Wall clock time and date at job start Wed Apr 1 2020 00:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34237 * 126.50635 * 2 1 4 4 N 1.36833 * 109.93156 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.06217 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47224 * 265.02660 * 5 4 3 7 7 O 1.21288 * 119.99892 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00330 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00602 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47422 * 179.97438 * 9 8 6 11 11 N 1.46504 * 109.47058 * 179.97438 * 10 9 8 12 12 C 1.36935 * 119.99937 * 270.00095 * 11 10 9 13 13 H 1.08003 * 119.99855 * 144.92770 * 12 11 10 14 14 C 1.38814 * 120.00273 * 324.92932 * 12 11 10 15 15 N 1.31620 * 119.99838 * 337.93463 * 14 12 11 16 16 Si 1.86801 * 120.00091 * 157.93681 * 14 12 11 17 17 H 1.48501 * 109.46754 * 89.99914 * 16 14 12 18 18 H 1.48495 * 109.46949 * 209.99670 * 16 14 12 19 19 H 1.48495 * 109.47225 * 330.00128 * 16 14 12 20 20 C 1.46494 * 119.99631 * 90.00309 * 11 10 9 21 21 C 1.53008 * 117.49603 * 183.23516 * 20 11 10 22 22 C 1.53005 * 117.50060 * 114.58020 * 20 11 10 23 23 C 1.37685 * 109.87321 * 0.26826 * 4 3 2 24 24 C 1.39126 * 133.49984 * 180.51793 * 23 4 3 25 25 C 1.37745 * 119.77976 * 179.57501 * 24 23 4 26 26 C 1.38834 * 120.66513 * 359.66562 * 25 24 23 27 27 C 1.36635 * 120.52634 * 0.02567 * 26 25 24 28 28 C 1.39620 * 119.76582 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47077 * 89.97463 * 1 2 3 30 30 H 1.08995 * 109.46946 * 209.97543 * 1 2 3 31 31 H 1.08998 * 109.46474 * 329.97584 * 1 2 3 32 32 H 1.07995 * 125.03098 * 359.97438 * 3 2 1 33 33 H 1.08992 * 109.47104 * 145.02512 * 5 4 3 34 34 H 1.09002 * 109.46959 * 25.02290 * 5 4 3 35 35 H 0.97000 * 119.99744 * 359.97438 * 8 6 5 36 36 H 1.09002 * 109.46594 * 59.99687 * 9 8 6 37 37 H 1.09002 * 109.46711 * 300.00837 * 9 8 6 38 38 H 1.09004 * 109.46724 * 60.00514 * 10 9 8 39 39 H 1.08991 * 109.47467 * 300.00375 * 10 9 8 40 40 H 0.96995 * 119.99672 * 176.06957 * 15 14 12 41 41 H 1.08998 * 115.55292 * 328.90743 * 20 11 10 42 42 H 1.09004 * 117.49709 * 0.02562 * 21 20 11 43 43 H 1.09001 * 117.49616 * 145.02232 * 21 20 11 44 44 H 1.08992 * 117.50031 * 214.97936 * 22 20 11 45 45 H 1.09007 * 117.49694 * 359.97438 * 22 20 11 46 46 H 1.08000 * 120.11030 * 359.25678 * 24 23 4 47 47 H 1.07997 * 119.67092 * 179.69352 * 25 24 23 48 48 H 1.07998 * 119.73813 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.11344 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6171 0.6886 -0.0006 5 6 4.7658 1.5979 -0.0002 6 6 5.2358 1.8141 -1.4156 7 8 4.6675 1.2625 -2.3342 8 7 6.2876 2.6203 -1.6607 9 6 6.7449 2.8300 -3.0366 10 6 7.9437 3.7807 -3.0364 11 7 8.4013 3.9899 -4.4123 12 6 9.3492 3.1620 -4.9519 13 1 9.3059 2.9019 -5.9992 14 6 10.3658 2.6570 -4.1528 15 7 10.6930 3.2730 -3.0366 16 14 11.2695 1.1034 -4.6617 17 1 12.4432 1.4645 -5.4968 18 1 11.7285 0.3783 -3.4499 19 1 10.3552 0.2324 -5.4432 20 6 7.8448 5.0848 -5.2107 21 6 8.3072 5.2050 -6.6643 22 6 8.7932 6.2134 -5.6203 23 6 3.6963 -0.6859 -0.0070 24 6 4.7589 -1.5840 -0.0011 25 6 4.5097 -2.9387 -0.0019 26 6 3.2071 -3.4190 -0.0015 27 6 2.1487 -2.5549 -0.0009 28 6 2.3783 -1.1777 -0.0001 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5142 32 1 1.9636 2.1034 -0.0004 33 1 5.5734 1.1627 0.5883 34 1 4.4728 2.5532 0.4352 35 1 6.7419 3.0617 -0.9261 36 1 5.9372 3.2645 -3.6256 37 1 7.0384 1.8746 -3.4716 38 1 8.7515 3.3465 -2.4472 39 1 7.6498 4.7359 -2.6016 40 1 11.3635 2.8897 -2.4498 41 1 6.8119 5.3517 -4.9874 42 1 9.0251 4.4691 -7.0265 43 1 7.5784 5.5513 -7.3972 44 1 8.3842 7.2226 -5.6668 45 1 9.8312 6.1414 -5.2953 46 1 5.7758 -1.2202 -0.0012 47 1 5.3358 -3.6342 -0.0024 48 1 3.0289 -4.4842 -0.0017 49 1 1.1381 -2.9358 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317557724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:04 Heat of formation + Delta-G solvation = 75.819165 kcal Electronic energy + Delta-G solvation = -28928.535149 eV Core-core repulsion = 25050.743665 eV Total energy + Delta-G solvation = -3877.791484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.46656 -39.28886 -37.22086 -36.94353 -34.86634 -33.79845 -33.29776 -31.08502 -30.42377 -29.88292 -28.73410 -27.48022 -25.38308 -24.30427 -22.74490 -21.98792 -21.51353 -21.27680 -20.38277 -19.80726 -19.53911 -17.40234 -16.99728 -16.62196 -16.22907 -15.60854 -15.46602 -15.32179 -15.12969 -14.66890 -14.45049 -14.09400 -13.91583 -13.80214 -13.43140 -13.25869 -13.10828 -12.81070 -12.69454 -12.65040 -12.15197 -12.11253 -11.99504 -11.63602 -11.52567 -11.41371 -11.10961 -10.81060 -10.79233 -10.77604 -10.40415 -10.20327 -9.96491 -9.81018 -9.70933 -9.45361 -9.34810 -8.70580 -8.56332 -8.14849 -7.54594 -6.71497 -5.92871 -3.52474 1.14652 1.64461 2.49661 2.69661 2.73816 3.27577 3.36335 3.41322 3.46372 3.95421 4.36511 4.54086 4.62298 4.71303 4.79375 4.86115 4.87103 4.96759 5.11669 5.20997 5.23068 5.23793 5.31814 5.52835 5.63440 5.70016 5.74209 5.83421 5.86853 5.92625 5.95249 6.00716 6.12231 6.16488 6.20720 6.41923 6.44144 6.50008 6.54104 6.62157 6.70936 6.75722 6.81168 6.89192 6.98617 7.15168 7.20640 7.24522 7.43063 7.69666 7.73063 8.33229 8.38171 9.01149 9.63834 10.18427 11.03898 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.002608 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.010954 B =10734.235924 C =12079.947561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.177 4.177 3 C 0.059 3.941 4 N -0.465 5.465 5 C 0.090 3.910 6 C 0.484 3.516 7 O -0.526 6.526 8 N -0.716 5.716 9 C 0.100 3.900 10 C 0.137 3.863 11 N -0.547 5.547 12 C -0.259 4.259 13 H 0.068 0.932 14 C 0.012 3.988 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.118 3.882 21 C -0.195 4.195 22 C -0.219 4.219 23 C 0.113 3.887 24 C -0.124 4.124 25 C -0.102 4.102 26 C -0.150 4.150 27 C -0.073 4.073 28 C -0.103 4.103 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.165 0.835 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.398 0.602 36 H 0.050 0.950 37 H 0.066 0.934 38 H 0.106 0.894 39 H 0.032 0.968 40 H 0.255 0.745 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.217 -4.152 10.971 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.184 4.184 3 C -0.065 4.065 4 N -0.148 5.148 5 C -0.036 4.036 6 C 0.267 3.733 7 O -0.401 6.401 8 N -0.368 5.368 9 C -0.025 4.025 10 C 0.010 3.990 11 N -0.264 5.264 12 C -0.388 4.388 13 H 0.086 0.914 14 C -0.189 4.189 15 N -0.526 5.526 16 Si 0.725 3.275 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.201 1.201 20 C 0.010 3.990 21 C -0.233 4.233 22 C -0.260 4.260 23 C 0.007 3.993 24 C -0.144 4.144 25 C -0.121 4.121 26 C -0.169 4.169 27 C -0.092 4.092 28 C -0.108 4.108 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.182 0.818 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.232 0.768 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.124 0.876 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.192 -4.332 10.396 18.911 hybrid contribution 1.023 -0.367 -0.056 1.088 sum -14.170 -4.699 10.339 18.159 Atomic orbital electron populations 1.20051 0.89566 1.01845 1.01564 1.20204 0.95066 0.90784 1.12366 1.21516 0.81577 0.99129 1.04272 1.43296 1.04979 1.03728 1.62762 1.21634 0.89734 0.95892 0.96345 1.20855 0.81278 0.80095 0.91067 1.90772 1.55892 1.47872 1.45608 1.46065 1.31831 1.47761 1.11166 1.22365 0.98194 1.02061 0.79890 1.21097 0.94680 0.95082 0.88184 1.43222 1.43287 1.29326 1.10555 1.19084 1.02380 1.21351 0.95975 0.91440 1.25117 0.95718 0.99713 0.98307 1.70027 1.32038 1.36566 1.14010 0.86413 0.79737 0.83528 0.77870 1.21090 1.21361 1.20146 1.21232 0.93953 0.91039 0.92816 1.23047 1.04226 1.03434 0.92604 1.23361 1.02299 0.93954 1.06416 1.18168 0.95468 0.82570 1.03068 1.20047 0.96655 0.92340 1.05381 1.20772 0.96974 0.94083 1.00266 1.20579 0.92482 0.99289 1.04582 1.20190 0.98847 0.90863 0.99260 1.19053 0.91819 0.93197 1.06708 0.91998 0.92056 0.92093 0.81800 0.86825 0.86362 0.76810 0.93142 0.91551 0.87627 0.94991 0.93485 0.89519 0.88392 0.90650 0.91142 0.88951 0.86577 0.85930 0.86286 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.41 36.01 0.37 -0.29 16 2 C -0.18 -2.20 6.32 -102.71 -0.65 -2.85 16 3 C 0.06 0.72 11.19 -16.73 -0.19 0.53 16 4 N -0.47 -6.13 2.27 -115.71 -0.26 -6.40 16 5 C 0.09 0.97 6.48 -5.19 -0.03 0.94 16 6 C 0.48 7.44 7.90 -10.99 -0.09 7.36 16 7 O -0.53 -10.75 16.42 5.55 0.09 -10.66 16 8 N -0.72 -10.74 5.56 -60.30 -0.33 -11.08 16 9 C 0.10 1.93 6.00 -4.04 -0.02 1.90 16 10 C 0.14 2.88 5.45 -4.04 -0.02 2.85 16 11 N -0.55 -12.86 2.78 -165.66 -0.46 -13.32 16 12 C -0.26 -6.70 8.63 -15.06 -0.13 -6.83 16 13 H 0.07 1.78 6.55 -52.48 -0.34 1.43 16 14 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 15 N -0.88 -23.71 11.33 55.49 0.63 -23.08 16 16 Si 0.90 20.94 29.61 -169.99 -5.03 15.91 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 C 0.12 2.45 6.56 -67.93 -0.45 2.01 16 21 C -0.19 -3.78 9.80 -26.69 -0.26 -4.04 16 22 C -0.22 -4.33 10.36 -26.69 -0.28 -4.61 16 23 C 0.11 1.66 6.80 -83.99 -0.57 1.08 16 24 C -0.12 -1.71 10.00 -39.43 -0.39 -2.11 16 25 C -0.10 -1.25 10.01 -39.54 -0.40 -1.64 16 26 C -0.15 -1.74 9.97 -39.94 -0.40 -2.14 16 27 C -0.07 -0.90 10.05 -39.65 -0.40 -1.30 16 28 C -0.10 -1.45 6.35 -105.14 -0.67 -2.12 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.12 0.85 8.12 -51.93 -0.42 0.43 16 35 H 0.40 4.72 8.47 -40.82 -0.35 4.38 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 38 H 0.11 2.49 5.35 -51.93 -0.28 2.21 16 39 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 40 H 0.26 6.62 8.32 -40.82 -0.34 6.29 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.10 2.07 6.37 -51.93 -0.33 1.74 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 46 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 49 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -32.78 409.48 -11.47 -44.25 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -7.62 Total: 9.23 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -4.65 Total: -11.03 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.43 Total: -53.87 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.78 -11.47 -44.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317557724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.067 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds