Wall clock time and date at job start Wed Apr 1 2020 01:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 H 1.08994 * 109.47003 * 55.00370 * 3 2 1 5 5 F 1.39895 * 109.47083 * 294.99561 * 3 2 1 6 6 C 1.50699 * 109.46898 * 175.00173 * 3 2 1 7 7 O 1.21288 * 119.99981 * 44.99212 * 6 3 2 8 8 N 1.34779 * 120.00123 * 225.00218 * 6 3 2 9 9 C 1.46496 * 120.00124 * 180.02562 * 8 6 3 10 10 C 1.54113 * 112.36492 * 61.89740 * 9 8 6 11 11 C 1.54891 * 104.15626 * 98.09999 * 10 9 8 12 12 C 1.54826 * 102.73487 * 38.45993 * 11 10 9 13 13 C 1.54266 * 104.42846 * 322.19784 * 12 11 10 14 14 H 1.08998 * 111.87975 * 260.93717 * 13 12 11 15 15 N 1.47926 * 108.71510 * 137.55136 * 13 12 11 16 16 C 1.46896 * 110.99877 * 99.94593 * 15 13 12 17 17 C 1.50701 * 109.46946 * 187.48935 * 16 15 13 18 18 O 1.21293 * 120.00278 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00078 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99959 * 179.97438 * 19 17 16 21 21 H 1.07991 * 120.00408 * 359.97438 * 20 19 17 22 22 C 1.38950 * 119.99816 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99922 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00126 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99915 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00007 * 24 22 20 28 28 C 1.48478 * 105.99335 * 220.56785 * 15 13 12 29 29 C 1.54451 * 111.71684 * 298.98033 * 9 8 6 30 30 H 1.09008 * 109.47060 * 299.99926 * 1 2 3 31 31 H 1.08995 * 109.47148 * 60.00123 * 1 2 3 32 32 H 1.08997 * 109.46806 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47168 * 240.00021 * 2 1 3 34 34 H 1.08995 * 109.47148 * 119.99877 * 2 1 3 35 35 H 0.97000 * 119.99643 * 359.97438 * 8 6 3 36 36 H 1.09002 * 110.49668 * 216.77130 * 10 9 8 37 37 H 1.08997 * 110.49013 * 339.43849 * 10 9 8 38 38 H 1.08998 * 110.75719 * 280.14932 * 11 10 9 39 39 H 1.09002 * 110.75426 * 156.76769 * 11 10 9 40 40 H 1.09001 * 110.43690 * 203.46481 * 12 11 10 41 41 H 1.08995 * 110.44376 * 80.93521 * 12 11 10 42 42 H 1.08994 * 109.47346 * 67.48837 * 16 15 13 43 43 H 1.09006 * 109.47133 * 307.48230 * 16 15 13 44 44 H 0.97000 * 119.99555 * 359.97438 * 19 17 16 45 45 H 0.96996 * 120.00340 * 359.97438 * 23 22 20 46 46 H 1.08996 * 110.67131 * 157.64560 * 28 15 13 47 47 H 1.09004 * 110.66532 * 280.77762 * 28 15 13 48 48 H 1.09002 * 110.72135 * 142.65729 * 29 9 8 49 49 H 1.09002 * 110.86777 * 19.45895 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 9 1.6699 2.0680 -1.1954 6 6 3.5419 1.4444 0.1238 7 8 4.2064 0.6810 -0.5446 8 7 4.1467 2.2941 0.9774 9 6 5.6067 2.2963 1.0973 10 6 6.3032 2.6720 -0.2251 11 6 6.6289 4.1780 -0.0672 12 6 7.0446 4.2831 1.4206 13 6 6.0943 3.3146 2.1545 14 1 5.2580 3.8387 2.6171 15 7 6.8729 2.5533 3.1558 16 6 6.6968 3.1185 4.5001 17 6 7.6407 2.4389 5.4583 18 8 8.3864 1.5689 5.0606 19 7 7.6556 2.7970 6.7576 20 6 8.5140 2.1784 7.6294 21 1 9.1779 1.4038 7.2752 22 6 8.5297 2.5480 8.9687 23 7 7.7221 3.4910 9.3996 24 14 9.6987 1.7046 10.1568 25 1 9.5213 2.2765 11.5157 26 1 9.4059 0.2491 10.1897 27 1 11.0985 1.9180 9.7093 28 6 6.3662 1.1591 3.0941 29 6 6.1427 0.9300 1.5783 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.6152 2.9048 1.5118 36 1 7.2190 2.0946 -0.3516 37 1 5.6313 2.5134 -1.0686 38 1 5.7470 4.7869 -0.2658 39 1 7.4533 4.4654 -0.7198 40 1 6.9053 5.3013 1.7837 41 1 8.0808 3.9703 1.5493 42 1 5.6696 2.9610 4.8289 43 1 6.9108 4.1871 4.4759 44 1 7.0590 3.4926 7.0757 45 1 7.1154 3.9292 8.7827 46 1 7.1086 0.4623 3.4832 47 1 5.4271 1.0666 3.6398 48 1 7.0825 0.6879 1.0821 49 1 5.4065 0.1436 1.4115 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284065876.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:38 Heat of formation + Delta-G solvation = -143.171654 kcal Electronic energy + Delta-G solvation = -30946.854222 eV Core-core repulsion = 26628.797358 eV Total energy + Delta-G solvation = -4318.056863 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.95972 -42.03269 -40.41805 -39.57356 -36.63137 -35.88688 -35.04963 -34.83719 -33.21801 -32.47409 -29.59046 -29.08529 -27.34891 -27.15029 -25.59143 -23.74049 -22.68086 -21.91181 -21.43233 -20.96883 -20.57664 -19.94936 -18.91498 -18.24256 -17.78981 -17.35817 -16.94923 -16.65421 -16.48172 -16.28572 -15.99126 -15.65257 -15.43751 -15.30052 -15.14377 -14.92843 -14.73716 -14.44848 -14.19601 -13.93151 -13.51062 -13.35536 -13.32478 -13.04526 -12.93089 -12.86128 -12.70347 -12.55092 -12.23292 -12.06239 -12.03948 -12.00652 -11.92496 -11.88386 -11.87018 -11.80916 -11.51191 -11.47051 -10.81019 -10.38825 -10.19036 -10.08799 -9.43435 -8.91385 -6.05062 1.27805 1.52681 1.54348 1.76452 1.82123 2.02505 2.39194 2.69015 3.03408 3.17265 3.29137 3.33902 3.47211 3.49580 3.65316 3.72431 3.87671 4.03695 4.08708 4.14990 4.18929 4.25618 4.32587 4.33910 4.38123 4.44886 4.47620 4.59678 4.69045 4.70704 4.71683 4.85863 4.93832 4.97508 5.01807 5.07747 5.11579 5.13651 5.19049 5.31128 5.34241 5.47607 5.60579 5.79732 5.97033 6.02117 6.31746 6.59629 6.77274 6.99414 7.46051 7.96134 8.56724 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.016074 B = 0.002469 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.523099 B =11339.649847 C =12234.550894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.142 4.142 3 C 0.086 3.914 4 H 0.138 0.862 5 F -0.201 7.201 6 C 0.490 3.510 7 O -0.551 6.551 8 N -0.694 5.694 9 C 0.169 3.831 10 C -0.115 4.115 11 C -0.113 4.113 12 C -0.108 4.108 13 C 0.065 3.935 14 H 0.093 0.907 15 N -0.501 5.501 16 C 0.049 3.951 17 C 0.446 3.554 18 O -0.611 6.611 19 N -0.588 5.588 20 C -0.407 4.407 21 H 0.070 0.930 22 C -0.042 4.042 23 N -0.918 5.918 24 Si 1.131 2.869 25 H -0.272 1.272 26 H -0.274 1.274 27 H -0.274 1.274 28 C 0.044 3.956 29 C -0.111 4.111 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.384 0.616 45 H 0.260 0.740 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.071 0.929 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.923 2.525 -18.083 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.047 3.953 4 H 0.156 0.844 5 F -0.182 7.182 6 C 0.275 3.725 7 O -0.428 6.428 8 N -0.347 5.347 9 C 0.082 3.918 10 C -0.154 4.154 11 C -0.151 4.151 12 C -0.146 4.146 13 C -0.043 4.043 14 H 0.110 0.890 15 N -0.225 5.225 16 C -0.082 4.082 17 C 0.234 3.766 18 O -0.496 6.496 19 N -0.228 5.228 20 C -0.536 4.536 21 H 0.088 0.912 22 C -0.240 4.240 23 N -0.557 5.557 24 Si 0.951 3.049 25 H -0.197 1.197 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.084 4.084 29 C -0.150 4.150 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.219 0.781 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.089 0.911 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.902 1.398 -17.358 22.283 hybrid contribution -1.525 0.350 -0.952 1.832 sum -15.427 1.748 -18.310 24.006 Atomic orbital electron populations 1.21763 0.92622 1.03325 1.03005 1.21997 0.98516 0.93053 1.04413 1.21817 0.90129 0.97196 0.86197 0.84439 1.92863 1.91936 1.84107 1.49296 1.21442 0.91288 0.80197 0.79586 1.90740 1.67010 1.40252 1.44789 1.45972 1.06520 1.39325 1.42854 1.21445 0.79695 0.94728 0.95958 1.22578 0.99733 0.97602 0.95457 1.22493 1.01996 0.94709 0.95859 1.22358 0.99118 0.98571 0.94557 1.23352 0.95715 0.93917 0.91363 0.88960 1.64580 1.52448 1.02034 1.03464 1.21966 0.97259 1.00312 0.88683 1.20759 0.87131 0.85948 0.82798 1.90502 1.45606 1.35752 1.77715 1.41974 1.36756 1.36299 1.07780 1.20465 1.19401 1.21224 0.92537 0.91152 1.27739 1.01311 0.97262 0.97676 1.70970 1.22575 1.24187 1.37988 0.82657 0.73470 0.75049 0.73713 1.19674 1.19944 1.19977 1.23167 0.97787 0.90984 0.96438 1.22757 1.01184 0.96977 0.94093 0.90758 0.92364 0.91123 0.91409 0.89311 0.74426 0.91474 0.91891 0.90014 0.90372 0.89630 0.91772 0.90771 0.86766 0.78149 0.92921 0.92190 0.93730 0.91052 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.83 71.98 0.71 -0.74 16 2 C -0.14 -1.91 5.41 30.60 0.17 -1.75 16 3 C 0.09 1.17 3.77 29.85 0.11 1.28 16 4 H 0.14 0.81 7.99 -2.39 -0.02 0.79 16 5 F -0.20 -3.65 16.75 44.97 0.75 -2.90 16 6 C 0.49 9.54 6.23 87.66 0.55 10.08 16 7 O -0.55 -15.30 14.14 -3.05 -0.04 -15.35 16 8 N -0.69 -11.21 5.26 -416.44 -2.19 -13.40 16 9 C 0.17 3.60 0.83 5.04 0.00 3.61 16 10 C -0.11 -2.50 5.67 31.62 0.18 -2.32 16 11 C -0.11 -1.91 6.90 31.86 0.22 -1.69 16 12 C -0.11 -2.12 6.51 31.65 0.21 -1.92 16 13 C 0.07 1.37 3.07 45.72 0.14 1.51 16 14 H 0.09 1.46 7.35 -2.39 -0.02 1.44 16 15 N -0.50 -15.24 4.42 -858.92 -3.79 -19.03 16 16 C 0.05 1.57 5.21 85.56 0.45 2.02 16 17 C 0.45 20.71 7.59 87.66 0.66 21.38 16 18 O -0.61 -33.75 14.42 -3.07 -0.04 -33.80 16 19 N -0.59 -29.33 5.28 -306.99 -1.62 -30.95 16 20 C -0.41 -23.10 9.68 84.04 0.81 -22.28 16 21 H 0.07 4.32 7.16 -2.91 -0.02 4.30 16 22 C -0.04 -2.25 5.50 84.93 0.47 -1.78 16 23 N -0.92 -50.59 13.68 21.66 0.30 -50.29 16 24 Si 1.13 48.42 29.92 68.60 2.05 50.47 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 28 C 0.04 1.40 5.86 86.65 0.51 1.90 16 29 C -0.11 -3.04 5.83 31.74 0.18 -2.86 16 30 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.62 7.93 -2.39 -0.02 0.60 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 1.19 8.05 -2.39 -0.02 1.17 16 34 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.42 3.91 8.17 -92.71 -0.76 3.15 16 36 H 0.07 1.64 7.22 -2.39 -0.02 1.62 16 37 H 0.06 1.50 6.80 -2.39 -0.02 1.48 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.06 1.61 7.97 -2.39 -0.02 1.59 16 42 H 0.07 2.01 7.90 -2.39 -0.02 1.99 16 43 H 0.11 3.11 8.11 -2.38 -0.02 3.09 16 44 H 0.38 17.40 6.73 -92.71 -0.62 16.77 16 45 H 0.26 13.74 6.78 -92.71 -0.63 13.11 16 46 H 0.06 2.41 6.91 -2.39 -0.02 2.40 16 47 H 0.04 1.31 7.85 -2.38 -0.02 1.29 16 48 H 0.07 2.14 7.22 -2.39 -0.02 2.12 16 49 H 0.07 2.02 6.74 -2.39 -0.02 2.01 16 Total: -1.00 -76.09 388.81 0.51 -75.58 By element: Atomic # 1 Polarization: 33.47 SS G_CDS: -0.26 Total: 33.21 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.37 Total: 6.45 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -7.31 Total: -113.67 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.09 Total: -49.14 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.75 Total: -2.90 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 2.05 Total: 50.47 kcal Total: -76.09 0.51 -75.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284065876.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.592 kcal (2) G-P(sol) polarization free energy of solvation -76.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds