Wall clock time and date at job start Wed Apr 1 2020 00:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34237 * 126.50635 * 2 1 4 4 N 1.36833 * 109.93156 * 180.02562 * 3 2 1 5 5 C 1.46500 * 125.06217 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47224 * 265.02660 * 5 4 3 7 7 O 1.21288 * 119.99892 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00330 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00602 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47422 * 179.97438 * 9 8 6 11 11 N 1.46504 * 109.47058 * 179.97438 * 10 9 8 12 12 C 1.36935 * 119.99937 * 270.00095 * 11 10 9 13 13 H 1.08003 * 119.99855 * 144.92770 * 12 11 10 14 14 C 1.38814 * 120.00273 * 324.92932 * 12 11 10 15 15 N 1.31620 * 119.99838 * 337.93463 * 14 12 11 16 16 Si 1.86801 * 120.00091 * 157.93681 * 14 12 11 17 17 H 1.48501 * 109.46754 * 89.99914 * 16 14 12 18 18 H 1.48495 * 109.46949 * 209.99670 * 16 14 12 19 19 H 1.48495 * 109.47225 * 330.00128 * 16 14 12 20 20 C 1.46494 * 119.99631 * 90.00309 * 11 10 9 21 21 C 1.53008 * 117.49603 * 183.23516 * 20 11 10 22 22 C 1.53005 * 117.50060 * 114.58020 * 20 11 10 23 23 C 1.37685 * 109.87321 * 0.26826 * 4 3 2 24 24 C 1.39126 * 133.49984 * 180.51793 * 23 4 3 25 25 C 1.37745 * 119.77976 * 179.57501 * 24 23 4 26 26 C 1.38834 * 120.66513 * 359.66562 * 25 24 23 27 27 C 1.36635 * 120.52634 * 0.02567 * 26 25 24 28 28 C 1.39620 * 119.76582 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47077 * 89.97463 * 1 2 3 30 30 H 1.08995 * 109.46946 * 209.97543 * 1 2 3 31 31 H 1.08998 * 109.46474 * 329.97584 * 1 2 3 32 32 H 1.07995 * 125.03098 * 359.97438 * 3 2 1 33 33 H 1.08992 * 109.47104 * 145.02512 * 5 4 3 34 34 H 1.09002 * 109.46959 * 25.02290 * 5 4 3 35 35 H 0.97000 * 119.99744 * 359.97438 * 8 6 5 36 36 H 1.09002 * 109.46594 * 59.99687 * 9 8 6 37 37 H 1.09002 * 109.46711 * 300.00837 * 9 8 6 38 38 H 1.09004 * 109.46724 * 60.00514 * 10 9 8 39 39 H 1.08991 * 109.47467 * 300.00375 * 10 9 8 40 40 H 0.96995 * 119.99672 * 176.06957 * 15 14 12 41 41 H 1.08998 * 115.55292 * 328.90743 * 20 11 10 42 42 H 1.09004 * 117.49709 * 0.02562 * 21 20 11 43 43 H 1.09001 * 117.49616 * 145.02232 * 21 20 11 44 44 H 1.08992 * 117.50031 * 214.97936 * 22 20 11 45 45 H 1.09007 * 117.49694 * 359.97438 * 22 20 11 46 46 H 1.08000 * 120.11030 * 359.25678 * 24 23 4 47 47 H 1.07997 * 119.67092 * 179.69352 * 25 24 23 48 48 H 1.07998 * 119.73813 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.11344 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3056 1.0790 0.0000 4 7 3.6171 0.6886 -0.0006 5 6 4.7658 1.5979 -0.0002 6 6 5.2358 1.8141 -1.4156 7 8 4.6675 1.2625 -2.3342 8 7 6.2876 2.6203 -1.6607 9 6 6.7449 2.8300 -3.0366 10 6 7.9437 3.7807 -3.0364 11 7 8.4013 3.9899 -4.4123 12 6 9.3492 3.1620 -4.9519 13 1 9.3059 2.9019 -5.9992 14 6 10.3658 2.6570 -4.1528 15 7 10.6930 3.2730 -3.0366 16 14 11.2695 1.1034 -4.6617 17 1 12.4432 1.4645 -5.4968 18 1 11.7285 0.3783 -3.4499 19 1 10.3552 0.2324 -5.4432 20 6 7.8448 5.0848 -5.2107 21 6 8.3072 5.2050 -6.6643 22 6 8.7932 6.2134 -5.6203 23 6 3.6963 -0.6859 -0.0070 24 6 4.7589 -1.5840 -0.0011 25 6 4.5097 -2.9387 -0.0019 26 6 3.2071 -3.4190 -0.0015 27 6 2.1487 -2.5549 -0.0009 28 6 2.3783 -1.1777 -0.0001 29 1 -0.3633 0.0005 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8898 0.5142 32 1 1.9636 2.1034 -0.0004 33 1 5.5734 1.1627 0.5883 34 1 4.4728 2.5532 0.4352 35 1 6.7419 3.0617 -0.9261 36 1 5.9372 3.2645 -3.6256 37 1 7.0384 1.8746 -3.4716 38 1 8.7515 3.3465 -2.4472 39 1 7.6498 4.7359 -2.6016 40 1 11.3635 2.8897 -2.4498 41 1 6.8119 5.3517 -4.9874 42 1 9.0251 4.4691 -7.0265 43 1 7.5784 5.5513 -7.3972 44 1 8.3842 7.2226 -5.6668 45 1 9.8312 6.1414 -5.2953 46 1 5.7758 -1.2202 -0.0012 47 1 5.3358 -3.6342 -0.0024 48 1 3.0289 -4.4842 -0.0017 49 1 1.1381 -2.9358 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317557724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:38:03 Heat of formation + Delta-G solvation = 58.416564 kcal Electronic energy + Delta-G solvation = -28929.289783 eV Core-core repulsion = 25050.743665 eV Total energy + Delta-G solvation = -3878.546118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.39175 -40.57443 -38.87128 -37.89845 -36.36153 -35.03422 -34.69430 -32.78077 -31.49945 -30.77022 -29.89346 -28.82208 -26.63442 -25.82639 -23.77772 -23.40705 -22.93356 -22.50770 -21.67679 -21.45732 -20.44814 -18.73922 -18.02435 -17.93834 -17.53208 -17.29170 -16.78223 -16.50671 -16.32919 -16.13975 -15.75594 -15.58974 -14.95199 -14.86052 -14.55701 -14.52767 -14.47181 -13.95896 -13.80473 -13.62545 -13.59889 -13.31461 -13.03426 -12.95008 -12.93566 -12.64968 -12.54399 -12.47893 -12.22849 -12.17050 -11.94974 -11.71139 -11.69268 -11.41596 -11.13635 -10.92951 -10.52946 -10.40749 -10.12055 -9.09847 -8.60790 -8.45505 -7.88235 -5.51227 0.20946 0.68536 1.38723 1.43649 1.48726 1.52174 1.55469 1.85930 2.26622 2.47149 2.99359 3.10027 3.37137 3.48437 3.68890 3.74496 3.81496 3.91264 4.08121 4.13719 4.26318 4.26959 4.32715 4.36842 4.46225 4.47904 4.48533 4.58052 4.65362 4.76214 4.85792 4.88790 4.91876 4.96968 5.00625 5.01358 5.18480 5.21268 5.28200 5.31912 5.40939 5.51988 5.58569 5.63398 5.69475 5.72781 5.86109 5.91261 6.29888 6.32366 6.39186 6.55760 7.08093 7.18397 7.77274 8.25967 9.03871 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013198 B = 0.002608 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.010954 B =10734.235924 C =12079.947561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.193 4.193 3 C 0.050 3.950 4 N -0.473 5.473 5 C 0.097 3.903 6 C 0.485 3.515 7 O -0.581 6.581 8 N -0.706 5.706 9 C 0.123 3.877 10 C 0.144 3.856 11 N -0.566 5.566 12 C -0.264 4.264 13 H 0.056 0.944 14 C -0.028 4.028 15 N -0.905 5.905 16 Si 0.945 3.055 17 H -0.283 1.283 18 H -0.286 1.286 19 H -0.281 1.281 20 C 0.099 3.901 21 C -0.187 4.187 22 C -0.210 4.210 23 C 0.084 3.916 24 C -0.148 4.148 25 C -0.109 4.109 26 C -0.154 4.154 27 C -0.082 4.082 28 C -0.131 4.131 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.195 0.805 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.416 0.584 36 H 0.045 0.955 37 H 0.026 0.974 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.111 0.889 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.115 0.885 47 H 0.142 0.858 48 H 0.146 0.854 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 -3.499 11.907 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.200 4.200 3 C -0.074 4.074 4 N -0.156 5.156 5 C -0.028 4.028 6 C 0.271 3.729 7 O -0.460 6.460 8 N -0.358 5.358 9 C -0.003 4.003 10 C 0.018 3.982 11 N -0.284 5.284 12 C -0.394 4.394 13 H 0.074 0.926 14 C -0.226 4.226 15 N -0.548 5.548 16 Si 0.773 3.227 17 H -0.210 1.210 18 H -0.212 1.212 19 H -0.207 1.207 20 C -0.009 4.009 21 C -0.225 4.225 22 C -0.250 4.250 23 C -0.022 4.022 24 C -0.168 4.168 25 C -0.128 4.128 26 C -0.173 4.173 27 C -0.101 4.101 28 C -0.136 4.136 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.212 0.788 33 H 0.153 0.847 34 H 0.182 0.818 35 H 0.253 0.747 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.129 0.871 42 H 0.092 0.908 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.133 0.867 47 H 0.159 0.841 48 H 0.164 0.836 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.761 -3.654 11.362 20.576 hybrid contribution 1.471 -0.569 -0.388 1.625 sum -15.289 -4.224 10.974 19.288 Atomic orbital electron populations 1.20097 0.87540 1.03190 1.01845 1.20671 0.96617 0.90392 1.12276 1.22105 0.81189 1.00530 1.03568 1.43501 1.05863 1.03475 1.62714 1.21824 0.90066 0.97934 0.92978 1.21686 0.80147 0.78471 0.92599 1.90750 1.57583 1.49834 1.47841 1.45854 1.31970 1.47982 1.10040 1.21782 0.97243 0.99327 0.81994 1.20973 0.94262 0.95954 0.87049 1.43432 1.43251 1.30185 1.11490 1.19167 1.02761 1.21809 0.95658 0.92615 1.25622 0.96616 1.01691 0.98696 1.70105 1.32712 1.37354 1.14671 0.85650 0.78629 0.81027 0.77383 1.20994 1.21176 1.20660 1.21534 0.95113 0.90852 0.93408 1.23060 1.04162 1.02586 0.92709 1.23267 1.00225 0.95510 1.06037 1.18515 0.96067 0.83654 1.03981 1.20256 0.96695 0.93217 1.06679 1.21116 0.98155 0.93969 0.99571 1.20940 0.92020 1.00697 1.03659 1.20545 1.00181 0.90561 0.98770 1.19540 0.92279 0.94469 1.07262 0.92124 0.91382 0.90125 0.78845 0.84687 0.81846 0.74673 0.93709 0.95537 0.89925 0.93200 0.93681 0.87094 0.90811 0.87251 0.87761 0.92358 0.86668 0.84056 0.83600 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.41 71.24 0.74 -0.41 16 2 C -0.19 -4.58 6.32 -18.62 -0.12 -4.70 16 3 C 0.05 1.12 11.19 83.00 0.93 2.05 16 4 N -0.47 -11.94 2.27 -520.00 -1.18 -13.12 16 5 C 0.10 1.90 6.48 85.63 0.56 2.46 16 6 C 0.49 14.58 7.90 87.66 0.69 15.27 16 7 O -0.58 -24.08 16.42 -3.05 -0.05 -24.13 16 8 N -0.71 -20.62 5.56 -463.07 -2.57 -23.19 16 9 C 0.12 4.79 6.00 86.38 0.52 5.31 16 10 C 0.14 6.08 5.45 86.38 0.47 6.55 16 11 N -0.57 -26.76 2.78 -678.03 -1.88 -28.64 16 12 C -0.26 -13.96 8.63 84.03 0.73 -13.23 16 13 H 0.06 3.02 6.55 -2.91 -0.02 3.00 16 14 C -0.03 -1.50 4.96 84.86 0.42 -1.08 16 15 N -0.90 -49.24 11.33 21.65 0.25 -49.00 16 16 Si 0.94 43.87 29.61 68.60 2.03 45.90 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 C 0.10 3.98 6.56 45.00 0.30 4.28 16 21 C -0.19 -7.01 9.80 30.62 0.30 -6.71 16 22 C -0.21 -7.99 10.36 30.62 0.32 -7.67 16 23 C 0.08 2.44 6.80 39.03 0.27 2.71 16 24 C -0.15 -4.14 10.00 22.37 0.22 -3.92 16 25 C -0.11 -2.64 10.01 22.30 0.22 -2.42 16 26 C -0.15 -3.42 9.97 22.04 0.22 -3.20 16 27 C -0.08 -1.96 10.05 22.23 0.22 -1.74 16 28 C -0.13 -3.64 6.35 -20.20 -0.13 -3.76 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.19 2.90 8.06 -2.91 -0.02 2.87 16 33 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.16 1.71 8.12 -2.39 -0.02 1.69 16 35 H 0.42 9.19 8.47 -92.71 -0.79 8.40 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.08 3.95 5.35 -2.38 -0.01 3.93 16 39 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.25 13.35 8.32 -92.71 -0.77 12.58 16 41 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 42 H 0.07 3.13 6.37 -2.38 -0.02 3.12 16 43 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 45 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 46 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16 47 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 48 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 49 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -74.09 409.48 3.63 -70.45 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.17 Total: 31.96 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 6.88 Total: -10.23 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -5.39 Total: -113.95 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -74.09 3.63 -70.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317557724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.871 kcal (2) G-P(sol) polarization free energy of solvation -74.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds