Wall clock time and date at job start Wed Apr 1 2020 00:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47293 * 0.08698 * 3 2 1 5 5 C 1.34786 * 119.99798 * 95.05676 * 4 3 2 6 6 O 1.21550 * 119.99795 * 184.82032 * 5 4 3 7 7 C 1.47837 * 119.99834 * 4.82571 * 5 4 3 8 8 C 1.39561 * 120.56035 * 311.38176 * 7 5 4 9 9 N 1.31665 * 120.56300 * 180.02562 * 8 7 5 10 10 C 1.31961 * 121.88343 * 0.02562 * 9 8 7 11 11 C 1.38308 * 121.07757 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.34595 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.47385 * 270.00058 * 12 11 10 14 14 C 1.38402 * 119.30819 * 0.02562 * 11 10 9 15 15 C 1.46493 * 119.99939 * 275.06372 * 4 3 2 16 16 C 1.53031 * 109.46363 * 60.02639 * 15 4 3 17 17 C 1.53199 * 109.31648 * 178.60074 * 16 15 4 18 18 N 1.46921 * 108.76167 * 54.65435 * 17 16 15 19 19 C 1.36935 * 120.62998 * 126.40668 * 18 17 16 20 20 H 1.07998 * 120.00200 * 324.07635 * 19 18 17 21 21 C 1.38820 * 119.99977 * 144.07942 * 19 18 17 22 22 N 1.31617 * 120.00086 * 1.67143 * 21 19 18 23 23 Si 1.86803 * 120.00089 * 181.67107 * 21 19 18 24 24 H 1.48502 * 109.46881 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47224 * 119.99957 * 23 21 19 26 26 H 1.48499 * 109.47007 * 240.00228 * 23 21 19 27 27 C 1.46928 * 118.74004 * 306.38716 * 18 17 16 28 28 C 1.53041 * 109.45763 * 299.96674 * 15 4 3 29 29 H 4.40648 * 5.51454 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.47121 * 240.08722 * 3 2 1 31 31 H 1.09005 * 109.46832 * 120.08528 * 3 2 1 32 32 H 1.07988 * 119.71825 * 0.02562 * 8 7 5 33 33 H 1.07996 * 119.46322 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.46951 * 30.00442 * 12 11 10 35 35 H 1.08999 * 109.46874 * 150.00438 * 12 11 10 36 36 H 1.09002 * 109.47410 * 179.97438 * 13 12 11 37 37 H 1.08996 * 109.47627 * 300.00584 * 13 12 11 38 38 H 1.09007 * 109.46950 * 60.00037 * 13 12 11 39 39 H 1.07995 * 120.85568 * 180.02562 * 14 11 10 40 40 H 1.09007 * 109.46048 * 180.02562 * 15 4 3 41 41 H 1.09006 * 109.49907 * 298.56684 * 16 15 4 42 42 H 1.09004 * 109.50259 * 58.66420 * 16 15 4 43 43 H 1.08992 * 109.59593 * 294.87094 * 17 16 15 44 44 H 1.08994 * 109.70175 * 174.50259 * 17 16 15 45 45 H 0.96995 * 119.99944 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.58398 * 293.82143 * 27 18 17 47 47 H 1.09001 * 109.70447 * 173.47110 * 27 18 17 48 48 H 1.08994 * 109.50242 * 301.33750 * 28 15 4 49 49 H 1.09000 * 109.49729 * 61.44088 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3803 -0.0021 5 6 3.4569 -1.9795 -1.1658 6 8 3.7787 -3.1516 -1.1772 7 6 3.4188 -1.2110 -2.4281 8 6 2.3071 -0.4315 -2.7510 9 7 2.2729 0.2526 -3.8755 10 6 3.2739 0.2313 -4.7351 11 6 4.4110 -0.5166 -4.4884 12 6 5.5446 -0.5285 -5.4812 13 6 5.3306 -1.6621 -6.4863 14 6 4.4968 -1.2538 -3.3202 15 6 3.2739 -2.1101 1.2605 16 6 1.9103 -2.2022 1.9490 17 6 2.0528 -2.9959 3.2515 18 7 3.1016 -2.3742 4.0714 19 6 2.8490 -2.0063 5.3659 20 1 1.8788 -1.6171 5.6371 21 6 3.8400 -2.1335 6.3297 22 7 5.0326 -2.5768 5.9928 23 14 3.4808 -1.6756 8.1048 24 1 2.0760 -1.2085 8.2209 25 1 3.6802 -2.8639 8.9726 26 1 4.4006 -0.5908 8.5319 27 6 4.4269 -2.1552 3.4759 28 6 4.2577 -1.3713 2.1707 29 1 -1.0498 -0.0004 0.0002 30 1 3.0091 0.5133 0.8907 31 1 3.0091 0.5160 -0.8893 32 1 1.4679 -0.3890 -2.0728 33 1 3.2042 0.8071 -5.6460 34 1 5.5751 0.4244 -6.0094 35 1 6.4867 -0.6826 -4.9551 36 1 6.1503 -1.6705 -7.2046 37 1 5.3001 -2.6151 -5.9581 38 1 4.3884 -1.5081 -7.0124 39 1 5.3730 -1.8462 -3.1022 40 1 3.6487 -3.1140 1.0604 41 1 1.5468 -1.1990 2.1719 42 1 1.2037 -2.7077 1.2907 43 1 2.3291 -4.0253 3.0239 44 1 1.1082 -2.9826 3.7951 45 1 5.7248 -2.6660 6.6663 46 1 4.8967 -3.1163 3.2667 47 1 5.0503 -1.5863 4.1658 48 1 5.2222 -1.2854 1.6704 49 1 3.8720 -0.3761 2.3916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324407995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:55:50 Heat of formation + Delta-G solvation = 62.498968 kcal Electronic energy + Delta-G solvation = -29887.226734 eV Core-core repulsion = 26008.857643 eV Total energy + Delta-G solvation = -3878.369091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.10471 -40.67647 -39.00735 -37.21803 -35.73725 -34.76045 -33.66365 -33.31724 -31.81030 -31.41301 -30.61091 -28.34656 -27.23417 -25.65746 -25.27682 -23.88509 -23.69037 -22.74412 -20.94995 -20.86269 -19.24683 -18.62634 -18.46508 -18.23884 -17.65654 -17.33689 -16.84937 -16.21435 -15.81190 -15.56575 -15.37161 -15.16336 -14.87597 -14.77002 -14.75606 -14.70182 -14.41466 -14.24088 -14.16518 -14.04444 -13.38492 -13.30883 -13.17763 -12.88913 -12.78005 -12.66328 -12.45775 -12.17767 -12.02672 -11.95026 -11.89026 -11.62510 -11.47866 -11.41725 -11.24309 -11.12567 -10.91000 -10.57406 -10.46045 -10.01307 -9.92134 -8.59029 -7.88034 -5.44924 -0.34559 0.09144 1.36720 1.42976 1.46764 1.48725 1.58708 1.83382 2.20188 2.49314 2.62786 3.19790 3.29314 3.38556 3.50054 3.65524 3.70515 3.74077 3.82976 3.87261 4.01902 4.07138 4.08185 4.27870 4.32786 4.41817 4.45283 4.48547 4.53883 4.62032 4.73659 4.82097 4.83202 4.91145 4.91777 4.97925 5.01349 5.06509 5.11666 5.12457 5.28263 5.31300 5.37056 5.40305 5.49635 5.54381 5.64304 5.74893 6.15402 6.44383 6.63371 6.76488 6.87281 7.16354 7.81580 8.38046 9.17472 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020270 B = 0.002602 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.033823 B =10757.510497 C =11462.845359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.243 4.243 3 C 0.210 3.790 4 N -0.588 5.588 5 C 0.564 3.436 6 O -0.570 6.570 7 C -0.188 4.188 8 C 0.118 3.882 9 N -0.494 5.494 10 C 0.119 3.881 11 C -0.128 4.128 12 C -0.077 4.077 13 C -0.149 4.149 14 C -0.035 4.035 15 C 0.155 3.845 16 C -0.116 4.116 17 C 0.145 3.855 18 N -0.609 5.609 19 C -0.263 4.263 20 H 0.067 0.933 21 C -0.044 4.044 22 N -0.935 5.935 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.293 1.293 26 H -0.289 1.289 27 C 0.181 3.819 28 C -0.130 4.130 29 H 0.248 0.752 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.165 0.835 33 H 0.193 0.807 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.141 0.859 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.062 0.938 45 H 0.251 0.749 46 H -0.010 1.010 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 9.432 -24.496 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.244 4.244 3 C 0.089 3.911 4 N -0.318 5.318 5 C 0.352 3.648 6 O -0.450 6.450 7 C -0.193 4.193 8 C -0.039 4.039 9 N -0.202 5.202 10 C -0.038 4.038 11 C -0.130 4.130 12 C -0.115 4.115 13 C -0.206 4.206 14 C -0.061 4.061 15 C 0.053 3.947 16 C -0.156 4.156 17 C 0.019 3.981 18 N -0.333 5.333 19 C -0.393 4.393 20 H 0.084 0.916 21 C -0.240 4.240 22 N -0.580 5.580 23 Si 0.798 3.202 24 H -0.189 1.189 25 H -0.220 1.220 26 H -0.216 1.216 27 C 0.055 3.945 28 C -0.170 4.170 29 H 0.264 0.736 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.181 0.819 33 H 0.210 0.790 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.008 0.992 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.430 9.292 -24.565 26.487 hybrid contribution 0.653 -0.909 1.679 2.018 sum -2.777 8.384 -22.886 24.531 Atomic orbital electron populations 1.25729 0.96658 0.96399 0.98723 1.23442 0.95121 1.03564 1.02256 1.18653 0.84554 0.82351 1.05537 1.48092 1.63329 1.14441 1.05909 1.18614 0.76030 0.86164 0.83944 1.90774 1.49899 1.17382 1.86947 1.20817 0.99232 1.02713 0.96581 1.23325 0.96370 0.90147 0.94097 1.67811 1.29329 1.20089 1.02966 1.23468 0.87419 0.94765 0.98115 1.21165 0.98799 0.97255 0.95741 1.20578 0.94523 1.01488 0.94897 1.21779 1.02816 0.97333 0.98701 1.21684 0.97200 0.95232 0.91965 1.20927 0.96552 0.95625 0.81635 1.22141 0.95510 1.01389 0.96554 1.20997 0.92485 0.93502 0.91107 1.44234 1.08945 1.69812 1.10285 1.19486 0.99104 1.35792 0.84935 0.91558 1.26092 0.96637 0.99414 1.01864 1.70091 1.03538 1.50982 1.33412 0.85171 0.78075 0.76854 0.80147 1.18916 1.21975 1.21555 1.20604 0.87312 0.95346 0.91279 1.22361 0.98139 0.99928 0.96591 0.73585 0.87199 0.86736 0.81856 0.79046 0.87921 0.90080 0.90506 0.93950 0.92191 0.84102 0.90993 0.91226 0.91886 0.97357 0.91960 0.93960 0.99177 0.91184 0.91869 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 19.07 74.32 1.42 -1.69 16 2 C -0.24 -5.64 9.12 31.13 0.28 -5.36 16 3 C 0.21 5.03 5.05 84.57 0.43 5.46 16 4 N -0.59 -17.62 2.40 -811.56 -1.95 -19.57 16 5 C 0.56 17.88 7.26 86.78 0.63 18.51 16 6 O -0.57 -22.60 16.37 -3.87 -0.06 -22.66 16 7 C -0.19 -4.73 4.94 -19.99 -0.10 -4.83 16 8 C 0.12 2.69 8.74 85.04 0.74 3.44 16 9 N -0.49 -10.25 10.35 -194.77 -2.02 -12.26 16 10 C 0.12 1.80 10.85 84.69 0.92 2.72 16 11 C -0.13 -1.94 5.15 -19.81 -0.10 -2.04 16 12 C -0.08 -0.70 6.08 29.85 0.18 -0.52 16 13 C -0.15 -1.40 9.89 71.98 0.71 -0.68 16 14 C -0.03 -0.73 9.56 22.73 0.22 -0.51 16 15 C 0.16 5.59 2.48 45.02 0.11 5.70 16 16 C -0.12 -4.13 4.62 30.67 0.14 -3.99 16 17 C 0.15 6.24 6.52 86.37 0.56 6.81 16 18 N -0.61 -30.86 2.99 -699.10 -2.09 -32.95 16 19 C -0.26 -14.36 9.55 84.04 0.80 -13.55 16 20 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 21 C -0.04 -2.47 5.28 84.86 0.45 -2.02 16 22 N -0.93 -55.01 10.76 21.65 0.23 -54.78 16 23 Si 0.97 44.45 29.55 68.60 2.03 46.48 16 24 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 C 0.18 8.89 5.23 86.36 0.45 9.34 16 28 C -0.13 -4.98 5.29 30.67 0.16 -4.81 16 29 H 0.25 2.99 7.80 -4.42 -0.03 2.96 16 30 H 0.11 2.59 6.48 -2.39 -0.02 2.57 16 31 H 0.11 2.35 5.48 -2.38 -0.01 2.34 16 32 H 0.16 3.73 4.64 -2.92 -0.01 3.72 16 33 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.10 0.48 8.09 -2.39 -0.02 0.47 16 35 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 40 H 0.07 3.01 6.91 -2.38 -0.02 2.99 16 41 H 0.07 2.42 6.76 -2.38 -0.02 2.41 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 46 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 47 H 0.07 3.86 6.05 -2.39 -0.01 3.84 16 48 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 49 H 0.07 2.46 6.76 -2.39 -0.02 2.44 16 Total: -1.00 -70.88 392.67 5.10 -65.78 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.95 Total: 17.98 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 8.01 Total: 11.98 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -5.82 Total: -119.56 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -70.88 5.10 -65.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324407995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.281 kcal (2) G-P(sol) polarization free energy of solvation -70.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds