Wall clock time and date at job start Wed Apr 1 2020 00:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35742 * 120.33173 * 2 1 4 4 C 1.40826 * 119.71963 * 180.02562 * 3 2 1 5 5 C 1.34533 * 120.58155 * 0.02562 * 4 3 2 6 6 N 1.37435 * 120.74438 * 359.97438 * 5 4 3 7 7 C 1.35129 * 131.28355 * 180.02562 * 6 5 4 8 8 C 1.38062 * 108.77226 * 179.97438 * 7 6 5 9 9 C 1.47491 * 126.37376 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99939 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00369 * 0.02562 * 9 8 7 12 12 C 1.47023 * 125.64486 * 359.97438 * 11 9 8 13 13 C 1.54326 * 107.26988 * 178.97261 * 12 11 9 14 14 C 1.55157 * 102.94250 * 337.80823 * 13 12 11 15 15 H 1.09002 * 110.99782 * 277.38605 * 14 13 12 16 16 C 1.52993 * 111.00259 * 153.57833 * 14 13 12 17 17 H 1.08999 * 109.47163 * 303.17825 * 16 14 13 18 18 C 1.52997 * 109.47602 * 63.17973 * 16 14 13 19 19 N 1.46506 * 109.47100 * 183.17725 * 16 14 13 20 20 C 1.36939 * 120.00073 * 154.72214 * 19 16 14 21 21 H 1.08004 * 119.99859 * 0.02562 * 20 19 16 22 22 C 1.38805 * 119.99849 * 180.02562 * 20 19 16 23 23 N 1.31622 * 120.00455 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00168 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46991 * 59.99625 * 24 22 20 26 26 H 1.48497 * 109.47469 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46948 * 299.99895 * 24 22 20 28 28 C 1.47467 * 125.63183 * 179.97438 * 11 9 8 29 29 C 1.41199 * 107.25131 * 0.22425 * 8 7 6 30 30 C 1.37944 * 119.81291 * 359.97438 * 6 5 4 31 31 H 1.09001 * 109.46782 * 269.97816 * 1 2 3 32 32 H 1.09000 * 109.47467 * 29.97746 * 1 2 3 33 33 H 1.08996 * 109.46934 * 149.97818 * 1 2 3 34 34 H 1.08002 * 120.14326 * 0.04644 * 3 2 1 35 35 H 1.08001 * 119.71059 * 179.97438 * 4 3 2 36 36 H 1.08004 * 119.62585 * 180.02562 * 5 4 3 37 37 H 1.07998 * 125.61334 * 0.02635 * 7 6 5 38 38 H 1.09001 * 109.88438 * 59.55502 * 12 11 9 39 39 H 1.08994 * 110.01324 * 298.46268 * 12 11 9 40 40 H 1.09000 * 110.71955 * 219.44173 * 13 12 11 41 41 H 1.09003 * 110.87027 * 96.24246 * 13 12 11 42 42 H 1.09002 * 109.46832 * 299.99981 * 18 16 14 43 43 H 1.09001 * 109.47659 * 59.99432 * 18 16 14 44 44 H 1.08995 * 109.47574 * 180.02562 * 18 16 14 45 45 H 0.97005 * 119.99811 * 335.00008 * 19 16 14 46 46 H 0.97000 * 120.00679 * 179.97438 * 23 22 20 47 47 H 1.08998 * 110.34510 * 85.25547 * 28 11 9 48 48 H 1.08999 * 110.40323 * 322.91764 * 28 11 9 49 49 H 1.08007 * 126.56639 * 179.75548 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6007 1.1566 -0.0005 5 6 4.2728 -0.0089 -0.0016 6 7 3.6005 -1.2076 -0.0016 7 6 4.0500 -2.4819 -0.0021 8 6 2.9650 -3.3357 -0.0013 9 6 3.0121 -4.8099 -0.0020 10 8 1.9789 -5.4512 -0.0016 11 7 4.2001 -5.4463 -0.0030 12 6 5.5195 -4.7976 -0.0041 13 6 6.5808 -5.9178 0.0214 14 6 5.7992 -7.1237 0.6065 15 1 5.7652 -7.0761 1.6949 16 6 6.4035 -8.4485 0.1371 17 1 6.4152 -8.4768 -0.9525 18 6 7.8339 -8.5725 0.6658 19 7 5.5968 -9.5606 0.6458 20 6 5.5912 -10.7605 -0.0142 21 1 6.1818 -10.8871 -0.9095 22 6 4.8264 -11.8139 0.4675 23 7 4.1070 -11.6599 1.5589 24 14 4.8193 -13.4509 -0.4323 25 1 6.1988 -13.9988 -0.4742 26 1 3.9303 -14.4035 0.2800 27 1 4.3234 -13.2519 -1.8179 28 6 4.3915 -6.9085 -0.0032 29 6 1.8020 -2.5351 -0.0056 30 6 2.2211 -1.2203 0.0000 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1114 0.0008 35 1 4.1460 2.0888 -0.0010 36 1 5.3528 -0.0024 -0.0016 37 1 5.0872 -2.7829 -0.0021 38 1 5.6238 -4.1680 0.8796 39 1 5.6382 -4.1950 -0.9045 40 1 7.4130 -5.6458 0.6707 41 1 6.9354 -6.1397 -0.9852 42 1 8.4341 -7.7451 0.2873 43 1 7.8223 -8.5443 1.7554 44 1 8.2645 -9.5162 0.3310 45 1 5.0635 -9.4458 1.4479 46 1 3.5723 -12.3959 1.8954 47 1 4.3560 -7.2951 -1.0217 48 1 3.6332 -7.3910 0.6134 49 1 0.7801 -2.8847 -0.0099 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279039314.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:45 Heat of formation + Delta-G solvation = 35.058661 kcal Electronic energy + Delta-G solvation = -29064.480980 eV Core-core repulsion = 25184.921988 eV Total energy + Delta-G solvation = -3879.558992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.27456 -41.03539 -39.02360 -37.58077 -36.79166 -35.04039 -34.30785 -32.24210 -31.35248 -30.32129 -29.88540 -28.91687 -27.80200 -25.99091 -25.59377 -23.59416 -23.20934 -22.58853 -21.99996 -21.06559 -20.31047 -19.13430 -18.33219 -18.22566 -17.40300 -16.75387 -16.69188 -16.63700 -16.29005 -15.85175 -15.47104 -15.41967 -15.22359 -14.94830 -14.55604 -14.33155 -14.20934 -14.12518 -13.96926 -13.72396 -13.53374 -13.36932 -13.22509 -13.11200 -12.77125 -12.60819 -12.46931 -12.36943 -12.29362 -12.23674 -12.06464 -11.99759 -11.69837 -11.52159 -11.35767 -11.14065 -11.11880 -10.91072 -9.80035 -9.51636 -8.97490 -8.31702 -7.91227 -5.18815 -0.20688 0.36053 1.04114 1.45686 1.49179 1.54753 1.64102 2.01503 2.41144 2.54440 2.57415 3.38076 3.43272 3.53422 3.64090 3.73858 3.87784 3.90290 3.97057 4.08607 4.12851 4.19111 4.27930 4.38614 4.42437 4.47699 4.58395 4.65939 4.66991 4.74104 4.76452 4.82602 4.87039 4.88669 4.92300 4.98728 5.12537 5.13031 5.15155 5.22798 5.25308 5.31811 5.41357 5.44009 5.47275 5.54618 5.62396 5.68165 5.88230 6.30528 6.30826 6.51490 7.11961 7.36300 8.15049 8.35518 9.32332 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002201 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.177054 B =12716.062666 C =13779.428976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.071 4.071 3 C -0.128 4.128 4 C -0.127 4.127 5 C 0.022 3.978 6 N -0.339 5.339 7 C -0.007 4.007 8 C -0.192 4.192 9 C 0.587 3.413 10 O -0.600 6.600 11 N -0.612 5.612 12 C 0.087 3.913 13 C -0.111 4.111 14 C -0.092 4.092 15 H 0.075 0.925 16 C 0.178 3.822 17 H 0.046 0.954 18 C -0.152 4.152 19 N -0.739 5.739 20 C -0.231 4.231 21 H 0.077 0.923 22 C -0.082 4.082 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.275 1.275 26 H -0.300 1.300 27 H -0.281 1.281 28 C 0.125 3.875 29 C -0.174 4.174 30 C 0.025 3.975 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.058 0.942 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.201 0.799 37 H 0.222 0.778 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.032 0.968 45 H 0.369 0.631 46 H 0.248 0.752 47 H 0.054 0.946 48 H 0.035 0.965 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 34.980 -3.937 35.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.072 4.072 3 C -0.148 4.148 4 C -0.146 4.146 5 C -0.095 4.095 6 N -0.002 5.002 7 C -0.140 4.140 8 C -0.199 4.199 9 C 0.379 3.621 10 O -0.482 6.482 11 N -0.343 5.343 12 C -0.034 4.034 13 C -0.149 4.149 14 C -0.112 4.112 15 H 0.094 0.906 16 C 0.070 3.930 17 H 0.064 0.936 18 C -0.211 4.211 19 N -0.379 5.379 20 C -0.363 4.363 21 H 0.095 0.905 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.799 3.201 25 H -0.201 1.201 26 H -0.226 1.226 27 H -0.207 1.207 28 C 0.002 3.998 29 C -0.198 4.198 30 C -0.080 4.080 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.077 0.923 34 H 0.178 0.822 35 H 0.202 0.798 36 H 0.217 0.783 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.136 0.864 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.200 0.800 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.627 34.727 -4.087 35.417 hybrid contribution -1.095 -1.997 0.121 2.281 sum 4.532 32.730 -3.966 33.279 Atomic orbital electron populations 1.20763 0.88848 1.03811 1.03294 1.19661 0.97449 0.89957 1.00142 1.21303 0.94637 0.98082 1.00821 1.21264 0.94529 0.98378 1.00417 1.22458 1.00324 0.82002 1.04721 1.41572 1.06811 1.06329 1.45457 1.23202 1.00445 0.80061 1.10277 1.19403 0.95187 0.90824 1.14497 1.17660 0.81901 0.87041 0.75541 1.90754 1.34754 1.68990 1.53721 1.48450 1.06375 1.07481 1.72036 1.22717 0.80325 0.96798 1.03537 1.22758 0.97225 0.91372 1.03528 1.22492 0.92737 0.95907 1.00081 0.90631 1.20440 0.90778 0.85314 0.96481 0.93569 1.22260 0.97183 1.01135 1.00541 1.42676 1.54326 1.09692 1.31184 1.19571 1.20942 0.89878 1.05884 0.90488 1.25545 1.00699 1.01953 0.99182 1.69823 1.34654 1.32546 1.25354 0.85269 0.77364 0.79881 0.77634 1.20074 1.22643 1.20734 1.22012 0.98070 0.79807 0.99931 1.21044 0.98281 0.90339 1.10185 1.18830 0.83045 0.94784 1.11349 0.90194 0.88695 0.92262 0.82164 0.79794 0.78253 0.76225 0.88666 0.88300 0.86404 0.88949 0.89733 0.94000 0.94839 0.79969 0.94345 0.92795 0.94638 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.91 71.24 0.71 -0.75 16 2 C -0.07 -1.18 5.91 -19.67 -0.12 -1.29 16 3 C -0.13 -1.32 9.72 22.32 0.22 -1.10 16 4 C -0.13 -0.89 9.97 22.05 0.22 -0.67 16 5 C 0.02 0.20 10.89 82.97 0.90 1.11 16 6 N -0.34 -6.09 2.92 -345.07 -1.01 -7.10 16 7 C -0.01 -0.13 10.09 84.14 0.85 0.72 16 8 C -0.19 -5.63 6.10 -20.15 -0.12 -5.76 16 9 C 0.59 21.78 7.85 86.68 0.68 22.46 16 10 O -0.60 -28.77 17.17 -4.03 -0.07 -28.84 16 11 N -0.61 -19.20 3.33 -815.48 -2.71 -21.92 16 12 C 0.09 1.58 4.99 86.73 0.43 2.01 16 13 C -0.11 -2.01 5.44 31.78 0.17 -1.83 16 14 C -0.09 -2.81 2.63 -9.40 -0.02 -2.84 16 15 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 16 C 0.18 6.59 2.40 44.99 0.11 6.69 16 17 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 18 C -0.15 -4.77 9.31 71.98 0.67 -4.10 16 19 N -0.74 -37.40 4.90 -322.95 -1.58 -38.98 16 20 C -0.23 -12.97 9.93 84.03 0.83 -12.14 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 23 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 24 Si 0.97 47.89 29.55 68.60 2.03 49.91 16 25 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 28 C 0.12 4.68 6.16 86.85 0.54 5.22 16 29 C -0.17 -5.08 10.27 22.94 0.24 -4.85 16 30 C 0.03 0.57 6.60 38.90 0.26 0.83 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 0.77 8.09 -2.39 -0.02 0.75 16 33 H 0.06 0.94 7.69 -2.39 -0.02 0.93 16 34 H 0.16 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.18 -0.13 8.06 -2.91 -0.02 -0.15 16 36 H 0.20 0.23 8.06 -2.91 -0.02 0.21 16 37 H 0.22 2.50 4.34 -2.91 -0.01 2.49 16 38 H 0.10 1.28 6.84 -2.39 -0.02 1.27 16 39 H 0.10 1.27 7.00 -2.39 -0.02 1.25 16 40 H 0.12 1.40 8.12 -2.39 -0.02 1.38 16 41 H 0.09 1.51 8.04 -2.39 -0.02 1.49 16 42 H 0.08 1.87 7.38 -2.39 -0.02 1.86 16 43 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.37 20.63 7.80 -92.70 -0.72 19.90 16 46 H 0.25 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.05 2.17 8.03 -2.39 -0.02 2.15 16 48 H 0.03 1.65 8.04 -2.39 -0.02 1.63 16 49 H 0.14 4.17 7.93 -2.91 -0.02 4.15 16 Total: -1.00 -86.65 396.15 4.20 -82.45 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.24 Total: 27.09 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 7.02 Total: -0.68 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -5.02 Total: -129.93 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.07 Total: -28.84 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.91 kcal Total: -86.65 4.20 -82.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279039314.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.504 kcal (2) G-P(sol) polarization free energy of solvation -86.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds