Wall clock time and date at job start Wed Apr 1 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00123 * 2 1 4 4 C 1.53002 * 109.47272 * 89.99497 * 3 2 1 5 5 C 1.53000 * 109.47230 * 300.00073 * 4 3 2 6 6 C 1.53010 * 109.46737 * 59.99958 * 4 3 2 7 7 C 1.52993 * 109.46995 * 179.97438 * 4 3 2 8 8 N 1.46503 * 109.47025 * 180.02562 * 7 4 3 9 9 C 1.36940 * 120.00269 * 180.02562 * 8 7 4 10 10 H 1.07998 * 119.99888 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00295 * 180.02562 * 9 8 7 12 12 N 1.31628 * 119.99893 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00169 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47304 * 59.99765 * 13 11 9 15 15 H 1.48499 * 109.47245 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46895 * 299.99787 * 13 11 9 17 17 C 1.34777 * 119.99578 * 179.97438 * 2 1 3 18 18 O 1.21606 * 120.00001 * 185.14950 * 17 2 1 19 19 C 1.47454 * 120.00447 * 5.16271 * 17 2 1 20 20 C 1.38861 * 120.45720 * 44.27486 * 19 17 2 21 21 C 1.38905 * 120.67052 * 179.71978 * 20 19 17 22 22 C 1.36369 * 121.27497 * 0.57102 * 21 20 19 23 23 C 1.40396 * 119.98086 * 359.71499 * 22 21 20 24 24 C 1.40472 * 121.94954 * 179.97438 * 23 22 21 25 25 N 1.31275 * 119.88631 * 180.02562 * 24 23 22 26 26 C 1.32555 * 122.72817 * 359.97438 * 25 24 23 27 27 C 1.36323 * 121.82401 * 0.02562 * 26 25 24 28 28 C 1.40294 * 118.70218 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.46808 * 88.42134 * 1 2 3 30 30 H 1.08997 * 109.47371 * 208.42057 * 1 2 3 31 31 H 1.09000 * 109.47014 * 328.42452 * 1 2 3 32 32 H 1.08999 * 109.47036 * 209.99785 * 3 2 1 33 33 H 1.08997 * 109.46801 * 330.00049 * 3 2 1 34 34 H 1.09003 * 109.46985 * 60.00378 * 5 4 3 35 35 H 1.09007 * 109.46898 * 179.97438 * 5 4 3 36 36 H 1.08991 * 109.47188 * 299.99962 * 5 4 3 37 37 H 1.08999 * 109.47089 * 60.00008 * 6 4 3 38 38 H 1.09000 * 109.46579 * 180.02562 * 6 4 3 39 39 H 1.08996 * 109.46972 * 299.99735 * 6 4 3 40 40 H 1.08998 * 109.47553 * 299.99845 * 7 4 3 41 41 H 1.09001 * 109.47099 * 60.00852 * 7 4 3 42 42 H 0.97001 * 120.00019 * 0.02562 * 8 7 4 43 43 H 0.96995 * 119.99982 * 180.02562 * 12 11 9 44 44 H 1.07992 * 119.66602 * 359.97438 * 20 19 17 45 45 H 1.08006 * 119.36038 * 180.28594 * 21 20 19 46 46 H 1.08000 * 120.00525 * 179.69695 * 22 21 20 47 47 H 1.08000 * 120.05748 * 0.02562 * 24 23 22 48 48 H 1.07996 * 119.08414 * 180.02562 * 26 25 24 49 49 H 1.08001 * 120.65158 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7105 1.4425 5 6 1.1156 1.8935 2.1637 6 6 3.2794 0.6441 2.1638 7 6 3.2181 3.0351 1.4424 8 7 3.4627 3.4578 2.8237 9 6 4.1360 4.6237 3.0739 10 1 4.4870 5.2314 2.2530 11 6 4.3682 5.0239 4.3826 12 7 3.9408 4.2830 5.3831 13 14 5.2872 6.6139 4.7239 14 1 4.5446 7.7529 4.1268 15 1 5.4041 6.8131 6.1908 16 1 6.6443 6.5396 4.1253 17 6 2.1389 -1.1673 0.0005 18 8 3.3512 -1.1694 0.0950 19 6 1.4061 -2.4417 -0.1138 20 6 0.3807 -2.5835 -1.0394 21 6 -0.3087 -3.7839 -1.1549 22 6 -0.0101 -4.8510 -0.3600 23 6 1.0153 -4.7503 0.5936 24 6 1.3569 -5.8230 1.4338 25 7 2.3228 -5.6841 2.3120 26 6 3.0092 -4.5586 2.4504 27 6 2.7535 -3.4616 1.6825 28 6 1.7343 -3.5348 0.7212 29 1 -0.3633 0.0283 -1.0273 30 1 -0.3634 -0.9038 0.4891 31 1 -0.3633 0.8755 0.5381 32 1 3.1500 1.1383 -0.5138 33 1 1.6085 2.0283 -0.5138 34 1 0.5706 0.9495 2.1638 35 1 1.2973 2.2078 3.1915 36 1 0.5266 2.6530 1.6498 37 1 4.2318 0.5137 1.6500 38 1 3.4606 0.9586 3.1916 39 1 2.7343 -0.2998 2.1639 40 1 4.1705 2.9043 0.9288 41 1 2.6293 3.7949 0.9285 42 1 3.1477 2.9118 3.5610 43 1 4.1028 4.5629 6.2975 44 1 0.1192 -1.7534 -1.6788 45 1 -1.0995 -3.8723 -1.8852 46 1 -0.5626 -5.7731 -0.4639 47 1 0.8259 -6.7603 1.3575 48 1 3.7927 -4.5094 3.1921 49 1 3.3249 -2.5542 1.8111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282336027.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:22:48 Heat of formation + Delta-G solvation = 17.801094 kcal Electronic energy + Delta-G solvation = -30098.490254 eV Core-core repulsion = 26218.182917 eV Total energy + Delta-G solvation = -3880.307337 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20471 -40.95210 -38.83147 -38.07666 -36.47909 -34.96063 -33.93094 -32.44597 -32.00916 -30.79792 -28.94089 -28.19956 -27.33681 -27.01370 -25.33676 -24.79765 -24.43176 -23.53382 -20.78107 -19.87494 -19.18288 -19.13725 -18.42294 -17.80187 -17.43734 -17.03132 -16.82969 -16.52044 -15.83579 -15.62274 -15.45201 -15.34407 -15.20070 -14.97388 -14.72023 -14.43953 -14.34389 -14.14638 -13.88066 -13.75302 -13.61636 -13.34630 -13.00179 -12.96226 -12.85259 -12.70933 -12.59948 -12.52040 -12.36992 -12.27975 -12.15925 -11.69275 -11.66047 -11.51568 -11.24857 -10.93911 -10.86450 -10.49603 -10.09755 -9.63509 -9.09849 -8.98525 -7.95228 -5.23347 -0.81218 -0.13741 0.65521 1.44814 1.48658 1.54561 1.63245 1.92306 2.16302 2.55670 3.04758 3.35314 3.37839 3.46343 3.65863 3.77488 3.81653 3.83441 3.90155 3.93725 3.94968 4.18940 4.24146 4.30605 4.37610 4.43327 4.47560 4.59077 4.63146 4.72320 4.74992 4.79045 4.80027 4.87890 4.89161 4.90749 4.94549 5.08387 5.12582 5.13977 5.16327 5.29293 5.35399 5.41162 5.47065 5.51115 5.53434 5.61454 5.80245 6.26873 6.34372 6.93469 7.10302 7.33200 8.10584 8.34044 9.28459 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.002626 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.206464 B =10660.852064 C =11642.803378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.598 5.598 3 C 0.137 3.863 4 C -0.077 4.077 5 C -0.126 4.126 6 C -0.106 4.106 7 C 0.164 3.836 8 N -0.740 5.740 9 C -0.244 4.244 10 H 0.075 0.925 11 C -0.078 4.078 12 N -0.971 5.971 13 Si 0.975 3.025 14 H -0.274 1.274 15 H -0.296 1.296 16 H -0.281 1.281 17 C 0.552 3.448 18 O -0.566 6.566 19 C -0.153 4.153 20 C -0.042 4.042 21 C -0.125 4.125 22 C -0.048 4.048 23 C -0.133 4.133 24 C 0.153 3.847 25 N -0.515 5.515 26 C 0.070 3.930 27 C -0.174 4.174 28 C -0.008 4.008 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.025 0.975 39 H 0.045 0.955 40 H 0.009 0.991 41 H 0.032 0.968 42 H 0.375 0.625 43 H 0.250 0.750 44 H 0.159 0.841 45 H 0.176 0.824 46 H 0.180 0.820 47 H 0.206 0.794 48 H 0.157 0.843 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.178 -20.881 -18.110 32.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.328 5.328 3 C 0.013 3.987 4 C -0.078 4.078 5 C -0.183 4.183 6 C -0.163 4.163 7 C 0.037 3.963 8 N -0.383 5.383 9 C -0.376 4.376 10 H 0.093 0.907 11 C -0.270 4.270 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.200 1.200 15 H -0.222 1.222 16 H -0.207 1.207 17 C 0.342 3.658 18 O -0.446 6.446 19 C -0.156 4.156 20 C -0.061 4.061 21 C -0.143 4.143 22 C -0.068 4.068 23 C -0.135 4.135 24 C -0.019 4.019 25 N -0.223 5.223 26 C -0.072 4.072 27 C -0.194 4.194 28 C -0.014 4.014 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.050 0.950 42 H 0.208 0.792 43 H 0.059 0.941 44 H 0.177 0.823 45 H 0.194 0.806 46 H 0.197 0.803 47 H 0.223 0.777 48 H 0.174 0.826 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.132 -21.301 -17.497 31.939 hybrid contribution 1.126 1.759 0.776 2.228 sum -15.005 -19.542 -16.721 29.777 Atomic orbital electron populations 1.22411 0.77135 1.04489 1.04064 1.47731 1.08371 1.04738 1.71996 1.21409 0.97752 0.84903 0.94591 1.21026 0.96022 0.94285 0.96513 1.21795 0.95490 1.01477 0.99548 1.21556 0.98932 0.97230 0.98613 1.20729 0.95903 0.93408 0.86249 1.42586 1.67875 1.25088 1.02779 1.19625 1.27084 0.98880 0.92023 0.90703 1.25575 1.03368 1.02518 0.95493 1.69826 1.53400 1.40812 0.98203 0.85189 0.78571 0.79666 0.76200 1.20023 1.22194 1.20711 1.18537 0.86853 0.84392 0.76055 1.90808 1.15600 1.87624 1.50592 1.19777 1.00722 0.93075 1.02013 1.21958 0.90273 0.99763 0.94149 1.21330 1.00915 0.91481 1.00530 1.21663 0.93091 1.00976 0.91049 1.19289 0.99518 0.93864 1.00823 1.23972 0.91481 0.98506 0.87924 1.67490 1.07943 1.25683 1.21170 1.22345 0.98355 0.88316 0.98172 1.22058 0.99008 1.00909 0.97453 1.18105 0.94872 0.93729 0.94690 0.89030 0.90432 0.89594 0.91381 0.87131 0.91430 0.95197 0.91222 0.94437 0.95613 0.93651 0.97321 0.95001 0.79180 0.94083 0.82346 0.80629 0.80279 0.77712 0.82596 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.78 7.96 127.77 1.02 1.80 16 2 N -0.60 -13.18 2.40 -850.63 -2.04 -15.22 16 3 C 0.14 3.54 4.60 86.38 0.40 3.94 16 4 C -0.08 -2.60 0.60 -52.18 -0.03 -2.63 16 5 C -0.13 -3.91 7.05 71.98 0.51 -3.41 16 6 C -0.11 -4.17 6.89 71.99 0.50 -3.68 16 7 C 0.16 6.83 5.15 86.38 0.44 7.28 16 8 N -0.74 -39.16 5.01 -343.46 -1.72 -40.88 16 9 C -0.24 -14.14 9.99 84.03 0.84 -13.30 16 10 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 11 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 12 N -0.97 -61.52 13.06 21.65 0.28 -61.24 16 13 Si 0.98 47.57 29.55 68.60 2.03 49.60 16 14 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 15 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 16 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 17 C 0.55 15.00 5.39 86.67 0.47 15.47 16 18 O -0.57 -20.43 12.53 -4.05 -0.05 -20.48 16 19 C -0.15 -3.29 4.87 -19.92 -0.10 -3.39 16 20 C -0.04 -0.50 7.83 22.58 0.18 -0.32 16 21 C -0.13 -0.81 9.92 21.99 0.22 -0.60 16 22 C -0.05 -0.38 9.79 22.36 0.22 -0.16 16 23 C -0.13 -2.25 5.74 -21.33 -0.12 -2.37 16 24 C 0.15 2.54 11.05 85.32 0.94 3.48 16 25 N -0.51 -12.26 10.30 -195.40 -2.01 -14.27 16 26 C 0.07 1.86 11.07 84.14 0.93 2.79 16 27 C -0.17 -5.04 9.23 22.32 0.21 -4.84 16 28 C -0.01 -0.20 5.76 -21.12 -0.12 -0.32 16 29 H 0.09 0.58 7.14 -2.39 -0.02 0.57 16 30 H 0.08 0.96 6.29 -2.39 -0.02 0.94 16 31 H 0.09 1.10 5.98 -2.39 -0.01 1.09 16 32 H 0.07 2.03 7.50 -2.39 -0.02 2.01 16 33 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 34 H 0.07 1.78 5.96 -2.39 -0.01 1.76 16 35 H 0.03 1.15 6.86 -2.38 -0.02 1.14 16 36 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 37 H 0.04 1.59 7.63 -2.39 -0.02 1.57 16 38 H 0.02 1.15 6.86 -2.39 -0.02 1.13 16 39 H 0.04 1.68 5.90 -2.39 -0.01 1.67 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.37 21.22 5.36 -92.71 -0.50 20.72 16 43 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.16 1.08 6.35 -2.91 -0.02 1.06 16 45 H 0.18 -0.23 8.06 -2.91 -0.02 -0.25 16 46 H 0.18 -0.09 8.06 -2.91 -0.02 -0.12 16 47 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 49 H 0.12 4.12 6.06 -2.91 -0.02 4.10 16 Total: -1.00 -82.34 381.26 3.92 -78.41 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.48 Total: 28.48 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.96 Total: -4.40 kcal Atomic # 7 Polarization: -126.12 SS G_CDS: -5.49 Total: -131.61 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.05 Total: -20.48 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.03 Total: 49.60 kcal Total: -82.34 3.92 -78.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282336027.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.214 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds