11.38873 -11.32361 -10.84113 -10.74685 -10.57009 -10.49550 -10.39807 -10.20061 -9.90310 -9.74474 -9.57873 -8.86759 -8.78960 -8.41296 -7.60809 -6.92075 -5.71069 -3.00272 0.45260 1.07305 2.01979 2.38964 3.15350 3.17429 3.47840 3.52292 3.53420 3.59625 4.12926 4.33044 4.45285 4.52732 4.61860 4.64503 4.66962 4.82235 4.88470 4.97048 5.13483 5.15782 5.24878 5.26914 5.32615 5.43507 5.53523 5.59300 5.62853 5.66677 5.70593 5.79962 5.89765 5.91051 5.96057 6.05467 6.06988 6.08966 6.19916 6.37804 6.42353 6.43278 6.52382 6.59293 6.63216 6.67601 6.87934 6.97680 7.09764 7.71858 7.73905 8.40597 8.46845 9.58068 10.15009 10.49388 11.51324 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002201 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.177054 B =12716.062666 C =13779.428976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.146 4.146 4 C -0.130 4.130 5 C 0.032 3.968 6 N -0.338 5.338 7 C -0.024 4.024 8 C -0.159 4.159 9 C 0.596 3.404 10 O -0.534 6.534 11 N -0.614 5.614 12 C 0.094 3.906 13 C -0.125 4.125 14 C -0.102 4.102 15 H 0.081 0.919 16 C 0.185 3.815 17 H 0.049 0.951 18 C -0.163 4.163 19 N -0.724 5.724 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.121 3.879 29 C -0.132 4.132 30 C 0.024 3.976 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.161 0.839 37 H 0.188 0.812 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.045 30.367 -2.990 30.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.037 4.037 3 C -0.166 4.166 4 C -0.150 4.150 5 C -0.086 4.086 6 N -0.001 5.001 7 C -0.157 4.157 8 C -0.167 4.167 9 C 0.385 3.615 10 O -0.412 6.412 11 N -0.347 5.347 12 C -0.029 4.029 13 C -0.164 4.164 14 C -0.122 4.122 15 H 0.099 0.901 16 C 0.074 3.926 17 H 0.067 0.933 18 C -0.224 4.224 19 N -0.365 5.365 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.213 1.213 28 C 0.000 4.000 29 C -0.156 4.156 30 C -0.080 4.080 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.205 0.795 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.619 30.052 -3.105 30.255 hybrid contribution 0.090 -0.835 -0.135 0.851 sum 1.709 29.217 -3.240 29.446 Atomic orbital electron populations 1.20754 0.89593 1.03512 1.03048 1.19392 0.96513 0.90109 0.97694 1.20795 0.93678 0.97836 1.04333 1.20682 0.94823 0.97028 1.02455 1.21633 0.98361 0.83195 1.05405 1.41333 1.07161 1.05412 1.46223 1.22984 1.00273 0.80370 1.12037 1.19649 0.93319 0.92628 1.11094 1.17041 0.82295 0.85583 0.76596 1.90811 1.32434 1.67413 1.50528 1.48406 1.04821 1.08461 1.73059 1.22322 0.83374 0.96497 1.00691 1.22707 0.96912 0.94344 1.02410 1.22674 0.93668 0.95347 1.00488 0.90053 1.20149 0.90041 0.85677 0.96697 0.93320 1.22440 0.98758 1.00284 1.00886 1.42413 1.53591 1.08791 1.31737 1.19147 1.22576 0.88973 1.06281 0.91302 1.24731 0.99916 0.98291 0.97920 1.69646 1.32983 1.31986 1.23318 0.86299 0.77172 0.83979 0.78907 1.21389 1.21760 1.21291 1.22276 0.97759 0.78085 1.01871 1.21089 0.98807 0.88756 1.06995 1.18643 0.81900 0.94910 1.12538 0.90375 0.90886 0.90679 0.84996 0.83766 0.82182 0.79522 0.91407 0.91436 0.90057 0.90253 0.94437 0.93524 0.92795 0.78234 0.93470 0.91024 0.89651 0.82764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 9.91 36.01 0.36 -0.39 16 2 C -0.04 -0.32 5.91 -104.32 -0.62 -0.94 16 3 C -0.15 -1.04 9.72 -39.50 -0.38 -1.42 16 4 C -0.13 -0.81 9.97 -39.91 -0.40 -1.20 16 5 C 0.03 0.23 10.89 -16.35 -0.18 0.05 16 6 N -0.34 -3.49 2.92 -60.42 -0.18 -3.67 16 7 C -0.02 -0.26 10.09 -16.16 -0.16 -0.42 16 8 C -0.16 -2.25 6.10 -105.07 -0.64 -2.89 16 9 C 0.60 10.25 7.85 -12.49 -0.10 10.15 16 10 O -0.53 -11.42 17.17 5.28 0.09 -11.33 16 11 N -0.61 -9.41 3.33 -171.73 -0.57 -9.98 16 12 C 0.09 1.01 4.99 -3.06 -0.02 1.00 16 13 C -0.13 -1.39 5.44 -24.90 -0.14 -1.53 16 14 C -0.10 -1.58 2.63 -88.47 -0.23 -1.81 16 15 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 16 C 0.18 3.45 2.40 -67.93 -0.16 3.29 16 17 H 0.05 0.93 8.07 -51.93 -0.42 0.52 16 18 C -0.16 -2.76 9.31 37.16 0.35 -2.41 16 19 N -0.72 -17.70 4.90 -53.43 -0.26 -17.97 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 21 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 24 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 C 0.12 2.14 6.16 -2.51 -0.02 2.13 16 29 C -0.13 -1.76 10.27 -38.55 -0.40 -2.16 16 30 C 0.02 0.28 6.60 -84.01 -0.55 -0.28 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.53 7.69 -51.93 -0.40 0.13 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 36 H 0.16 0.63 8.06 -52.48 -0.42 0.21 16 37 H 0.19 1.51 4.34 -52.49 -0.23 1.28 16 38 H 0.07 0.62 6.84 -51.93 -0.36 0.26 16 39 H 0.07 0.60 7.00 -51.93 -0.36 0.24 16 40 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 42 H 0.04 0.50 7.38 -51.93 -0.38 0.12 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 46 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 47 H 0.07 1.34 8.03 -51.93 -0.42 0.92 16 48 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 49 H 0.15 1.98 7.93 -52.48 -0.42 1.57 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -35.17 396.15 -10.26 -45.43 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -7.48 Total: 7.62 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.53 Total: -6.00 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.28 Total: -59.33 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.17 -10.26 -45.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279039314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.106 kcal (2) G-P(sol) polarization free energy of solvation -35.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds