Wall clock time and date at job start Wed Apr 1 2020 01:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00123 * 2 1 4 4 C 1.53002 * 109.47272 * 89.99497 * 3 2 1 5 5 C 1.53000 * 109.47230 * 300.00073 * 4 3 2 6 6 C 1.53010 * 109.46737 * 59.99958 * 4 3 2 7 7 C 1.52993 * 109.46995 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47025 * 180.02562 * 7 4 3 9 9 C 1.36940 * 120.00269 * 180.02562 * 8 7 4 10 10 H 1.07998 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00295 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99893 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00169 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47304 * 59.99765 * 13 11 9 15 15 H 1.48499 * 109.47245 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46895 * 299.99787 * 13 11 9 17 17 C 1.34777 * 119.99578 * 179.97438 * 2 1 3 18 18 O 1.21606 * 120.00001 * 185.14950 * 17 2 1 19 19 C 1.47454 * 120.00447 * 5.16271 * 17 2 1 20 20 C 1.38861 * 120.45720 * 44.27486 * 19 17 2 21 21 C 1.38905 * 120.67052 * 179.71978 * 20 19 17 22 22 C 1.36369 * 121.27497 * 0.57102 * 21 20 19 23 23 C 1.40396 * 119.98086 * 359.71499 * 22 21 20 24 24 C 1.40472 * 121.94954 * 179.97438 * 23 22 21 25 25 N 1.31275 * 119.88631 * 180.02562 * 24 23 22 26 26 C 1.32555 * 122.72817 * 359.97438 * 25 24 23 27 27 C 1.36323 * 121.82401 * 0.02562 * 26 25 24 28 28 C 1.40294 * 118.70218 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46808 * 88.42134 * 1 2 3 30 30 H 1.08997 * 109.47371 * 208.42057 * 1 2 3 31 31 H 1.09000 * 109.47014 * 328.42452 * 1 2 3 32 32 H 1.08999 * 109.47036 * 209.99785 * 3 2 1 33 33 H 1.08997 * 109.46801 * 330.00049 * 3 2 1 34 34 H 1.09003 * 109.46985 * 60.00378 * 5 4 3 35 35 H 1.09007 * 109.46898 * 179.97438 * 5 4 3 36 36 H 1.08991 * 109.47188 * 299.99962 * 5 4 3 37 37 H 1.08999 * 109.47089 * 60.00008 * 6 4 3 38 38 H 1.09000 * 109.46579 * 180.02562 * 6 4 3 39 39 H 1.08996 * 109.46972 * 299.99735 * 6 4 3 40 40 H 1.08998 * 109.47553 * 299.99845 * 7 4 3 41 41 H 1.09001 * 109.47099 * 60.00852 * 7 4 3 42 42 H 0.97001 * 120.00019 * 0.02562 * 8 7 4 43 43 H 0.96995 * 119.99982 * 180.02562 * 12 11 9 44 44 H 1.07992 * 119.66602 * 359.97438 * 20 19 17 45 45 H 1.08006 * 119.36038 * 180.28594 * 21 20 19 46 46 H 1.08000 * 120.00525 * 179.69695 * 22 21 20 47 47 H 1.08000 * 120.05748 * 0.02562 * 24 23 22 48 48 H 1.07996 * 119.08414 * 180.02562 * 26 25 24 49 49 H 1.08001 * 120.65158 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 1.1156 1.8935 2.1637 6 6 3.2794 0.6441 2.1638 7 6 3.2181 3.0351 1.4424 8 7 3.4627 3.4578 2.8237 9 6 4.1360 4.6237 3.0739 10 1 4.4870 5.2314 2.2530 11 6 4.3682 5.0239 4.3826 12 7 3.9408 4.2830 5.3831 13 14 5.2872 6.6139 4.7239 14 1 4.5446 7.7529 4.1268 15 1 5.4041 6.8131 6.1908 16 1 6.6443 6.5396 4.1253 17 6 2.1389 -1.1673 0.0005 18 8 3.3512 -1.1694 0.0950 19 6 1.4061 -2.4417 -0.1138 20 6 0.3807 -2.5835 -1.0394 21 6 -0.3087 -3.7839 -1.1549 22 6 -0.0101 -4.8510 -0.3600 23 6 1.0153 -4.7503 0.5936 24 6 1.3569 -5.8230 1.4338 25 7 2.3228 -5.6841 2.3120 26 6 3.0092 -4.5586 2.4504 27 6 2.7535 -3.4616 1.6825 28 6 1.7343 -3.5348 0.7212 29 1 -0.3633 0.0283 -1.0273 30 1 -0.3634 -0.9038 0.4891 31 1 -0.3633 0.8755 0.5381 32 1 3.1500 1.1383 -0.5138 33 1 1.6085 2.0283 -0.5138 34 1 0.5706 0.9495 2.1638 35 1 1.2973 2.2078 3.1915 36 1 0.5266 2.6530 1.6498 37 1 4.2318 0.5137 1.6500 38 1 3.4606 0.9586 3.1916 39 1 2.7343 -0.2998 2.1639 40 1 4.1705 2.9043 0.9288 41 1 2.6293 3.7949 0.9285 42 1 3.1477 2.9118 3.5610 43 1 4.1028 4.5629 6.2975 44 1 0.1192 -1.7534 -1.6788 45 1 -1.0995 -3.8723 -1.8852 46 1 -0.5626 -5.7731 -0.4639 47 1 0.8259 -6.7603 1.3575 48 1 3.7927 -4.5094 3.1921 49 1 3.3249 -2.5542 1.8111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282336027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:49 Heat of formation + Delta-G solvation = 39.495478 kcal Electronic energy + Delta-G solvation = -30097.549515 eV Core-core repulsion = 26218.182917 eV Total energy + Delta-G solvation = -3879.366597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.41576 -39.99045 -37.69811 -37.14355 -35.19744 -33.39035 -32.95473 -31.51795 -30.39268 -29.86352 -27.96716 -26.81002 -26.10769 -25.45751 -24.53708 -23.81940 -23.28664 -22.23249 -19.82758 -18.50142 -18.35848 -17.65449 -17.22529 -16.98151 -16.58679 -16.03001 -15.74817 -15.05001 -14.68384 -14.50978 -14.43017 -14.15236 -14.07425 -13.71686 -13.55439 -13.37228 -13.21391 -12.97497 -12.79048 -12.57614 -12.43038 -12.25781 -12.19813 -11.96612 -11.75469 -11.24448 -11.11202 -10.96928 -10.77926 -10.72460 -10.50414 -10.29920 -10.22953 -10.02641 -9.81731 -9.64983 -9.62368 -9.42943 -8.82397 -8.62607 -8.36761 -6.85710 -5.72187 -2.99770 -0.12995 0.56108 1.43234 2.44099 2.73443 2.99926 3.46665 3.50947 3.52022 3.79194 4.07527 4.19335 4.31992 4.36833 4.52495 4.61728 4.63367 4.73821 4.92958 5.00823 5.07664 5.14110 5.23808 5.30913 5.37167 5.40103 5.50887 5.53378 5.58928 5.62334 5.65889 5.71802 5.86710 5.90818 5.95181 6.03929 6.12234 6.15912 6.27586 6.31033 6.42280 6.44529 6.53746 6.61923 6.75263 6.79236 6.95762 7.00314 7.24971 7.72289 7.73491 8.04403 8.47381 9.58310 10.17539 10.52265 11.50882 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.002626 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.206464 B =10660.852064 C =11642.803378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.600 5.600 3 C 0.128 3.872 4 C -0.086 4.086 5 C -0.136 4.136 6 C -0.123 4.123 7 C 0.166 3.834 8 N -0.727 5.727 9 C -0.237 4.237 10 H 0.069 0.931 11 C -0.015 4.015 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.287 1.287 17 C 0.557 3.443 18 O -0.517 6.517 19 C -0.116 4.116 20 C -0.064 4.064 21 C -0.129 4.129 22 C -0.066 4.066 23 C -0.118 4.118 24 C 0.141 3.859 25 N -0.485 5.485 26 C 0.079 3.921 27 C -0.143 4.143 28 C 0.010 3.990 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.037 0.963 40 H 0.019 0.981 41 H 0.017 0.983 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 -19.799 -14.946 28.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.332 5.332 3 C 0.005 3.995 4 C -0.087 4.087 5 C -0.194 4.194 6 C -0.180 4.180 7 C 0.038 3.962 8 N -0.373 5.373 9 C -0.368 4.368 10 H 0.087 0.913 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.214 1.214 15 H -0.218 1.218 16 H -0.213 1.213 17 C 0.345 3.655 18 O -0.394 6.394 19 C -0.119 4.119 20 C -0.084 4.084 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.031 4.031 25 N -0.193 5.193 26 C -0.064 4.064 27 C -0.163 4.163 28 C 0.004 3.996 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.035 0.965 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.154 0.846 47 H 0.181 0.819 48 H 0.174 0.826 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.407 -20.228 -14.285 27.698 hybrid contribution 0.080 1.537 -0.082 1.541 sum -12.326 -18.691 -14.368 26.603 Atomic orbital electron populations 1.22136 0.79730 1.04039 1.01621 1.47684 1.06886 1.05965 1.72714 1.21619 0.97274 0.83164 0.97396 1.21112 0.96458 0.97058 0.94072 1.21894 0.95780 0.99810 1.01889 1.21747 0.99288 0.96158 1.00832 1.20575 0.95651 0.91121 0.88896 1.42379 1.68146 1.25782 1.00958 1.19190 1.27712 0.98198 0.91703 0.91346 1.24717 1.01795 0.98966 0.95586 1.69649 1.51649 1.38934 0.98142 0.86271 0.79731 0.83399 0.76804 1.21363 1.21752 1.21332 1.18050 0.87225 0.83194 0.77069 1.90836 1.13312 1.86870 1.48354 1.19924 0.98314 0.94251 0.99410 1.21574 0.92469 0.98167 0.96226 1.20834 1.00714 0.92821 1.00297 1.21143 0.94973 0.99148 0.93325 1.18993 0.98553 0.94905 0.99563 1.23211 0.92945 0.97195 0.89733 1.67437 1.06372 1.26103 1.19356 1.22312 0.97956 0.88019 0.98101 1.22246 0.97283 1.01570 0.95160 1.17878 0.94835 0.92143 0.94756 0.92579 0.91008 0.89871 0.89697 0.90342 0.93651 0.91418 0.93204 0.92381 0.92203 0.94443 0.96299 0.96524 0.78001 0.93538 0.84670 0.84890 0.84561 0.81870 0.82590 0.83058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 7.96 59.85 0.48 1.03 16 2 N -0.60 -6.98 2.40 -182.84 -0.44 -7.41 16 3 C 0.13 1.70 4.60 -4.04 -0.02 1.68 16 4 C -0.09 -1.41 0.60 -154.51 -0.09 -1.50 16 5 C -0.14 -2.13 7.05 37.16 0.26 -1.87 16 6 C -0.12 -2.22 6.89 37.16 0.26 -1.97 16 7 C 0.17 3.37 5.15 -4.04 -0.02 3.35 16 8 N -0.73 -18.55 5.01 -59.91 -0.30 -18.85 16 9 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 10 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 12 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 17 C 0.56 7.42 5.39 -12.51 -0.07 7.36 16 18 O -0.52 -8.61 12.53 5.27 0.07 -8.55 16 19 C -0.12 -1.30 4.87 -104.70 -0.51 -1.81 16 20 C -0.06 -0.51 7.83 -39.10 -0.31 -0.82 16 21 C -0.13 -0.79 9.92 -40.01 -0.40 -1.18 16 22 C -0.07 -0.43 9.79 -39.44 -0.39 -0.82 16 23 C -0.12 -1.13 5.74 -106.88 -0.61 -1.74 16 24 C 0.14 1.31 11.05 -16.95 -0.19 1.12 16 25 N -0.49 -5.70 10.30 -13.11 -0.14 -5.84 16 26 C 0.08 0.95 11.07 -17.93 -0.20 0.75 16 27 C -0.14 -1.86 9.23 -39.50 -0.36 -2.22 16 28 C 0.01 0.12 5.76 -106.55 -0.61 -0.50 16 29 H 0.06 0.33 7.14 -51.93 -0.37 -0.04 16 30 H 0.07 0.56 6.29 -51.93 -0.33 0.23 16 31 H 0.08 0.69 5.98 -51.93 -0.31 0.38 16 32 H 0.08 1.24 7.50 -51.93 -0.39 0.85 16 33 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 0.61 5.96 -51.93 -0.31 0.30 16 35 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 36 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 37 H 0.06 1.12 7.63 -51.93 -0.40 0.72 16 38 H 0.06 1.23 6.86 -51.93 -0.36 0.87 16 39 H 0.04 0.63 5.90 -51.93 -0.31 0.32 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.30 5.36 -40.82 -0.22 10.08 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 0.81 6.35 -52.49 -0.33 0.48 16 45 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 46 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 47 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.15 2.18 6.06 -52.49 -0.32 1.87 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -34.56 381.26 -9.30 -43.86 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.91 Total: 7.71 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.03 Total: -6.53 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.15 Total: -59.98 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.56 -9.30 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282336027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.355 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds