Wall clock time and date at job start Wed Apr 1 2020 00:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 126.49902 * 2 1 4 4 N 1.36829 * 109.92567 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.06175 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47135 * 264.97688 * 5 4 3 7 7 O 1.21278 * 120.00043 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00385 * 179.97438 * 8 6 5 10 10 C 1.53777 * 113.61665 * 254.14110 * 9 8 6 11 11 C 1.54055 * 86.98275 * 270.83678 * 10 9 8 12 12 C 1.52999 * 113.61692 * 220.01873 * 11 10 9 13 13 N 1.46501 * 109.47756 * 272.49620 * 12 11 10 14 14 C 1.36928 * 120.00536 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00192 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99659 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99853 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47319 * 90.00098 * 18 16 14 20 20 H 1.48497 * 109.47048 * 209.99979 * 18 16 14 21 21 H 1.48500 * 109.47374 * 330.00052 * 18 16 14 22 22 C 1.53778 * 113.61401 * 156.52909 * 9 8 6 23 23 C 1.37682 * 109.87722 * 359.97438 * 4 3 2 24 24 C 1.39125 * 133.50802 * 180.02562 * 23 4 3 25 25 C 1.37745 * 119.78036 * 179.97438 * 24 23 4 26 26 C 1.38826 * 120.66763 * 0.02562 * 25 24 23 27 27 C 1.36629 * 120.52953 * 359.97438 * 26 25 24 28 28 C 1.39636 * 119.75900 * 359.69787 * 27 26 25 29 29 H 1.09002 * 109.47152 * 90.02575 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02675 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02656 * 1 2 3 32 32 H 1.07991 * 125.03554 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46881 * 24.97539 * 5 4 3 34 34 H 1.08999 * 109.47081 * 144.97427 * 5 4 3 35 35 H 0.97005 * 119.99190 * 0.02562 * 8 6 5 36 36 H 1.09007 * 112.84738 * 25.33921 * 9 8 6 37 37 H 1.08998 * 113.61588 * 25.43218 * 10 9 8 38 38 H 1.09000 * 113.61418 * 156.33439 * 10 9 8 39 39 H 1.09000 * 113.68545 * 89.12976 * 11 10 9 40 40 H 1.09007 * 109.47487 * 32.50172 * 12 11 10 41 41 H 1.09001 * 109.46959 * 152.49754 * 12 11 10 42 42 H 0.97004 * 119.99210 * 0.02562 * 13 12 11 43 43 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 44 44 H 1.08996 * 113.61356 * 203.66643 * 22 9 8 45 45 H 1.08997 * 113.61635 * 334.57152 * 22 9 8 46 46 H 1.07999 * 120.10805 * 0.02562 * 24 23 4 47 47 H 1.08006 * 119.66446 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.74038 * 179.97438 * 26 25 24 49 49 H 1.07993 * 120.12030 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7656 1.5981 -0.0002 6 6 5.2364 1.8133 -1.4155 7 8 4.6686 1.2612 -2.3340 8 7 6.2884 2.6195 -1.6606 9 6 6.7464 2.8283 -3.0364 10 6 8.0550 2.0921 -3.3685 11 6 8.7931 3.3511 -2.8752 12 6 10.0079 3.7229 -3.7278 13 7 11.1882 3.0094 -3.2339 14 6 12.4007 3.1863 -3.8450 15 1 12.4870 3.8522 -4.6910 16 6 13.5190 2.5097 -3.3773 17 7 14.6843 2.6794 -3.9651 18 14 13.3698 1.3586 -1.9138 19 1 13.0486 -0.0104 -2.3915 20 1 14.6549 1.3345 -1.1700 21 1 12.2874 1.8364 -1.0165 22 6 7.5233 4.1405 -3.2345 23 6 3.6963 -0.6857 -0.0004 24 6 4.7589 -1.5838 -0.0003 25 6 4.5097 -2.9385 0.0004 26 6 3.2072 -3.4188 0.0005 27 6 2.1488 -2.5548 0.0005 28 6 2.3784 -1.1775 0.0067 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9635 2.1034 -0.0004 33 1 4.4724 2.5538 0.4345 34 1 5.5730 1.1634 0.5891 35 1 6.7427 3.0608 -0.9259 36 1 5.9583 2.6719 -3.7731 37 1 8.2296 1.2115 -2.7503 38 1 8.1881 1.8967 -4.4325 39 1 9.0128 3.3398 -1.8076 40 1 9.8227 3.4445 -4.7653 41 1 10.1804 4.7974 -3.6653 42 1 11.1107 2.4116 -2.4739 43 1 15.4659 2.2069 -3.6381 44 1 7.5114 4.5040 -4.2620 45 1 7.2689 4.9124 -2.5083 46 1 5.7757 -1.2199 0.0000 47 1 5.3360 -3.6340 0.0001 48 1 3.0290 -4.4840 0.0007 49 1 1.1382 -2.9357 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282064134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:36 Heat of formation + Delta-G solvation = 62.311203 kcal Electronic energy + Delta-G solvation = -28520.340062 eV Core-core repulsion = 24641.962829 eV Total energy + Delta-G solvation = -3878.377233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71275 -40.29875 -38.54471 -37.13716 -34.78824 -34.05745 -33.32543 -31.26984 -30.64878 -30.05147 -28.77264 -27.27413 -25.69929 -25.61173 -23.35176 -22.86008 -21.94572 -21.41672 -20.97653 -19.75928 -19.35330 -17.85141 -17.50161 -17.19243 -16.82648 -15.97144 -15.63144 -15.49333 -15.09023 -14.77741 -14.46662 -14.30739 -14.13200 -14.02885 -13.79363 -13.56427 -13.37117 -13.02956 -13.01178 -12.74905 -12.54879 -12.45698 -12.36943 -12.31135 -11.85777 -11.74313 -11.59202 -11.47311 -10.98359 -10.93173 -10.73381 -10.34603 -10.24244 -10.23930 -9.95915 -9.65660 -9.60785 -9.24001 -8.90684 -8.34836 -7.75197 -7.24557 -5.78960 -3.14142 0.95643 1.44788 2.20041 2.22604 2.49940 2.95719 3.33391 3.36801 3.42319 3.76273 4.23504 4.27567 4.44479 4.50046 4.51312 4.56193 4.56874 4.59677 4.77080 4.91613 4.92448 4.94474 5.04908 5.13436 5.34389 5.47347 5.50129 5.52364 5.53603 5.55604 5.62448 5.69001 5.73278 5.76289 5.77574 5.88088 5.98365 6.02113 6.02314 6.16974 6.32064 6.44277 6.45045 6.55987 6.60874 6.63436 6.76322 6.96602 7.03183 7.18880 7.86456 7.97529 8.40311 9.19507 9.91960 10.11996 11.39570 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002208 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.932313 B =12680.368562 C =14025.662223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.173 4.173 3 C 0.056 3.944 4 N -0.468 5.468 5 C 0.092 3.908 6 C 0.492 3.508 7 O -0.517 6.517 8 N -0.707 5.707 9 C 0.116 3.884 10 C -0.141 4.141 11 C -0.118 4.118 12 C 0.166 3.834 13 N -0.755 5.755 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.002 3.998 17 N -0.934 5.934 18 Si 0.886 3.114 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.135 4.135 23 C 0.111 3.889 24 C -0.126 4.126 25 C -0.099 4.099 26 C -0.148 4.148 27 C -0.072 4.072 28 C -0.103 4.103 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.165 0.835 33 H 0.121 0.879 34 H 0.116 0.884 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.029 0.971 41 H 0.027 0.973 42 H 0.360 0.640 43 H 0.259 0.741 44 H 0.098 0.902 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.563 -3.657 12.248 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.180 4.180 3 C -0.068 4.068 4 N -0.151 5.151 5 C -0.034 4.034 6 C 0.276 3.724 7 O -0.391 6.391 8 N -0.359 5.359 9 C 0.011 3.989 10 C -0.179 4.179 11 C -0.137 4.137 12 C 0.039 3.961 13 N -0.401 5.401 14 C -0.374 4.374 15 H 0.107 0.893 16 C -0.193 4.193 17 N -0.582 5.582 18 Si 0.717 3.283 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.173 4.173 23 C 0.006 3.994 24 C -0.146 4.146 25 C -0.119 4.119 26 C -0.168 4.168 27 C -0.090 4.090 28 C -0.107 4.107 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.182 0.818 33 H 0.139 0.861 34 H 0.134 0.866 35 H 0.236 0.764 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.192 0.808 43 H 0.069 0.931 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.133 0.867 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -29.568 -3.732 11.409 31.912 hybrid contribution 0.643 -0.493 1.309 1.539 sum -28.925 -4.225 12.718 31.879 Atomic orbital electron populations 1.20072 0.89457 1.01998 1.01652 1.20239 0.95145 0.90771 1.11803 1.21507 0.81466 0.99144 1.04636 1.43232 1.04844 1.03671 1.63342 1.21574 0.90085 0.96242 0.95542 1.20945 0.80508 0.79423 0.91507 1.90789 1.55703 1.47084 1.45572 1.45659 1.32337 1.48602 1.09341 1.21958 0.96480 0.97356 0.83101 1.23495 0.94356 0.97594 1.02485 1.22869 0.94631 0.95786 1.00423 1.20620 0.84946 0.95335 0.95183 1.42690 1.05731 1.54064 1.37581 1.19075 0.84309 1.22616 1.11398 0.89257 1.24689 0.95410 1.00125 0.99100 1.69705 0.99191 1.46416 1.42919 0.86519 0.76695 0.81623 0.83471 1.21097 1.21740 1.20515 1.23284 0.95404 0.95564 1.03065 1.18163 0.95526 0.82459 1.03240 1.20025 0.96530 0.92360 1.05698 1.20804 0.97060 0.94102 0.99890 1.20610 0.92446 0.99438 1.04259 1.20221 0.98961 0.90839 0.99018 1.19058 0.91776 0.93221 1.06649 0.91909 0.92015 0.91939 0.81766 0.86142 0.86611 0.76359 0.88256 0.91514 0.88765 0.89567 0.95315 0.95536 0.80768 0.93067 0.88399 0.91092 0.86657 0.85804 0.86138 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.41 36.01 0.37 -0.16 16 2 C -0.17 -1.77 6.32 -102.71 -0.65 -2.42 16 3 C 0.06 0.53 11.19 -16.73 -0.19 0.35 16 4 N -0.47 -4.83 2.27 -115.71 -0.26 -5.10 16 5 C 0.09 0.68 6.48 -5.19 -0.03 0.64 16 6 C 0.49 5.24 7.90 -10.98 -0.09 5.15 16 7 O -0.52 -8.03 16.04 5.56 0.09 -7.94 16 8 N -0.71 -6.44 5.26 -53.02 -0.28 -6.72 16 9 C 0.12 1.29 4.29 -67.13 -0.29 1.00 16 10 C -0.14 -1.87 7.45 -25.78 -0.19 -2.07 16 11 C -0.12 -1.61 3.65 -89.67 -0.33 -1.93 16 12 C 0.17 3.06 6.10 -4.04 -0.02 3.04 16 13 N -0.76 -17.71 5.41 -59.91 -0.32 -18.03 16 14 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 15 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 16 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 17 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 18 Si 0.89 22.08 27.73 -169.99 -4.71 17.36 16 19 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 22 C -0.13 -1.40 7.38 -25.92 -0.19 -1.59 16 23 C 0.11 1.36 6.80 -83.99 -0.57 0.78 16 24 C -0.13 -1.45 10.00 -39.43 -0.39 -1.84 16 25 C -0.10 -1.03 10.01 -39.54 -0.40 -1.43 16 26 C -0.15 -1.46 9.97 -39.95 -0.40 -1.86 16 27 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16 28 C -0.10 -1.22 6.35 -105.14 -0.67 -1.89 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.40 2.58 8.70 -40.82 -0.36 2.22 16 36 H 0.10 1.23 7.50 -51.93 -0.39 0.84 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.31 7.90 -51.93 -0.41 0.90 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.03 0.54 7.85 -51.93 -0.41 0.14 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.36 8.22 5.53 -40.82 -0.23 7.99 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 49 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 407.24 15.07 6.14 6.14 Total: -1.00 -36.99 407.24 -10.98 -47.97 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.72 Total: 7.46 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -4.68 Total: -12.49 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.09 Total: -58.50 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.99 -10.98 -47.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282064134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.285 kcal (2) G-P(sol) polarization free energy of solvation -36.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds