Wall clock time and date at job start Wed Apr 1 2020 00:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34242 * 126.50157 * 2 1 4 4 N 1.36835 * 109.93219 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.06584 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47124 * 265.03011 * 5 4 3 7 7 O 1.21277 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99841 * 179.97438 * 8 6 5 10 10 C 1.53001 * 110.91697 * 56.09677 * 9 8 6 11 11 C 1.55157 * 111.00466 * 179.97438 * 9 8 6 12 12 C 1.54325 * 102.94184 * 82.57497 * 11 9 8 13 13 N 1.47022 * 107.26948 * 22.19107 * 12 11 9 14 14 C 1.36945 * 125.64832 * 181.02381 * 13 12 11 15 15 H 1.07997 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 0.02562 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47423 * 108.70390 * 1.29074 * 13 12 11 23 23 C 1.37689 * 109.86782 * 0.26858 * 4 3 2 24 24 C 1.39129 * 133.50084 * 179.73196 * 23 4 3 25 25 C 1.37746 * 119.77475 * 180.02562 * 24 23 4 26 26 C 1.38831 * 120.66851 * 359.97438 * 25 24 23 27 27 C 1.36630 * 120.53000 * 359.62999 * 26 25 24 28 28 C 1.39633 * 119.75685 * 0.60676 * 27 26 25 29 29 H 1.09001 * 109.47004 * 89.96851 * 1 2 3 30 30 H 1.08993 * 109.47029 * 209.97378 * 1 2 3 31 31 H 1.08997 * 109.46604 * 329.97174 * 1 2 3 32 32 H 1.07996 * 125.03560 * 0.07945 * 3 2 1 33 33 H 1.08994 * 109.47420 * 145.02736 * 5 4 3 34 34 H 1.09002 * 109.46828 * 25.02595 * 5 4 3 35 35 H 0.97003 * 120.00176 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.47690 * 183.89832 * 10 9 8 37 37 H 1.08999 * 109.46882 * 303.90238 * 10 9 8 38 38 H 1.09005 * 109.47260 * 63.90076 * 10 9 8 39 39 H 1.09000 * 110.72140 * 324.21327 * 11 9 8 40 40 H 1.08998 * 110.72520 * 200.93646 * 11 9 8 41 41 H 1.09002 * 109.88274 * 262.77538 * 12 11 9 42 42 H 1.09000 * 110.01178 * 141.68100 * 12 11 9 43 43 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.37068 * 94.48354 * 22 13 12 45 45 H 1.09005 * 110.36651 * 216.80519 * 22 13 12 46 46 H 1.07998 * 120.11512 * 0.02643 * 24 23 4 47 47 H 1.07999 * 119.66592 * 180.02562 * 25 24 23 48 48 H 1.08006 * 119.73332 * 180.02562 * 26 25 24 49 49 H 1.07993 * 120.11826 * 179.89233 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6171 0.6889 -0.0006 5 6 4.7657 1.5981 -0.0002 6 6 5.2356 1.8144 -1.4157 7 8 4.6673 1.2629 -2.3342 8 7 6.2881 2.6198 -1.6606 9 6 6.7453 2.8296 -3.0366 10 6 5.6074 3.3505 -3.9168 11 6 7.9635 3.7896 -3.0776 12 6 9.1508 2.8548 -2.7643 13 7 8.7288 1.4864 -3.0976 14 6 9.4886 0.3574 -2.9450 15 1 9.0857 -0.6059 -3.2209 16 6 10.7765 0.4511 -2.4358 17 7 11.2673 1.6251 -2.0992 18 14 11.8127 -1.0891 -2.2271 19 1 13.1391 -0.7216 -1.6697 20 1 11.1274 -2.0247 -1.2997 21 1 11.9955 -1.7453 -3.5466 22 6 7.3545 1.5319 -3.6292 23 6 3.6963 -0.6857 -0.0070 24 6 4.7589 -1.5838 -0.0150 25 6 4.5096 -2.9385 -0.0207 26 6 3.2070 -3.4188 -0.0180 27 6 2.1487 -2.5548 -0.0021 28 6 2.3784 -1.1775 -0.0013 29 1 -0.3633 0.0006 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8897 0.5143 32 1 1.9635 2.1035 0.0012 33 1 5.5733 1.1630 0.5883 34 1 4.4726 2.5534 0.4353 35 1 6.7429 3.0606 -0.9259 36 1 5.9533 3.4323 -4.9472 37 1 4.7660 2.6591 -3.8698 38 1 5.2921 4.3312 -3.5605 39 1 7.8706 4.5634 -2.3156 40 1 8.0724 4.2326 -4.0675 41 1 9.4028 2.9175 -1.7056 42 1 10.0145 3.1337 -3.3679 43 1 12.1672 1.6905 -1.7430 44 1 7.3703 1.5802 -4.7180 45 1 6.7896 0.6614 -3.2954 46 1 5.7758 -1.2200 -0.0167 47 1 5.3358 -3.6340 -0.0264 48 1 3.0289 -4.4841 -0.0222 49 1 1.1382 -2.9357 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324655545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:46 Heat of formation + Delta-G solvation = 57.440620 kcal Electronic energy + Delta-G solvation = -30323.281745 eV Core-core repulsion = 26444.693308 eV Total energy + Delta-G solvation = -3878.588438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.39199 -39.78294 -37.50625 -36.74755 -33.99705 -33.72621 -32.06544 -30.55331 -29.98613 -29.63046 -28.75176 -28.21789 -25.73054 -25.33126 -23.68974 -22.65441 -21.71847 -20.76607 -20.16618 -19.44374 -19.14301 -17.48031 -16.83996 -16.62650 -16.51384 -15.45122 -15.33660 -15.04056 -14.66196 -14.62111 -14.01247 -13.82998 -13.70548 -13.58938 -13.33595 -13.13517 -12.89268 -12.75742 -12.72349 -12.30662 -12.06061 -11.99777 -11.96742 -11.75992 -11.69246 -11.41165 -11.32586 -10.93046 -10.89441 -10.68036 -10.44487 -10.40462 -10.14392 -10.06090 -9.69396 -9.50979 -9.26130 -8.73290 -8.57993 -8.04897 -7.44970 -6.84113 -5.74155 -3.06355 1.25592 1.75153 2.56676 2.76252 2.81525 3.38995 3.43560 3.44752 3.47531 4.06386 4.48174 4.61418 4.70333 4.77949 4.80906 4.97091 5.07157 5.10521 5.23230 5.29297 5.33802 5.41797 5.43514 5.57117 5.64689 5.67819 5.68051 5.78566 5.83779 5.96073 5.97010 5.99909 6.07703 6.10878 6.26966 6.30897 6.34932 6.48133 6.62149 6.62895 6.73861 6.75163 6.85956 6.90398 7.04579 7.29774 7.34633 7.50103 7.51638 7.75159 7.79387 8.22643 8.43384 9.20343 9.80186 10.45976 11.37730 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003642 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.279430 B = 7687.173453 C = 9521.701847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.178 4.178 3 C 0.058 3.942 4 N -0.464 5.464 5 C 0.090 3.910 6 C 0.495 3.505 7 O -0.520 6.520 8 N -0.698 5.698 9 C 0.158 3.842 10 C -0.152 4.152 11 C -0.146 4.146 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.925 5.925 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.285 1.285 22 C 0.134 3.866 23 C 0.114 3.886 24 C -0.120 4.120 25 C -0.101 4.101 26 C -0.149 4.149 27 C -0.076 4.076 28 C -0.104 4.104 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.163 0.837 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.025 0.975 45 H 0.048 0.952 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.118 0.882 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 2.211 6.770 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.185 4.185 3 C -0.066 4.066 4 N -0.146 5.146 5 C -0.036 4.036 6 C 0.278 3.722 7 O -0.395 6.395 8 N -0.349 5.349 9 C 0.071 3.929 10 C -0.211 4.211 11 C -0.185 4.185 12 C 0.052 3.948 13 N -0.329 5.329 14 C -0.352 4.352 15 H 0.093 0.907 16 C -0.204 4.204 17 N -0.573 5.573 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.212 1.212 21 H -0.212 1.212 22 C 0.007 3.993 23 C 0.009 3.991 24 C -0.140 4.140 25 C -0.120 4.120 26 C -0.168 4.168 27 C -0.095 4.095 28 C -0.108 4.108 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.180 0.820 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.136 0.864 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.923 2.000 6.178 19.064 hybrid contribution 1.211 -0.415 0.375 1.334 sum -16.712 1.585 6.553 18.021 Atomic orbital electron populations 1.20039 0.89684 1.01771 1.01456 1.20179 0.94969 0.90841 1.12521 1.21469 0.81628 0.98983 1.04530 1.43269 1.04852 1.03753 1.62775 1.21612 0.89811 0.95752 0.96437 1.20704 0.80932 0.79535 0.91021 1.90711 1.56317 1.47304 1.45181 1.45757 1.31602 1.48157 1.09367 1.21524 0.93088 0.97414 0.80853 1.22030 0.99374 1.00636 0.99036 1.23230 0.95935 0.97739 1.01601 1.21156 0.91578 0.82288 0.99735 1.44438 1.10508 1.03374 1.74583 1.19012 0.94560 0.85647 1.35949 0.90684 1.24752 0.97210 0.96940 1.01496 1.69935 1.16499 1.21469 1.49397 0.86220 0.79575 0.82216 0.77920 1.21609 1.21204 1.21170 1.21892 0.86836 0.94986 0.95549 1.18153 0.95390 0.82506 1.03087 1.20122 0.96924 0.92335 1.04629 1.20794 0.96946 0.94185 1.00122 1.20579 0.92500 0.99241 1.04457 1.20164 0.98738 0.90884 0.99688 1.19030 0.91798 0.93148 1.06820 0.92087 0.92098 0.92197 0.81969 0.86726 0.86626 0.76699 0.91895 0.90446 0.93282 0.91740 0.90856 0.93658 0.93811 0.93795 0.95722 0.93337 0.86292 0.85880 0.86360 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.41 36.01 0.37 -0.30 16 2 C -0.18 -2.27 6.32 -102.71 -0.65 -2.92 16 3 C 0.06 0.72 11.19 -16.73 -0.19 0.53 16 4 N -0.46 -6.38 2.27 -115.71 -0.26 -6.65 16 5 C 0.09 1.05 6.48 -5.19 -0.03 1.02 16 6 C 0.49 7.61 7.28 -10.98 -0.08 7.53 16 7 O -0.52 -10.00 13.25 5.56 0.07 -9.92 16 8 N -0.70 -10.50 5.19 -45.52 -0.24 -10.73 16 9 C 0.16 2.70 0.82 -129.55 -0.11 2.60 16 10 C -0.15 -2.32 8.59 37.16 0.32 -2.00 16 11 C -0.15 -2.50 5.97 -24.90 -0.15 -2.65 16 12 C 0.18 4.07 5.37 -3.06 -0.02 4.05 16 13 N -0.60 -15.15 3.39 -169.93 -0.58 -15.73 16 14 C -0.22 -6.24 10.28 -15.06 -0.15 -6.39 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -26.53 10.31 55.49 0.57 -25.95 16 18 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 C 0.13 2.92 6.18 -2.41 -0.01 2.91 16 23 C 0.11 1.78 6.80 -83.99 -0.57 1.21 16 24 C -0.12 -1.87 10.00 -39.43 -0.39 -2.26 16 25 C -0.10 -1.41 10.01 -39.54 -0.40 -1.81 16 26 C -0.15 -1.90 9.97 -39.94 -0.40 -2.30 16 27 C -0.08 -1.00 10.05 -39.64 -0.40 -1.40 16 28 C -0.10 -1.52 6.35 -105.14 -0.67 -2.19 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.12 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.40 5.14 8.51 -40.82 -0.35 4.79 16 36 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.08 1.32 5.92 -51.93 -0.31 1.01 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 40 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 41 H 0.05 1.13 7.38 -51.93 -0.38 0.74 16 42 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 45 H 0.05 1.15 6.89 -51.93 -0.36 0.80 16 46 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 49 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 396.48 15.07 5.97 5.97 Total: -1.00 -34.13 396.48 -10.75 -44.88 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.65 Total: 5.72 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -3.62 Total: -4.71 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.50 Total: -59.06 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.92 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.13 -10.75 -44.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324655545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.324 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds