Wall clock time and date at job start Wed Apr 1 2020 00:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34243 * 126.49902 * 2 1 4 4 N 1.36829 * 109.92567 * 180.02562 * 3 2 1 5 5 C 1.46501 * 125.06175 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47135 * 264.97688 * 5 4 3 7 7 O 1.21278 * 120.00043 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00302 * 179.97438 * 6 5 4 9 9 C 1.46493 * 120.00385 * 179.97438 * 8 6 5 10 10 C 1.53777 * 113.61665 * 254.14110 * 9 8 6 11 11 C 1.54055 * 86.98275 * 270.83678 * 10 9 8 12 12 C 1.52999 * 113.61692 * 220.01873 * 11 10 9 13 13 N 1.46501 * 109.47756 * 272.49620 * 12 11 10 14 14 C 1.36928 * 120.00536 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99627 * 0.02562 * 14 13 12 16 16 C 1.38814 * 120.00192 * 180.02562 * 14 13 12 17 17 N 1.31618 * 119.99659 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 119.99853 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47319 * 90.00098 * 18 16 14 20 20 H 1.48497 * 109.47048 * 209.99979 * 18 16 14 21 21 H 1.48500 * 109.47374 * 330.00052 * 18 16 14 22 22 C 1.53778 * 113.61401 * 156.52909 * 9 8 6 23 23 C 1.37682 * 109.87722 * 359.97438 * 4 3 2 24 24 C 1.39125 * 133.50802 * 180.02562 * 23 4 3 25 25 C 1.37745 * 119.78036 * 179.97438 * 24 23 4 26 26 C 1.38826 * 120.66763 * 0.02562 * 25 24 23 27 27 C 1.36629 * 120.52953 * 359.97438 * 26 25 24 28 28 C 1.39636 * 119.75900 * 359.69787 * 27 26 25 29 29 H 1.09002 * 109.47152 * 90.02575 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02675 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02656 * 1 2 3 32 32 H 1.07991 * 125.03554 * 359.97438 * 3 2 1 33 33 H 1.09006 * 109.46881 * 24.97539 * 5 4 3 34 34 H 1.08999 * 109.47081 * 144.97427 * 5 4 3 35 35 H 0.97005 * 119.99190 * 0.02562 * 8 6 5 36 36 H 1.09007 * 112.84738 * 25.33921 * 9 8 6 37 37 H 1.08998 * 113.61588 * 25.43218 * 10 9 8 38 38 H 1.09000 * 113.61418 * 156.33439 * 10 9 8 39 39 H 1.09000 * 113.68545 * 89.12976 * 11 10 9 40 40 H 1.09007 * 109.47487 * 32.50172 * 12 11 10 41 41 H 1.09001 * 109.46959 * 152.49754 * 12 11 10 42 42 H 0.97004 * 119.99210 * 0.02562 * 13 12 11 43 43 H 0.97006 * 119.99623 * 179.97438 * 17 16 14 44 44 H 1.08996 * 113.61356 * 203.66643 * 22 9 8 45 45 H 1.08997 * 113.61635 * 334.57152 * 22 9 8 46 46 H 1.07999 * 120.10805 * 0.02562 * 24 23 4 47 47 H 1.08006 * 119.66446 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.74038 * 179.97438 * 26 25 24 49 49 H 1.07993 * 120.12030 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6170 0.6888 -0.0006 5 6 4.7656 1.5981 -0.0002 6 6 5.2364 1.8133 -1.4155 7 8 4.6686 1.2612 -2.3340 8 7 6.2884 2.6195 -1.6606 9 6 6.7464 2.8283 -3.0364 10 6 8.0550 2.0921 -3.3685 11 6 8.7931 3.3511 -2.8752 12 6 10.0079 3.7229 -3.7278 13 7 11.1882 3.0094 -3.2339 14 6 12.4007 3.1863 -3.8450 15 1 12.4870 3.8522 -4.6910 16 6 13.5190 2.5097 -3.3773 17 7 14.6843 2.6794 -3.9651 18 14 13.3698 1.3586 -1.9138 19 1 13.0486 -0.0104 -2.3915 20 1 14.6549 1.3345 -1.1700 21 1 12.2874 1.8364 -1.0165 22 6 7.5233 4.1405 -3.2345 23 6 3.6963 -0.6857 -0.0004 24 6 4.7589 -1.5838 -0.0003 25 6 4.5097 -2.9385 0.0004 26 6 3.2072 -3.4188 0.0005 27 6 2.1488 -2.5548 0.0005 28 6 2.3784 -1.1775 0.0067 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 1.9635 2.1034 -0.0004 33 1 4.4724 2.5538 0.4345 34 1 5.5730 1.1634 0.5891 35 1 6.7427 3.0608 -0.9259 36 1 5.9583 2.6719 -3.7731 37 1 8.2296 1.2115 -2.7503 38 1 8.1881 1.8967 -4.4325 39 1 9.0128 3.3398 -1.8076 40 1 9.8227 3.4445 -4.7653 41 1 10.1804 4.7974 -3.6653 42 1 11.1107 2.4116 -2.4739 43 1 15.4659 2.2069 -3.6381 44 1 7.5114 4.5040 -4.2620 45 1 7.2689 4.9124 -2.5083 46 1 5.7757 -1.2199 0.0000 47 1 5.3360 -3.6340 0.0001 48 1 3.0290 -4.4840 0.0007 49 1 1.1382 -2.9357 0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282064134.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:35 Heat of formation + Delta-G solvation = 39.286263 kcal Electronic energy + Delta-G solvation = -28521.338498 eV Core-core repulsion = 24641.962829 eV Total energy + Delta-G solvation = -3879.375670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.41858 -41.20243 -39.53085 -37.87248 -36.51042 -34.78305 -34.44130 -33.21330 -31.41892 -30.73030 -29.56624 -28.68687 -26.67203 -26.37300 -24.86457 -23.69998 -23.05580 -22.64920 -21.74210 -20.54378 -20.43110 -19.50784 -18.53290 -17.92395 -17.51101 -16.90626 -16.64034 -16.33389 -16.28874 -15.98364 -15.93237 -15.40058 -15.11634 -14.89120 -14.80262 -14.58860 -14.51310 -13.99196 -13.93986 -13.67844 -13.60723 -13.52363 -13.40203 -13.11808 -12.96313 -12.94288 -12.73945 -12.48962 -12.23629 -12.18794 -11.89795 -11.74974 -11.70073 -11.44361 -11.21720 -11.10407 -10.92439 -10.41306 -10.12189 -9.29423 -9.10466 -8.46050 -8.04486 -5.37579 0.20323 0.67437 1.34538 1.39835 1.43302 1.46939 1.52710 1.83607 2.23069 2.46715 2.98708 3.26523 3.43920 3.53819 3.61118 3.72461 3.75897 3.84131 3.89599 3.92629 4.07654 4.09009 4.13927 4.26328 4.45587 4.47306 4.50719 4.64498 4.69152 4.81719 4.84620 4.86228 4.86723 4.88602 4.95802 4.96349 5.00048 5.09032 5.20458 5.22304 5.30431 5.31335 5.58013 5.61620 5.69484 5.74726 5.84381 5.89683 6.19839 6.28845 6.30527 6.50555 7.06981 7.13303 7.84063 8.03020 9.17178 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.015198 B = 0.002208 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.932313 B =12680.368562 C =14025.662223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.195 4.195 3 C 0.053 3.947 4 N -0.473 5.473 5 C 0.092 3.908 6 C 0.493 3.507 7 O -0.572 6.572 8 N -0.694 5.694 9 C 0.127 3.873 10 C -0.147 4.147 11 C -0.112 4.112 12 C 0.161 3.839 13 N -0.757 5.757 14 C -0.236 4.236 15 H 0.054 0.946 16 C -0.069 4.069 17 N -0.985 5.985 18 Si 0.959 3.041 19 H -0.282 1.282 20 H -0.295 1.295 21 H -0.246 1.246 22 C -0.115 4.115 23 C 0.085 3.915 24 C -0.145 4.145 25 C -0.110 4.110 26 C -0.155 4.155 27 C -0.084 4.084 28 C -0.131 4.131 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.196 0.804 33 H 0.164 0.836 34 H 0.135 0.865 35 H 0.419 0.581 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.021 0.979 41 H 0.027 0.973 42 H 0.366 0.634 43 H 0.258 0.742 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.140 0.860 48 H 0.143 0.857 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.668 -3.148 14.791 35.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.201 4.201 3 C -0.071 4.071 4 N -0.155 5.155 5 C -0.033 4.033 6 C 0.279 3.721 7 O -0.451 6.451 8 N -0.346 5.346 9 C 0.021 3.979 10 C -0.186 4.186 11 C -0.131 4.131 12 C 0.035 3.965 13 N -0.403 5.403 14 C -0.367 4.367 15 H 0.072 0.928 16 C -0.260 4.260 17 N -0.636 5.636 18 Si 0.786 3.214 19 H -0.209 1.209 20 H -0.222 1.222 21 H -0.171 1.171 22 C -0.153 4.153 23 C -0.020 4.020 24 C -0.165 4.165 25 C -0.129 4.129 26 C -0.174 4.174 27 C -0.102 4.102 28 C -0.135 4.135 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.213 0.787 33 H 0.181 0.819 34 H 0.153 0.847 35 H 0.257 0.743 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.199 0.801 43 H 0.066 0.934 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.137 0.863 47 H 0.158 0.842 48 H 0.161 0.839 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -31.710 -3.179 13.987 34.803 hybrid contribution 1.293 -0.603 0.392 1.480 sum -30.416 -3.782 14.379 33.856 Atomic orbital electron populations 1.20097 0.87798 1.03077 1.01832 1.20667 0.96537 0.90552 1.12380 1.22083 0.81182 1.00420 1.03404 1.43456 1.05857 1.03355 1.62862 1.21866 0.90040 0.97909 0.93452 1.21537 0.79921 0.78292 0.92327 1.90775 1.57524 1.49248 1.47514 1.45534 1.31907 1.48144 1.09051 1.21711 0.95040 0.97130 0.84053 1.23510 0.96065 0.97381 1.01659 1.22808 0.93373 0.96797 1.00094 1.20829 0.85194 0.94749 0.95753 1.42709 1.05469 1.54603 1.37504 1.19067 0.86396 1.21039 1.10214 0.92798 1.25580 0.94967 1.02607 1.02839 1.69898 1.00200 1.48240 1.45214 0.85349 0.77342 0.78909 0.79807 1.20853 1.22188 1.17078 1.23196 0.92413 0.95600 1.04122 1.18463 0.95866 0.83719 1.03994 1.20236 0.96787 0.92978 1.06508 1.21116 0.97985 0.94218 0.99612 1.20926 0.92186 1.00616 1.03679 1.20533 1.00050 0.90773 0.98885 1.19526 0.92497 0.94314 1.07183 0.92081 0.90163 0.91663 0.78703 0.81878 0.84689 0.74314 0.89564 0.92446 0.90039 0.88280 0.96127 0.95525 0.80118 0.93356 0.88077 0.88322 0.86256 0.84182 0.83947 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.41 71.24 0.74 -0.19 16 2 C -0.19 -3.80 6.32 -18.62 -0.12 -3.91 16 3 C 0.05 0.90 11.19 83.00 0.93 1.83 16 4 N -0.47 -8.95 2.27 -520.00 -1.18 -10.13 16 5 C 0.09 1.08 6.48 85.63 0.55 1.63 16 6 C 0.49 9.40 7.90 87.66 0.69 10.09 16 7 O -0.57 -17.40 16.04 -3.02 -0.05 -17.45 16 8 N -0.69 -10.49 5.26 -440.05 -2.32 -12.81 16 9 C 0.13 2.53 4.29 45.52 0.20 2.73 16 10 C -0.15 -3.72 7.45 31.21 0.23 -3.49 16 11 C -0.11 -2.76 3.65 -10.18 -0.04 -2.79 16 12 C 0.16 5.74 6.10 86.38 0.53 6.27 16 13 N -0.76 -34.73 5.41 -343.44 -1.86 -36.58 16 14 C -0.24 -13.55 10.47 84.04 0.88 -12.67 16 15 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 16 C -0.07 -4.07 5.50 84.86 0.47 -3.61 16 17 N -0.98 -63.58 13.97 21.65 0.30 -63.28 16 18 Si 0.96 45.23 27.73 68.60 1.90 47.13 16 19 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 22 C -0.11 -2.02 7.38 31.12 0.23 -1.79 16 23 C 0.09 2.04 6.80 39.03 0.27 2.30 16 24 C -0.14 -3.30 10.00 22.37 0.22 -3.08 16 25 C -0.11 -2.25 10.01 22.29 0.22 -2.03 16 26 C -0.16 -2.97 9.97 22.03 0.22 -2.75 16 27 C -0.08 -1.74 10.05 22.23 0.22 -1.51 16 28 C -0.13 -3.08 6.35 -20.20 -0.13 -3.20 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.20 1.84 8.06 -2.92 -0.02 1.81 16 33 H 0.16 0.48 8.12 -2.38 -0.02 0.46 16 34 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.42 3.54 8.70 -92.70 -0.81 2.73 16 36 H 0.09 2.04 7.50 -2.38 -0.02 2.02 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.25 7.90 -2.39 -0.02 2.23 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.02 0.78 7.85 -2.38 -0.02 0.76 16 41 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.37 15.83 5.53 -92.71 -0.51 15.32 16 43 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 44 H 0.10 1.78 8.10 -2.39 -0.02 1.76 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 47 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 48 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 49 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -83.90 407.24 2.71 -81.19 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: -0.42 Total: 28.11 kcal Atomic # 6 Polarization: -22.51 SS G_CDS: 6.32 Total: -16.19 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.05 Total: -122.80 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.90 Total: 47.13 kcal Total: -83.90 2.71 -81.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282064134.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.477 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds