Wall clock time and date at job start Wed Apr 1 2020 00:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35743 * 120.33427 * 2 1 4 4 C 1.40831 * 119.71958 * 180.02562 * 3 2 1 5 5 C 1.34529 * 120.58144 * 359.97438 * 4 3 2 6 6 N 1.37437 * 120.74911 * 0.02562 * 5 4 3 7 7 C 1.35123 * 131.28765 * 179.97438 * 6 5 4 8 8 C 1.38056 * 108.77377 * 179.97438 * 7 6 5 9 9 C 1.47500 * 126.37800 * 179.97438 * 8 7 6 10 10 O 1.21591 * 120.00098 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99742 * 0.02876 * 9 8 7 12 12 C 1.47029 * 125.64574 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26736 * 178.90119 * 12 11 9 14 14 C 1.55161 * 102.94153 * 337.80298 * 13 12 11 15 15 H 1.08994 * 111.00614 * 277.39731 * 14 13 12 16 16 C 1.53004 * 111.00023 * 153.57758 * 14 13 12 17 17 H 1.08995 * 109.47323 * 299.15742 * 16 14 13 18 18 C 1.53005 * 109.46645 * 179.15951 * 16 14 13 19 19 N 1.46503 * 109.46868 * 59.16372 * 16 14 13 20 20 C 1.36934 * 119.99474 * 204.99705 * 19 16 14 21 21 H 1.08005 * 120.00291 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99612 * 180.02562 * 20 19 16 23 23 N 1.31621 * 120.00332 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99833 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47199 * 59.99720 * 24 22 20 26 26 H 1.48500 * 109.46968 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47087 * 299.99414 * 24 22 20 28 28 C 1.47421 * 125.64771 * 179.97438 * 11 9 8 29 29 C 1.41200 * 107.25196 * 0.22646 * 8 7 6 30 30 C 1.37945 * 119.80864 * 359.97438 * 6 5 4 31 31 H 1.09007 * 109.47169 * 269.98050 * 1 2 3 32 32 H 1.09007 * 109.46876 * 29.97921 * 1 2 3 33 33 H 1.09003 * 109.47006 * 149.97946 * 1 2 3 34 34 H 1.08000 * 120.13987 * 0.04278 * 3 2 1 35 35 H 1.08000 * 119.70623 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.62799 * 180.02562 * 5 4 3 37 37 H 1.08003 * 125.61185 * 0.03420 * 7 6 5 38 38 H 1.08991 * 109.87923 * 59.48133 * 12 11 9 39 39 H 1.09001 * 110.01088 * 298.38616 * 12 11 9 40 40 H 1.09002 * 110.71326 * 219.44803 * 13 12 11 41 41 H 1.08997 * 110.72352 * 96.17063 * 13 12 11 42 42 H 1.09003 * 109.46504 * 185.24913 * 18 16 14 43 43 H 1.09002 * 109.46914 * 65.25595 * 18 16 14 44 44 H 1.08997 * 109.47404 * 305.25067 * 18 16 14 45 45 H 0.96990 * 120.00136 * 24.99777 * 19 16 14 46 46 H 0.96997 * 120.00051 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.36630 * 85.33436 * 28 11 9 48 48 H 1.08997 * 110.36846 * 323.00806 * 28 11 9 49 49 H 1.08007 * 126.56792 * 179.75146 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6008 1.1565 -0.0005 5 6 4.2727 -0.0090 -0.0006 6 7 3.6005 -1.2077 -0.0006 7 6 4.0499 -2.4820 -0.0010 8 6 2.9650 -3.3358 -0.0002 9 6 3.0120 -4.8100 -0.0009 10 8 1.9789 -5.4512 -0.0005 11 7 4.2001 -5.4464 -0.0018 12 6 5.5195 -4.7977 -0.0018 13 6 6.5807 -5.9179 0.0251 14 6 5.7985 -7.1235 0.6099 15 1 5.7632 -7.0755 1.6982 16 6 6.4032 -8.4487 0.1416 17 1 6.3507 -8.5079 -0.9455 18 6 5.6198 -9.6114 0.7542 19 7 7.8028 -8.5244 0.5679 20 6 8.6868 -9.3110 -0.1214 21 1 8.3521 -9.8758 -0.9790 22 6 10.0127 -9.3832 0.2828 23 7 10.4205 -8.6953 1.3283 24 14 11.2188 -10.4556 -0.6578 25 1 11.2979 -9.9932 -2.0667 26 1 12.5610 -10.3594 -0.0297 27 1 10.7565 -11.8665 -0.6251 28 6 4.3918 -6.9080 -0.0021 29 6 1.8020 -2.5351 -0.0045 30 6 2.2211 -1.2203 0.0000 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1113 0.0007 35 1 4.1460 2.0888 -0.0010 36 1 5.3528 -0.0026 -0.0006 37 1 5.0872 -2.7830 -0.0010 38 1 5.6228 -4.1678 0.8817 39 1 5.6391 -4.1954 -0.9024 40 1 7.4122 -5.6457 0.6753 41 1 6.9337 -6.1391 -0.9821 42 1 6.1058 -10.5525 0.4967 43 1 4.6021 -9.6094 0.3639 44 1 5.5935 -9.5007 1.8382 45 1 8.1033 -8.0175 1.3383 46 1 11.3470 -8.7461 1.6109 47 1 4.3580 -7.2949 -1.0205 48 1 3.6325 -7.3904 0.6134 49 1 0.7801 -2.8847 -0.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279039315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:51 Heat of formation + Delta-G solvation = 55.093053 kcal Electronic energy + Delta-G solvation = -28991.966068 eV Core-core repulsion = 25113.275832 eV Total energy + Delta-G solvation = -3878.690236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.51618 -39.88360 -37.74376 -36.85328 -35.20441 -34.39686 -32.48433 -30.96803 -30.25858 -29.52365 -28.65230 -27.31509 -27.23720 -25.01064 -23.74655 -22.75980 -22.24486 -21.34700 -21.18948 -19.63585 -19.28356 -17.58973 -17.44640 -17.05351 -16.31746 -15.98380 -15.74716 -15.55178 -14.88211 -14.69196 -14.48056 -14.12656 -13.81011 -13.66977 -13.60881 -13.46971 -13.18615 -13.11310 -12.75759 -12.56232 -12.41602 -12.19159 -12.07096 -12.02720 -11.83114 -11.56888 -11.42260 -11.16310 -10.88057 -10.70328 -10.58175 -10.41653 -10.35123 -10.24011 -9.97272 -9.81324 -9.63171 -8.91807 -8.82796 -8.51663 -7.62012 -6.97131 -5.77848 -3.06018 0.44266 1.06669 1.96607 2.38188 3.08540 3.14448 3.42894 3.47952 3.48265 3.51179 4.13373 4.32145 4.46645 4.50976 4.58612 4.62139 4.76959 4.85329 4.86773 5.10031 5.11528 5.15076 5.23687 5.24531 5.31429 5.43919 5.52147 5.54042 5.61622 5.65667 5.70036 5.79486 5.89940 5.93854 6.00533 6.03074 6.05531 6.08913 6.22817 6.30709 6.39809 6.45273 6.51477 6.58927 6.62958 6.66211 6.88497 6.96551 7.11643 7.60847 7.69238 8.28157 8.40900 9.52299 10.09597 10.44795 11.44705 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.002151 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.584446 B =13012.903088 C =14141.208322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 C -0.144 4.144 4 C -0.130 4.130 5 C 0.034 3.966 6 N -0.338 5.338 7 C -0.020 4.020 8 C -0.163 4.163 9 C 0.599 3.401 10 O -0.544 6.544 11 N -0.611 5.611 12 C 0.090 3.910 13 C -0.116 4.116 14 C -0.102 4.102 15 H 0.081 0.919 16 C 0.185 3.815 17 H 0.050 0.950 18 C -0.168 4.168 19 N -0.722 5.722 20 C -0.235 4.235 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.116 3.884 29 C -0.133 4.133 30 C 0.025 3.975 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.162 0.838 37 H 0.190 0.810 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.045 0.955 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.078 0.922 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 21.939 -2.354 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.040 4.040 3 C -0.164 4.164 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.001 5.001 7 C -0.153 4.153 8 C -0.171 4.171 9 C 0.389 3.611 10 O -0.422 6.422 11 N -0.344 5.344 12 C -0.032 4.032 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.099 0.901 16 C 0.075 3.925 17 H 0.067 0.933 18 C -0.228 4.228 19 N -0.363 5.363 20 C -0.366 4.366 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.007 4.007 29 C -0.158 4.158 30 C -0.079 4.079 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.206 0.794 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.371 21.688 -2.477 27.286 hybrid contribution 1.134 -0.366 -0.156 1.201 sum -15.237 21.322 -2.634 26.339 Atomic orbital electron populations 1.20744 0.89619 1.03460 1.02987 1.19380 0.96482 0.90117 0.98000 1.20808 0.93691 0.97842 1.04074 1.20696 0.94808 0.97077 1.02444 1.21678 0.98497 0.83145 1.05087 1.41347 1.07163 1.05461 1.46124 1.23059 1.00427 0.80371 1.11419 1.19583 0.93347 0.92499 1.11658 1.17038 0.82123 0.85688 0.76250 1.90763 1.32553 1.67553 1.51341 1.48357 1.05215 1.08061 1.72779 1.22461 0.82969 0.97028 1.00781 1.22595 0.96503 0.93039 1.03220 1.22685 0.92750 0.96426 1.00384 0.90110 1.20137 0.85715 0.89802 0.96894 0.93250 1.22488 0.98448 1.01154 1.00698 1.42354 1.03029 1.55377 1.35532 1.19177 0.89645 1.19491 1.08335 0.91281 1.24713 0.97241 1.00630 0.98379 1.69643 1.16273 1.45182 1.27126 0.86300 0.80659 0.80328 0.79086 1.21342 1.21789 1.21338 1.22311 0.97650 0.79427 1.01283 1.21044 0.98656 0.88766 1.07308 1.18647 0.81919 0.94913 1.12462 0.90429 0.90893 0.90753 0.84976 0.83692 0.82036 0.79366 0.91320 0.91348 0.89424 0.90010 0.92570 0.94336 0.93585 0.78308 0.93539 0.91188 0.90389 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.91 36.00 0.36 -0.34 16 2 C -0.04 -0.34 5.91 -104.32 -0.62 -0.95 16 3 C -0.14 -1.02 9.72 -39.49 -0.38 -1.41 16 4 C -0.13 -0.84 9.97 -39.91 -0.40 -1.24 16 5 C 0.03 0.26 10.89 -16.35 -0.18 0.08 16 6 N -0.34 -3.54 2.92 -60.42 -0.18 -3.72 16 7 C -0.02 -0.22 10.09 -16.17 -0.16 -0.38 16 8 C -0.16 -2.21 6.10 -105.07 -0.64 -2.85 16 9 C 0.60 9.46 7.85 -12.49 -0.10 9.37 16 10 O -0.54 -10.29 17.17 5.29 0.09 -10.20 16 11 N -0.61 -8.74 3.33 -171.76 -0.57 -9.31 16 12 C 0.09 1.07 4.99 -3.06 -0.02 1.05 16 13 C -0.12 -1.64 6.07 -24.89 -0.15 -1.79 16 14 C -0.10 -1.59 2.62 -88.47 -0.23 -1.82 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 16 C 0.18 3.45 2.43 -67.92 -0.16 3.28 16 17 H 0.05 0.95 7.99 -51.93 -0.42 0.53 16 18 C -0.17 -2.98 9.29 37.16 0.35 -2.63 16 19 N -0.72 -16.95 4.76 -53.42 -0.25 -17.20 16 20 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 21 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C 0.12 1.71 5.75 -2.53 -0.01 1.69 16 29 C -0.13 -1.69 10.27 -38.55 -0.40 -2.08 16 30 C 0.02 0.28 6.60 -84.00 -0.55 -0.28 16 31 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 33 H 0.07 0.48 7.69 -51.93 -0.40 0.08 16 34 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.19 1.67 4.34 -52.48 -0.23 1.45 16 38 H 0.07 0.72 6.84 -51.93 -0.36 0.36 16 39 H 0.07 0.70 7.00 -51.93 -0.36 0.34 16 40 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.04 0.58 7.75 -51.93 -0.40 0.18 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.07 1.03 7.97 -51.93 -0.41 0.61 16 48 H 0.08 1.19 8.04 -51.93 -0.42 0.78 16 49 H 0.15 1.82 7.93 -52.48 -0.42 1.40 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -33.23 396.47 -10.28 -43.51 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.49 Total: 7.77 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.55 Total: -7.19 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.28 Total: -56.79 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.23 -10.28 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279039315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.599 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds