Wall clock time and date at job start Wed Apr 1 2020 00:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35743 * 120.33427 * 2 1 4 4 C 1.40831 * 119.71958 * 180.02562 * 3 2 1 5 5 C 1.34529 * 120.58144 * 359.97438 * 4 3 2 6 6 N 1.37437 * 120.74911 * 0.02562 * 5 4 3 7 7 C 1.35123 * 131.28765 * 179.97438 * 6 5 4 8 8 C 1.38056 * 108.77377 * 179.97438 * 7 6 5 9 9 C 1.47500 * 126.37800 * 179.97438 * 8 7 6 10 10 O 1.21591 * 120.00098 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99742 * 0.02876 * 9 8 7 12 12 C 1.47029 * 125.64574 * 0.02562 * 11 9 8 13 13 C 1.54327 * 107.26736 * 178.90119 * 12 11 9 14 14 C 1.55161 * 102.94153 * 337.80298 * 13 12 11 15 15 H 1.08994 * 111.00614 * 277.39731 * 14 13 12 16 16 C 1.53004 * 111.00023 * 153.57758 * 14 13 12 17 17 H 1.08995 * 109.47323 * 299.15742 * 16 14 13 18 18 C 1.53005 * 109.46645 * 179.15951 * 16 14 13 19 19 N 1.46503 * 109.46868 * 59.16372 * 16 14 13 20 20 C 1.36934 * 119.99474 * 204.99705 * 19 16 14 21 21 H 1.08005 * 120.00291 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99612 * 180.02562 * 20 19 16 23 23 N 1.31621 * 120.00332 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99833 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47199 * 59.99720 * 24 22 20 26 26 H 1.48500 * 109.46968 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47087 * 299.99414 * 24 22 20 28 28 C 1.47421 * 125.64771 * 179.97438 * 11 9 8 29 29 C 1.41200 * 107.25196 * 0.22646 * 8 7 6 30 30 C 1.37945 * 119.80864 * 359.97438 * 6 5 4 31 31 H 1.09007 * 109.47169 * 269.98050 * 1 2 3 32 32 H 1.09007 * 109.46876 * 29.97921 * 1 2 3 33 33 H 1.09003 * 109.47006 * 149.97946 * 1 2 3 34 34 H 1.08000 * 120.13987 * 0.04278 * 3 2 1 35 35 H 1.08000 * 119.70623 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.62799 * 180.02562 * 5 4 3 37 37 H 1.08003 * 125.61185 * 0.03420 * 7 6 5 38 38 H 1.08991 * 109.87923 * 59.48133 * 12 11 9 39 39 H 1.09001 * 110.01088 * 298.38616 * 12 11 9 40 40 H 1.09002 * 110.71326 * 219.44803 * 13 12 11 41 41 H 1.08997 * 110.72352 * 96.17063 * 13 12 11 42 42 H 1.09003 * 109.46504 * 185.24913 * 18 16 14 43 43 H 1.09002 * 109.46914 * 65.25595 * 18 16 14 44 44 H 1.08997 * 109.47404 * 305.25067 * 18 16 14 45 45 H 0.96990 * 120.00136 * 24.99777 * 19 16 14 46 46 H 0.96997 * 120.00051 * 179.97438 * 23 22 20 47 47 H 1.09002 * 110.36630 * 85.33436 * 28 11 9 48 48 H 1.08997 * 110.36846 * 323.00806 * 28 11 9 49 49 H 1.08007 * 126.56792 * 179.75146 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1716 0.0000 4 6 3.6008 1.1565 -0.0005 5 6 4.2727 -0.0090 -0.0006 6 7 3.6005 -1.2077 -0.0006 7 6 4.0499 -2.4820 -0.0010 8 6 2.9650 -3.3358 -0.0002 9 6 3.0120 -4.8100 -0.0009 10 8 1.9789 -5.4512 -0.0005 11 7 4.2001 -5.4464 -0.0018 12 6 5.5195 -4.7977 -0.0018 13 6 6.5807 -5.9179 0.0251 14 6 5.7985 -7.1235 0.6099 15 1 5.7632 -7.0755 1.6982 16 6 6.4032 -8.4487 0.1416 17 1 6.3507 -8.5079 -0.9455 18 6 5.6198 -9.6114 0.7542 19 7 7.8028 -8.5244 0.5679 20 6 8.6868 -9.3110 -0.1214 21 1 8.3521 -9.8758 -0.9790 22 6 10.0127 -9.3832 0.2828 23 7 10.4205 -8.6953 1.3283 24 14 11.2188 -10.4556 -0.6578 25 1 11.2979 -9.9932 -2.0667 26 1 12.5610 -10.3594 -0.0297 27 1 10.7565 -11.8665 -0.6251 28 6 4.3918 -6.9080 -0.0021 29 6 1.8020 -2.5351 -0.0045 30 6 2.2211 -1.2203 0.0000 31 1 -0.3634 -0.0003 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6603 2.1113 0.0007 35 1 4.1460 2.0888 -0.0010 36 1 5.3528 -0.0026 -0.0006 37 1 5.0872 -2.7830 -0.0010 38 1 5.6228 -4.1678 0.8817 39 1 5.6391 -4.1954 -0.9024 40 1 7.4122 -5.6457 0.6753 41 1 6.9337 -6.1391 -0.9821 42 1 6.1058 -10.5525 0.4967 43 1 4.6021 -9.6094 0.3639 44 1 5.5935 -9.5007 1.8382 45 1 8.1033 -8.0175 1.3383 46 1 11.3470 -8.7461 1.6109 47 1 4.3580 -7.2949 -1.0205 48 1 3.6325 -7.3904 0.6134 49 1 0.7801 -2.8847 -0.0089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279039315.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:49 Heat of formation + Delta-G solvation = 36.942122 kcal Electronic energy + Delta-G solvation = -28992.753152 eV Core-core repulsion = 25113.275832 eV Total energy + Delta-G solvation = -3879.477319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.27480 -41.04900 -39.01419 -37.58014 -36.78823 -35.03857 -34.25695 -32.19467 -31.24607 -30.84056 -29.78150 -28.52937 -27.80656 -26.40002 -25.33654 -23.60674 -23.21871 -22.55556 -22.01157 -21.07700 -20.31222 -19.12294 -18.36378 -18.21530 -17.46622 -16.75191 -16.74039 -16.54816 -16.29562 -15.84879 -15.51412 -15.33412 -15.07765 -14.88366 -14.68518 -14.42147 -14.15051 -14.09994 -13.87925 -13.73256 -13.62577 -13.43072 -13.25671 -13.12264 -12.75645 -12.69160 -12.56369 -12.35110 -12.25678 -12.19802 -12.06849 -11.98211 -11.62924 -11.52059 -11.36416 -11.15454 -11.11046 -10.88577 -9.80186 -9.52514 -8.95046 -8.32124 -7.88642 -5.15237 -0.21275 0.35743 1.04076 1.50403 1.51843 1.57599 1.64051 2.00084 2.41208 2.54180 2.59928 3.36927 3.45043 3.52028 3.64202 3.72689 3.84011 3.89376 3.96489 4.08466 4.11941 4.22282 4.27770 4.36683 4.40736 4.48243 4.50973 4.60950 4.67452 4.72884 4.75349 4.78919 4.82947 4.88797 4.90283 4.99788 5.07380 5.13476 5.16768 5.21196 5.25339 5.32520 5.39250 5.41213 5.46588 5.57409 5.62559 5.64769 5.88560 6.28238 6.33490 6.46936 7.10418 7.40797 8.16569 8.41043 9.34303 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020395 B = 0.002151 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.584446 B =13012.903088 C =14141.208322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.131 4.131 4 C -0.125 4.125 5 C 0.016 3.984 6 N -0.340 5.340 7 C -0.015 4.015 8 C -0.192 4.192 9 C 0.596 3.404 10 O -0.588 6.588 11 N -0.611 5.611 12 C 0.096 3.904 13 C -0.110 4.110 14 C -0.093 4.093 15 H 0.078 0.922 16 C 0.183 3.817 17 H 0.047 0.953 18 C -0.161 4.161 19 N -0.729 5.729 20 C -0.231 4.231 21 H 0.072 0.928 22 C -0.074 4.074 23 N -0.967 5.967 24 Si 0.965 3.035 25 H -0.279 1.279 26 H -0.298 1.298 27 H -0.283 1.283 28 C 0.121 3.879 29 C -0.166 4.166 30 C 0.023 3.977 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.193 0.807 37 H 0.211 0.789 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.374 0.626 46 H 0.249 0.751 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 24.843 -3.061 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.152 4.152 4 C -0.144 4.144 5 C -0.101 4.101 6 N -0.003 5.003 7 C -0.148 4.148 8 C -0.199 4.199 9 C 0.388 3.612 10 O -0.470 6.470 11 N -0.342 5.342 12 C -0.026 4.026 13 C -0.149 4.149 14 C -0.113 4.113 15 H 0.096 0.904 16 C 0.074 3.926 17 H 0.065 0.935 18 C -0.220 4.220 19 N -0.369 5.369 20 C -0.363 4.363 21 H 0.090 0.910 22 C -0.266 4.266 23 N -0.618 5.618 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.225 1.225 27 H -0.210 1.210 28 C -0.002 4.002 29 C -0.190 4.190 30 C -0.083 4.083 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.179 0.821 35 H 0.199 0.801 36 H 0.210 0.790 37 H 0.227 0.773 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.206 0.794 46 H 0.058 0.942 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.154 24.600 -3.210 29.604 hybrid contribution 0.986 -1.105 0.049 1.482 sum -15.168 23.495 -3.161 28.144 Atomic orbital electron populations 1.20770 0.88441 1.03970 1.03416 1.19699 0.97634 0.89823 0.99672 1.21296 0.94380 0.98312 1.01169 1.21241 0.94769 0.98142 1.00255 1.22381 1.00151 0.82335 1.05193 1.41562 1.07084 1.06166 1.45465 1.23179 1.00515 0.80418 1.10724 1.19462 0.94801 0.91365 1.14285 1.17410 0.81716 0.86666 0.75439 1.90721 1.34013 1.68639 1.53642 1.48371 1.05833 1.07845 1.72190 1.22554 0.80718 0.96318 1.02968 1.22504 0.96829 0.93229 1.02288 1.22469 0.93274 0.95354 1.00187 0.90373 1.20286 0.83703 0.91849 0.96770 0.93470 1.22370 0.99552 0.99539 1.00573 1.42478 1.04615 1.54785 1.35007 1.19509 0.90140 1.18703 1.07938 0.90984 1.25417 0.98995 1.02533 0.99647 1.69786 1.16100 1.47077 1.28820 0.85341 0.78240 0.78843 0.78109 1.20503 1.22469 1.20997 1.22183 0.96715 0.80186 1.01146 1.21064 0.98380 0.89889 1.09677 1.18920 0.82719 0.95132 1.11489 0.90024 0.88803 0.91831 0.82101 0.80080 0.79041 0.77299 0.89273 0.88991 0.89983 0.90933 0.94464 0.91707 0.93795 0.79372 0.94228 0.90978 0.91065 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 9.91 71.24 0.71 -0.54 16 2 C -0.07 -1.06 5.91 -19.67 -0.12 -1.18 16 3 C -0.13 -1.40 9.72 22.33 0.22 -1.18 16 4 C -0.12 -1.08 9.97 22.05 0.22 -0.86 16 5 C 0.02 0.19 10.89 82.96 0.90 1.09 16 6 N -0.34 -6.49 2.92 -345.07 -1.01 -7.50 16 7 C -0.01 -0.31 10.09 84.14 0.85 0.54 16 8 C -0.19 -5.26 6.10 -20.15 -0.12 -5.39 16 9 C 0.60 19.27 7.85 86.69 0.68 19.95 16 10 O -0.59 -23.35 17.17 -4.00 -0.07 -23.42 16 11 N -0.61 -17.23 3.33 -815.58 -2.71 -19.94 16 12 C 0.10 2.11 4.99 86.73 0.43 2.55 16 13 C -0.11 -3.03 6.07 31.79 0.19 -2.84 16 14 C -0.09 -2.84 2.62 -9.40 -0.02 -2.87 16 15 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 16 C 0.18 6.78 2.43 44.99 0.11 6.89 16 17 H 0.05 1.79 7.99 -2.39 -0.02 1.77 16 18 C -0.16 -5.64 9.29 71.98 0.67 -4.97 16 19 N -0.73 -34.40 4.76 -322.92 -1.54 -35.94 16 20 C -0.23 -12.28 9.93 84.03 0.83 -11.44 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 23 N -0.97 -57.18 13.06 21.65 0.28 -56.90 16 24 Si 0.96 45.28 29.55 68.60 2.03 47.30 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 28 C 0.12 3.54 5.75 86.86 0.50 4.03 16 29 C -0.17 -4.40 10.27 22.94 0.24 -4.16 16 30 C 0.02 0.50 6.60 38.90 0.26 0.75 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 0.63 8.09 -2.38 -0.02 0.61 16 33 H 0.06 0.85 7.69 -2.39 -0.02 0.83 16 34 H 0.16 0.76 8.06 -2.91 -0.02 0.73 16 35 H 0.18 0.25 8.06 -2.91 -0.02 0.22 16 36 H 0.19 0.97 8.06 -2.91 -0.02 0.94 16 37 H 0.21 3.17 4.34 -2.91 -0.01 3.16 16 38 H 0.09 1.65 6.84 -2.39 -0.02 1.63 16 39 H 0.09 1.65 7.00 -2.39 -0.02 1.63 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.07 2.14 8.04 -2.39 -0.02 2.12 16 42 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.92 7.75 -2.39 -0.02 1.90 16 44 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.37 18.94 7.80 -92.72 -0.72 18.22 16 46 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 47 H 0.07 2.09 7.97 -2.39 -0.02 2.07 16 48 H 0.07 2.19 8.04 -2.39 -0.02 2.17 16 49 H 0.14 3.82 7.93 -2.91 -0.02 3.80 16 Total: -1.00 -73.85 396.47 4.23 -69.62 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.24 Total: 30.03 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 7.01 Total: -3.26 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -4.97 Total: -120.28 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.07 Total: -23.42 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.85 4.23 -69.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279039315.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.566 kcal (2) G-P(sol) polarization free energy of solvation -73.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds