Wall clock time and date at job start Wed Apr 1 2020 01:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 H 1.08994 * 109.47003 * 55.00370 * 3 2 1 5 5 F 1.39895 * 109.47083 * 294.99561 * 3 2 1 6 6 C 1.50699 * 109.46898 * 175.00173 * 3 2 1 7 7 O 1.21288 * 119.99981 * 44.99212 * 6 3 2 8 8 N 1.34779 * 120.00123 * 225.00218 * 6 3 2 9 9 C 1.46496 * 120.00124 * 180.02562 * 8 6 3 10 10 C 1.54113 * 112.36492 * 61.89740 * 9 8 6 11 11 C 1.54891 * 104.15626 * 98.09999 * 10 9 8 12 12 C 1.54826 * 102.73487 * 38.45993 * 11 10 9 13 13 C 1.54266 * 104.42846 * 322.19784 * 12 11 10 14 14 H 1.08998 * 111.87975 * 260.93717 * 13 12 11 15 15 N 1.47926 * 108.71510 * 137.55136 * 13 12 11 16 16 C 1.46896 * 110.99877 * 99.94593 * 15 13 12 17 17 C 1.50701 * 109.46946 * 187.48935 * 16 15 13 18 18 O 1.21293 * 120.00278 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00078 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99959 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00408 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99816 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00126 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99915 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00007 * 24 22 20 28 28 C 1.48478 * 105.99335 * 220.56785 * 15 13 12 29 29 C 1.54451 * 111.71684 * 298.98033 * 9 8 6 30 30 H 1.09008 * 109.47060 * 299.99926 * 1 2 3 31 31 H 1.08995 * 109.47148 * 60.00123 * 1 2 3 32 32 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47168 * 240.00021 * 2 1 3 34 34 H 1.08995 * 109.47148 * 119.99877 * 2 1 3 35 35 H 0.97000 * 119.99643 * 359.97438 * 8 6 3 36 36 H 1.09002 * 110.49668 * 216.77130 * 10 9 8 37 37 H 1.08997 * 110.49013 * 339.43849 * 10 9 8 38 38 H 1.08998 * 110.75719 * 280.14932 * 11 10 9 39 39 H 1.09002 * 110.75426 * 156.76769 * 11 10 9 40 40 H 1.09001 * 110.43690 * 203.46481 * 12 11 10 41 41 H 1.08995 * 110.44376 * 80.93521 * 12 11 10 42 42 H 1.08994 * 109.47346 * 67.48837 * 16 15 13 43 43 H 1.09006 * 109.47133 * 307.48230 * 16 15 13 44 44 H 0.97000 * 119.99555 * 359.97438 * 19 17 16 45 45 H 0.96996 * 120.00340 * 359.97438 * 23 22 20 46 46 H 1.08996 * 110.67131 * 157.64560 * 28 15 13 47 47 H 1.09004 * 110.66532 * 280.77762 * 28 15 13 48 48 H 1.09002 * 110.72135 * 142.65729 * 29 9 8 49 49 H 1.09002 * 110.86777 * 19.45895 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4444 0.1238 7 8 4.2064 0.6810 -0.5446 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2963 1.0973 10 6 6.3032 2.6720 -0.2251 11 6 6.6289 4.1780 -0.0672 12 6 7.0446 4.2831 1.4206 13 6 6.0943 3.3146 2.1545 14 1 5.2580 3.8387 2.6171 15 7 6.8729 2.5533 3.1558 16 6 6.6968 3.1185 4.5001 17 6 7.6407 2.4389 5.4583 18 8 8.3864 1.5689 5.0606 19 7 7.6556 2.7970 6.7576 20 6 8.5140 2.1784 7.6294 21 1 9.1779 1.4038 7.2752 22 6 8.5297 2.5480 8.9687 23 7 7.7221 3.4910 9.3996 24 14 9.6987 1.7046 10.1568 25 1 9.5213 2.2765 11.5157 26 1 9.4059 0.2491 10.1897 27 1 11.0985 1.9180 9.7093 28 6 6.3662 1.1591 3.0941 29 6 6.1427 0.9300 1.5783 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.6152 2.9048 1.5118 36 1 7.2190 2.0946 -0.3516 37 1 5.6313 2.5134 -1.0686 38 1 5.7470 4.7869 -0.2658 39 1 7.4533 4.4654 -0.7198 40 1 6.9053 5.3013 1.7837 41 1 8.0808 3.9703 1.5493 42 1 5.6696 2.9610 4.8289 43 1 6.9108 4.1871 4.4759 44 1 7.0590 3.4926 7.0757 45 1 7.1154 3.9292 8.7827 46 1 7.1086 0.4623 3.4832 47 1 5.4271 1.0666 3.6398 48 1 7.0825 0.6879 1.0821 49 1 5.4065 0.1436 1.4115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284065876.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:39 Heat of formation + Delta-G solvation = -118.793382 kcal Electronic energy + Delta-G solvation = -30945.797101 eV Core-core repulsion = 26628.797358 eV Total energy + Delta-G solvation = -4316.999742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.25592 -41.03820 -39.11566 -38.07040 -35.19951 -34.39122 -34.14158 -34.00883 -31.58145 -30.97030 -28.40450 -28.33289 -26.44160 -25.63919 -23.87059 -22.97809 -21.74706 -20.90751 -20.21207 -19.66374 -19.57173 -18.02710 -17.92384 -17.28797 -16.60033 -16.15635 -16.10239 -15.44426 -15.22917 -15.00063 -14.82908 -14.43407 -14.29181 -14.03172 -13.88649 -13.88233 -13.64482 -13.33563 -13.03463 -12.79431 -12.70461 -12.35798 -12.18525 -12.04103 -11.69158 -11.53597 -11.42037 -11.30850 -11.22009 -11.16913 -11.07497 -11.00827 -10.89137 -10.83846 -10.57011 -10.21890 -9.94971 -9.87233 -9.54622 -9.30425 -8.58013 -8.12574 -8.03229 -6.76574 -3.89719 2.09939 2.56817 3.29919 3.33925 3.54015 3.81512 3.85770 4.00178 4.04338 4.15229 4.21918 4.31083 4.40159 4.47497 4.69519 4.88458 4.90962 4.99105 5.10370 5.13186 5.14630 5.18803 5.20926 5.24618 5.37962 5.48278 5.50481 5.55538 5.61586 5.64906 5.65665 5.77028 5.79118 5.82631 5.92248 5.95194 5.98775 6.05008 6.12010 6.26789 6.37077 6.40082 6.98978 7.08176 7.13904 7.75986 7.79396 8.06853 8.58903 8.79342 9.46282 9.87311 10.66908 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.002469 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.523099 B =11339.649847 C =12234.550894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.098 0.902 5 F -0.190 7.190 6 C 0.493 3.507 7 O -0.511 6.511 8 N -0.706 5.706 9 C 0.162 3.838 10 C -0.115 4.115 11 C -0.124 4.124 12 C -0.109 4.109 13 C 0.061 3.939 14 H 0.062 0.938 15 N -0.480 5.480 16 C 0.036 3.964 17 C 0.448 3.552 18 O -0.569 6.569 19 N -0.577 5.577 20 C -0.380 4.380 21 H 0.099 0.901 22 C -0.010 4.010 23 N -0.902 5.902 24 Si 1.091 2.909 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.039 3.961 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.375 0.625 45 H 0.260 0.740 46 H 0.102 0.898 47 H 0.036 0.964 48 H 0.086 0.914 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.933 0.730 -18.045 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.043 3.957 4 H 0.116 0.884 5 F -0.171 7.171 6 C 0.276 3.724 7 O -0.385 6.385 8 N -0.358 5.358 9 C 0.075 3.925 10 C -0.154 4.154 11 C -0.162 4.162 12 C -0.147 4.147 13 C -0.048 4.048 14 H 0.080 0.920 15 N -0.204 5.204 16 C -0.096 4.096 17 C 0.234 3.766 18 O -0.452 6.452 19 N -0.216 5.216 20 C -0.510 4.510 21 H 0.117 0.883 22 C -0.212 4.212 23 N -0.542 5.542 24 Si 0.917 3.083 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.210 1.210 28 C -0.088 4.088 29 C -0.157 4.157 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.235 0.765 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.106 0.894 44 H 0.207 0.793 45 H 0.072 0.928 46 H 0.121 0.879 47 H 0.054 0.946 48 H 0.104 0.896 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.866 -0.440 -17.310 20.991 hybrid contribution -2.158 0.956 -0.873 2.517 sum -14.024 0.516 -18.182 22.968 Atomic orbital electron populations 1.21777 0.94078 1.02763 1.02480 1.21993 0.97328 0.93413 1.05185 1.21651 0.92110 0.96424 0.85505 0.88409 1.92883 1.92049 1.83904 1.48269 1.20916 0.90174 0.80973 0.80332 1.90749 1.65868 1.38657 1.43222 1.46122 1.07420 1.39306 1.42973 1.21634 0.78395 0.96409 0.96014 1.22632 1.00572 0.96255 0.95937 1.22538 1.00948 0.96067 0.96661 1.22372 1.00730 0.97907 0.93714 1.23258 0.94997 0.94170 0.92403 0.91971 1.64663 1.50572 1.01780 1.03348 1.22085 0.97930 0.99922 0.89647 1.19582 0.87395 0.86987 0.82681 1.90517 1.43775 1.33964 1.76947 1.41931 1.36594 1.35808 1.07267 1.20514 1.18363 1.20739 0.91336 0.88348 1.26496 1.00709 0.97447 0.96553 1.70906 1.21941 1.23546 1.37765 0.83140 0.74668 0.75311 0.75224 1.20427 1.21036 1.20980 1.23353 0.98892 0.91355 0.95194 1.22884 1.01758 0.95472 0.95626 0.92312 0.91932 0.91607 0.89350 0.89694 0.76470 0.90006 0.91031 0.91882 0.91136 0.91645 0.89339 0.93507 0.89371 0.79266 0.92826 0.87944 0.94609 0.89570 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.83 37.16 0.37 -0.54 16 2 C -0.14 -1.05 5.41 -26.73 -0.14 -1.20 16 3 C 0.08 0.66 3.77 -27.88 -0.11 0.56 16 4 H 0.10 0.49 7.99 -51.93 -0.42 0.08 16 5 F -0.19 -1.91 16.75 2.25 0.04 -1.87 16 6 C 0.49 5.20 6.23 -10.98 -0.07 5.13 16 7 O -0.51 -7.13 14.14 5.55 0.08 -7.06 16 8 N -0.71 -6.66 5.26 -45.56 -0.24 -6.90 16 9 C 0.16 1.86 0.83 -129.60 -0.11 1.75 16 10 C -0.12 -1.31 5.67 -25.15 -0.14 -1.46 16 11 C -0.12 -1.22 6.90 -24.77 -0.17 -1.39 16 12 C -0.11 -1.22 6.51 -25.11 -0.16 -1.38 16 13 C 0.06 0.73 3.07 -65.61 -0.20 0.53 16 14 H 0.06 0.65 7.35 -51.93 -0.38 0.27 16 15 N -0.48 -7.58 4.42 -222.84 -0.98 -8.57 16 16 C 0.04 0.61 5.21 -4.98 -0.03 0.59 16 17 C 0.45 10.37 7.59 -10.98 -0.08 10.29 16 18 O -0.57 -15.23 14.42 5.55 0.08 -15.15 16 19 N -0.58 -14.32 5.28 -10.97 -0.06 -14.38 16 20 C -0.38 -10.59 9.68 -14.93 -0.14 -10.74 16 21 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 22 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 23 N -0.90 -25.08 13.68 55.50 0.76 -24.32 16 24 Si 1.09 24.16 29.92 -169.99 -5.09 19.07 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 28 C 0.04 0.62 5.86 -1.94 -0.01 0.61 16 29 C -0.12 -1.61 5.83 -24.96 -0.15 -1.75 16 30 H 0.06 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.39 7.93 -51.93 -0.41 -0.02 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.40 2.73 8.17 -40.82 -0.33 2.39 16 36 H 0.08 0.98 7.22 -51.93 -0.37 0.61 16 37 H 0.07 0.88 6.80 -51.93 -0.35 0.53 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.16 7.97 -51.93 -0.41 0.75 16 42 H 0.05 0.72 7.90 -51.93 -0.41 0.31 16 43 H 0.09 1.35 8.11 -51.93 -0.42 0.93 16 44 H 0.37 8.56 6.73 -40.82 -0.27 8.28 16 45 H 0.26 6.94 6.78 -40.82 -0.28 6.66 16 46 H 0.10 1.95 6.91 -51.93 -0.36 1.59 16 47 H 0.04 0.54 7.85 -51.93 -0.41 0.14 16 48 H 0.09 1.22 7.22 -51.93 -0.37 0.84 16 49 H 0.08 1.04 6.74 -51.93 -0.35 0.69 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -33.76 388.81 -8.48 -42.24 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -7.68 Total: 10.43 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -1.25 Total: 0.64 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.52 Total: -54.16 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: 0.16 Total: -22.21 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.09 Total: 19.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.76 -8.48 -42.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284065876.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.550 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds