Wall clock time and date at job start Wed Apr 1 2020 00:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47293 * 0.08698 * 3 2 1 5 5 C 1.34786 * 119.99798 * 95.05676 * 4 3 2 6 6 O 1.21550 * 119.99795 * 184.82032 * 5 4 3 7 7 C 1.47837 * 119.99834 * 4.82571 * 5 4 3 8 8 C 1.39561 * 120.56035 * 311.38176 * 7 5 4 9 9 N 1.31665 * 120.56300 * 180.02562 * 8 7 5 10 10 C 1.31961 * 121.88343 * 0.02562 * 9 8 7 11 11 C 1.38308 * 121.07757 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.34595 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47385 * 270.00058 * 12 11 10 14 14 C 1.38402 * 119.30819 * 0.02562 * 11 10 9 15 15 C 1.46493 * 119.99939 * 275.06372 * 4 3 2 16 16 C 1.53031 * 109.46363 * 60.02639 * 15 4 3 17 17 C 1.53199 * 109.31648 * 178.60074 * 16 15 4 18 18 N 1.46921 * 108.76167 * 54.65435 * 17 16 15 19 19 C 1.36935 * 120.62998 * 126.40668 * 18 17 16 20 20 H 1.07998 * 120.00200 * 324.07635 * 19 18 17 21 21 C 1.38820 * 119.99977 * 144.07942 * 19 18 17 22 22 N 1.31617 * 120.00086 * 1.67143 * 21 19 18 23 23 Si 1.86803 * 120.00089 * 181.67107 * 21 19 18 24 24 H 1.48502 * 109.46881 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47224 * 119.99957 * 23 21 19 26 26 H 1.48499 * 109.47007 * 240.00228 * 23 21 19 27 27 C 1.46928 * 118.74004 * 306.38716 * 18 17 16 28 28 C 1.53041 * 109.45763 * 299.96674 * 15 4 3 29 29 H 4.40648 * 5.51454 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47121 * 240.08722 * 3 2 1 31 31 H 1.09005 * 109.46832 * 120.08528 * 3 2 1 32 32 H 1.07988 * 119.71825 * 0.02562 * 8 7 5 33 33 H 1.07996 * 119.46322 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.46951 * 30.00442 * 12 11 10 35 35 H 1.08999 * 109.46874 * 150.00438 * 12 11 10 36 36 H 1.09002 * 109.47410 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47627 * 300.00584 * 13 12 11 38 38 H 1.09007 * 109.46950 * 60.00037 * 13 12 11 39 39 H 1.07995 * 120.85568 * 180.02562 * 14 11 10 40 40 H 1.09007 * 109.46048 * 180.02562 * 15 4 3 41 41 H 1.09006 * 109.49907 * 298.56684 * 16 15 4 42 42 H 1.09004 * 109.50259 * 58.66420 * 16 15 4 43 43 H 1.08992 * 109.59593 * 294.87094 * 17 16 15 44 44 H 1.08994 * 109.70175 * 174.50259 * 17 16 15 45 45 H 0.96995 * 119.99944 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58398 * 293.82143 * 27 18 17 47 47 H 1.09001 * 109.70447 * 173.47110 * 27 18 17 48 48 H 1.08994 * 109.50242 * 301.33750 * 28 15 4 49 49 H 1.09000 * 109.49729 * 61.44088 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3803 -0.0021 5 6 3.4569 -1.9795 -1.1658 6 8 3.7787 -3.1516 -1.1772 7 6 3.4188 -1.2110 -2.4281 8 6 2.3071 -0.4315 -2.7510 9 7 2.2729 0.2526 -3.8755 10 6 3.2739 0.2313 -4.7351 11 6 4.4110 -0.5166 -4.4884 12 6 5.5446 -0.5285 -5.4812 13 6 5.3306 -1.6621 -6.4863 14 6 4.4968 -1.2538 -3.3202 15 6 3.2739 -2.1101 1.2605 16 6 1.9103 -2.2022 1.9490 17 6 2.0528 -2.9959 3.2515 18 7 3.1016 -2.3742 4.0714 19 6 2.8490 -2.0063 5.3659 20 1 1.8788 -1.6171 5.6371 21 6 3.8400 -2.1335 6.3297 22 7 5.0326 -2.5768 5.9928 23 14 3.4808 -1.6756 8.1048 24 1 2.0760 -1.2085 8.2209 25 1 3.6802 -2.8639 8.9726 26 1 4.4006 -0.5908 8.5319 27 6 4.4269 -2.1552 3.4759 28 6 4.2577 -1.3713 2.1707 29 1 -1.0498 -0.0004 0.0002 30 1 3.0091 0.5133 0.8907 31 1 3.0091 0.5160 -0.8893 32 1 1.4679 -0.3890 -2.0728 33 1 3.2042 0.8071 -5.6460 34 1 5.5751 0.4244 -6.0094 35 1 6.4867 -0.6826 -4.9551 36 1 6.1503 -1.6705 -7.2046 37 1 5.3001 -2.6151 -5.9581 38 1 4.3884 -1.5081 -7.0124 39 1 5.3730 -1.8462 -3.1022 40 1 3.6487 -3.1140 1.0604 41 1 1.5468 -1.1990 2.1719 42 1 1.2037 -2.7077 1.2907 43 1 2.3291 -4.0253 3.0239 44 1 1.1082 -2.9826 3.7951 45 1 5.7248 -2.6660 6.6663 46 1 4.8967 -3.1163 3.2667 47 1 5.0503 -1.5863 4.1658 48 1 5.2222 -1.2854 1.6704 49 1 3.8720 -0.3761 2.3916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324407995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:51 Heat of formation + Delta-G solvation = 79.758877 kcal Electronic energy + Delta-G solvation = -29886.478288 eV Core-core repulsion = 26008.857643 eV Total energy + Delta-G solvation = -3877.620645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.08945 -39.57262 -37.45599 -35.86527 -35.01597 -33.26680 -32.61646 -32.00098 -30.33248 -29.95141 -29.46562 -27.26005 -25.61703 -24.75676 -24.20724 -22.47408 -22.17690 -21.62921 -19.84303 -19.26424 -18.13337 -17.41844 -17.39061 -16.94542 -16.56787 -16.11128 -15.25923 -14.91538 -14.78308 -14.28638 -14.20235 -13.97427 -13.81045 -13.73097 -13.53716 -13.37032 -13.30063 -13.02775 -12.68949 -12.59259 -12.47375 -12.35432 -11.91019 -11.58752 -11.43117 -11.15479 -10.92009 -10.84141 -10.55699 -10.45755 -10.30498 -10.16307 -10.09729 -10.05801 -10.02634 -9.85593 -9.65865 -9.47253 -9.19342 -8.64673 -8.43722 -6.57081 -5.81089 -3.34185 0.51538 0.90820 2.41867 2.59700 2.73052 3.23018 3.35112 3.42829 3.44468 3.47914 4.08626 4.23591 4.35656 4.39008 4.46189 4.59938 4.61500 4.66927 4.94952 5.01945 5.05877 5.15508 5.30069 5.34773 5.40021 5.46210 5.49362 5.52304 5.54652 5.59618 5.76523 5.82486 5.85372 5.86247 5.91313 6.08335 6.17742 6.28883 6.32308 6.50947 6.53957 6.62337 6.78231 6.84064 6.97366 7.33530 7.40436 7.51705 7.59105 7.74240 7.77725 8.08565 8.50406 9.22469 9.80902 10.41539 11.26164 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.002602 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.033823 B =10757.510497 C =11462.845359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.207 4.207 3 C 0.209 3.791 4 N -0.592 5.592 5 C 0.563 3.437 6 O -0.526 6.526 7 C -0.173 4.173 8 C 0.119 3.881 9 N -0.481 5.481 10 C 0.114 3.886 11 C -0.139 4.139 12 C -0.079 4.079 13 C -0.149 4.149 14 C -0.025 4.025 15 C 0.145 3.855 16 C -0.136 4.136 17 C 0.148 3.852 18 N -0.593 5.593 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.173 3.827 28 C -0.148 4.148 29 H 0.219 0.781 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.057 0.943 45 H 0.254 0.746 46 H 0.019 0.981 47 H 0.099 0.901 48 H 0.052 0.948 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.829 7.300 -22.406 23.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.208 4.208 3 C 0.086 3.914 4 N -0.323 5.323 5 C 0.350 3.650 6 O -0.403 6.403 7 C -0.178 4.178 8 C -0.039 4.039 9 N -0.188 5.188 10 C -0.043 4.043 11 C -0.141 4.141 12 C -0.117 4.117 13 C -0.207 4.207 14 C -0.052 4.052 15 C 0.044 3.956 16 C -0.176 4.176 17 C 0.021 3.979 18 N -0.316 5.316 19 C -0.383 4.383 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.216 1.216 27 C 0.047 3.953 28 C -0.188 4.188 29 H 0.235 0.765 30 H 0.128 0.872 31 H 0.116 0.884 32 H 0.183 0.817 33 H 0.175 0.825 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.160 0.840 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.037 0.963 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.222 7.128 -22.453 23.662 hybrid contribution 0.305 -0.243 1.148 1.212 sum -1.917 6.885 -21.305 22.472 Atomic orbital electron populations 1.24947 0.95869 0.98304 1.00317 1.23364 0.94796 1.01885 1.00735 1.18551 0.83973 0.84146 1.04708 1.48226 1.63453 1.13526 1.07097 1.18167 0.77255 0.86551 0.83049 1.90803 1.47865 1.15401 1.86222 1.21053 0.97783 1.01577 0.97430 1.23415 0.96768 0.90064 0.93629 1.67756 1.28297 1.19890 1.02863 1.22861 0.88281 0.95398 0.97764 1.20885 0.98054 0.98795 0.96368 1.20486 0.95622 1.00190 0.95438 1.21778 1.02000 0.98263 0.98627 1.21527 0.97580 0.94736 0.91314 1.21331 0.97120 0.96663 0.80485 1.22385 0.95231 1.01693 0.98273 1.20898 0.93345 0.93712 0.89964 1.44012 1.08159 1.69222 1.10185 1.19178 0.99075 1.36193 0.83870 0.91875 1.25341 0.96772 0.98862 0.98021 1.69903 1.02793 1.49559 1.32543 0.86208 0.77813 0.77558 0.85140 1.20225 1.21503 1.21645 1.20875 0.88034 0.96640 0.89789 1.22644 0.97000 1.00381 0.98780 0.76468 0.87237 0.88354 0.81655 0.82480 0.90396 0.90471 0.91997 0.92325 0.92464 0.84018 0.88393 0.91818 0.93097 0.96253 0.92483 0.93520 0.96305 0.88267 0.92967 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 19.07 29.55 0.56 -1.40 16 2 C -0.21 -2.57 9.12 -37.12 -0.34 -2.91 16 3 C 0.21 2.60 5.05 -6.83 -0.03 2.57 16 4 N -0.59 -8.90 2.40 -170.48 -0.41 -9.30 16 5 C 0.56 8.81 7.26 -12.33 -0.09 8.72 16 6 O -0.53 -10.05 16.37 5.32 0.09 -9.97 16 7 C -0.17 -2.22 4.94 -104.82 -0.52 -2.74 16 8 C 0.12 1.44 8.74 -17.13 -0.15 1.29 16 9 N -0.48 -5.53 10.35 -12.91 -0.13 -5.66 16 10 C 0.11 1.04 10.85 -17.47 -0.19 0.85 16 11 C -0.14 -1.22 5.15 -104.54 -0.54 -1.76 16 12 C -0.08 -0.48 6.08 -27.88 -0.17 -0.65 16 13 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 14 C -0.03 -0.28 9.56 -38.87 -0.37 -0.65 16 15 C 0.15 2.57 2.48 -67.90 -0.17 2.40 16 16 C -0.14 -2.44 4.62 -26.61 -0.12 -2.56 16 17 C 0.15 3.14 6.52 -3.71 -0.02 3.11 16 18 N -0.59 -14.68 2.99 -172.32 -0.52 -15.19 16 19 C -0.25 -6.84 9.55 -15.06 -0.14 -6.98 16 20 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 21 C 0.01 0.24 5.28 -17.43 -0.09 0.15 16 22 N -0.90 -25.78 10.76 55.49 0.60 -25.18 16 23 Si 0.90 21.40 29.55 -169.99 -5.02 16.37 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 C 0.17 4.08 5.23 -3.71 -0.02 4.06 16 28 C -0.15 -2.78 5.29 -26.61 -0.14 -2.92 16 29 H 0.22 1.70 7.80 -54.10 -0.42 1.28 16 30 H 0.11 1.35 6.48 -51.93 -0.34 1.02 16 31 H 0.10 1.07 5.48 -51.93 -0.28 0.78 16 32 H 0.17 1.99 4.64 -52.49 -0.24 1.75 16 33 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 34 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.10 1.96 6.91 -51.92 -0.36 1.60 16 41 H 0.06 1.15 6.76 -51.93 -0.35 0.80 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 2.61 6.05 -51.93 -0.31 2.30 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.06 1.06 6.76 -51.93 -0.35 0.71 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -31.77 392.67 -8.92 -40.69 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.27 Total: 2.25 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -2.18 Total: 0.07 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.46 Total: -55.34 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.77 -8.92 -40.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324407995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.452 kcal (2) G-P(sol) polarization free energy of solvation -31.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds