Wall clock time and date at job start Wed Apr 1 2020 00:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34242 * 126.50157 * 2 1 4 4 N 1.36835 * 109.93219 * 180.02562 * 3 2 1 5 5 C 1.46494 * 125.06584 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47124 * 265.03011 * 5 4 3 7 7 O 1.21277 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99863 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99841 * 179.97438 * 8 6 5 10 10 C 1.53001 * 110.91697 * 56.09677 * 9 8 6 11 11 C 1.55157 * 111.00466 * 179.97438 * 9 8 6 12 12 C 1.54325 * 102.94184 * 82.57497 * 11 9 8 13 13 N 1.47022 * 107.26948 * 22.19107 * 12 11 9 14 14 C 1.36945 * 125.64832 * 181.02381 * 13 12 11 15 15 H 1.07997 * 119.99756 * 180.02562 * 14 13 12 16 16 C 1.38805 * 119.99878 * 0.02562 * 14 13 12 17 17 N 1.31624 * 120.00257 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99929 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47187 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47141 * 300.00154 * 18 16 14 21 21 H 1.48498 * 109.47018 * 60.00200 * 18 16 14 22 22 C 1.47423 * 108.70390 * 1.29074 * 13 12 11 23 23 C 1.37689 * 109.86782 * 0.26858 * 4 3 2 24 24 C 1.39129 * 133.50084 * 179.73196 * 23 4 3 25 25 C 1.37746 * 119.77475 * 180.02562 * 24 23 4 26 26 C 1.38831 * 120.66851 * 359.97438 * 25 24 23 27 27 C 1.36630 * 120.53000 * 359.62999 * 26 25 24 28 28 C 1.39633 * 119.75685 * 0.60676 * 27 26 25 29 29 H 1.09001 * 109.47004 * 89.96851 * 1 2 3 30 30 H 1.08993 * 109.47029 * 209.97378 * 1 2 3 31 31 H 1.08997 * 109.46604 * 329.97174 * 1 2 3 32 32 H 1.07996 * 125.03560 * 0.07945 * 3 2 1 33 33 H 1.08994 * 109.47420 * 145.02736 * 5 4 3 34 34 H 1.09002 * 109.46828 * 25.02595 * 5 4 3 35 35 H 0.97003 * 120.00176 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.47690 * 183.89832 * 10 9 8 37 37 H 1.08999 * 109.46882 * 303.90238 * 10 9 8 38 38 H 1.09005 * 109.47260 * 63.90076 * 10 9 8 39 39 H 1.09000 * 110.72140 * 324.21327 * 11 9 8 40 40 H 1.08998 * 110.72520 * 200.93646 * 11 9 8 41 41 H 1.09002 * 109.88274 * 262.77538 * 12 11 9 42 42 H 1.09000 * 110.01178 * 141.68100 * 12 11 9 43 43 H 0.97001 * 119.99885 * 179.97438 * 17 16 14 44 44 H 1.09000 * 110.37068 * 94.48354 * 22 13 12 45 45 H 1.09005 * 110.36651 * 216.80519 * 22 13 12 46 46 H 1.07998 * 120.11512 * 0.02643 * 24 23 4 47 47 H 1.07999 * 119.66592 * 180.02562 * 25 24 23 48 48 H 1.08006 * 119.73332 * 180.02562 * 26 25 24 49 49 H 1.07993 * 120.11826 * 179.89233 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3055 1.0791 0.0000 4 7 3.6171 0.6889 -0.0006 5 6 4.7657 1.5981 -0.0002 6 6 5.2356 1.8144 -1.4157 7 8 4.6673 1.2629 -2.3342 8 7 6.2881 2.6198 -1.6606 9 6 6.7453 2.8296 -3.0366 10 6 5.6074 3.3505 -3.9168 11 6 7.9635 3.7896 -3.0776 12 6 9.1508 2.8548 -2.7643 13 7 8.7288 1.4864 -3.0976 14 6 9.4886 0.3574 -2.9450 15 1 9.0857 -0.6059 -3.2209 16 6 10.7765 0.4511 -2.4358 17 7 11.2673 1.6251 -2.0992 18 14 11.8127 -1.0891 -2.2271 19 1 13.1391 -0.7216 -1.6697 20 1 11.1274 -2.0247 -1.2997 21 1 11.9955 -1.7453 -3.5466 22 6 7.3545 1.5319 -3.6292 23 6 3.6963 -0.6857 -0.0070 24 6 4.7589 -1.5838 -0.0150 25 6 4.5096 -2.9385 -0.0207 26 6 3.2070 -3.4188 -0.0180 27 6 2.1487 -2.5548 -0.0021 28 6 2.3784 -1.1775 -0.0013 29 1 -0.3633 0.0006 -1.0277 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3632 0.8897 0.5143 32 1 1.9635 2.1035 0.0012 33 1 5.5733 1.1630 0.5883 34 1 4.4726 2.5534 0.4353 35 1 6.7429 3.0606 -0.9259 36 1 5.9533 3.4323 -4.9472 37 1 4.7660 2.6591 -3.8698 38 1 5.2921 4.3312 -3.5605 39 1 7.8706 4.5634 -2.3156 40 1 8.0724 4.2326 -4.0675 41 1 9.4028 2.9175 -1.7056 42 1 10.0145 3.1337 -3.3679 43 1 12.1672 1.6905 -1.7430 44 1 7.3703 1.5802 -4.7180 45 1 6.7896 0.6614 -3.2954 46 1 5.7758 -1.2200 -0.0167 47 1 5.3358 -3.6340 -0.0264 48 1 3.0289 -4.4841 -0.0222 49 1 1.1382 -2.9357 -0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324655545.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:45 Heat of formation + Delta-G solvation = 37.711424 kcal Electronic energy + Delta-G solvation = -30324.137268 eV Core-core repulsion = 26444.693308 eV Total energy + Delta-G solvation = -3879.443960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.39698 -41.10898 -38.97929 -37.83408 -35.69755 -34.70156 -33.71465 -32.02784 -31.18991 -30.67288 -30.34486 -29.19841 -27.55625 -26.32097 -25.39160 -23.71132 -22.87449 -22.21758 -21.66741 -20.53505 -20.42165 -19.08247 -18.26927 -17.83734 -17.49699 -16.98487 -16.63214 -16.32583 -16.24610 -15.77383 -15.64120 -15.27653 -14.84495 -14.81839 -14.56109 -14.26101 -13.96073 -13.91348 -13.72863 -13.59217 -13.54352 -13.41639 -13.21716 -12.94852 -12.93474 -12.80825 -12.77862 -12.44717 -12.21834 -12.15594 -12.08516 -12.01150 -11.73149 -11.69017 -11.59418 -10.75822 -10.71787 -10.37804 -10.04450 -9.08830 -8.90246 -8.43404 -7.89342 -5.23184 0.21525 0.69101 1.41423 1.43352 1.50015 1.52393 1.61951 1.87408 2.33996 2.45102 2.99739 3.28709 3.51209 3.64030 3.72263 3.74584 3.84230 3.92156 4.01118 4.07854 4.13973 4.16370 4.26544 4.47580 4.48946 4.61006 4.65695 4.66246 4.76264 4.81759 4.86664 4.88799 4.90109 4.97736 4.99814 5.01365 5.05455 5.23563 5.32758 5.33771 5.38697 5.59833 5.60568 5.66439 5.69498 5.75150 5.86498 5.93469 6.16754 6.30399 6.36927 6.61301 7.08648 7.25121 7.73695 8.37728 9.19931 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011453 B = 0.003642 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.279430 B = 7687.173453 C = 9521.701847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.192 4.192 3 C 0.055 3.945 4 N -0.471 5.471 5 C 0.094 3.906 6 C 0.493 3.507 7 O -0.561 6.561 8 N -0.694 5.694 9 C 0.170 3.830 10 C -0.141 4.141 11 C -0.127 4.127 12 C 0.185 3.815 13 N -0.619 5.619 14 C -0.245 4.245 15 H 0.064 0.936 16 C -0.054 4.054 17 N -0.943 5.943 18 Si 0.971 3.029 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.132 3.868 23 C 0.086 3.914 24 C -0.148 4.148 25 C -0.112 4.112 26 C -0.153 4.153 27 C -0.081 4.081 28 C -0.127 4.127 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.198 0.802 33 H 0.118 0.882 34 H 0.164 0.836 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.022 0.978 42 H 0.007 0.993 43 H 0.249 0.751 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.146 0.854 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.971 3.489 7.652 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.199 4.199 3 C -0.069 4.069 4 N -0.153 5.153 5 C -0.031 4.031 6 C 0.279 3.721 7 O -0.440 6.440 8 N -0.345 5.345 9 C 0.083 3.917 10 C -0.200 4.200 11 C -0.165 4.165 12 C 0.060 3.940 13 N -0.346 5.346 14 C -0.374 4.374 15 H 0.082 0.918 16 C -0.248 4.248 17 N -0.592 5.592 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.208 1.208 22 C 0.006 3.994 23 C -0.020 4.020 24 C -0.169 4.169 25 C -0.131 4.131 26 C -0.172 4.172 27 C -0.099 4.099 28 C -0.132 4.132 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.215 0.785 33 H 0.136 0.864 34 H 0.182 0.818 35 H 0.248 0.752 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.040 0.960 42 H 0.025 0.975 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.038 0.962 46 H 0.120 0.880 47 H 0.152 0.848 48 H 0.164 0.836 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.911 3.299 7.076 21.387 hybrid contribution 1.822 -0.879 0.062 2.024 sum -18.089 2.420 7.138 19.596 Atomic orbital electron populations 1.20091 0.87391 1.03166 1.01909 1.20646 0.96610 0.90174 1.12423 1.22114 0.80867 1.00579 1.03362 1.43471 1.05891 1.03277 1.62657 1.21772 0.89768 0.97690 0.93899 1.21346 0.80249 0.78368 0.92179 1.90697 1.57669 1.48690 1.46897 1.45708 1.31555 1.48317 1.08971 1.21329 0.93824 0.94406 0.82179 1.21931 0.97532 1.01507 0.98994 1.23098 0.92616 0.97090 1.03740 1.20965 0.93051 0.82503 0.97487 1.44667 1.11678 1.03630 1.74585 1.19233 0.95434 0.86488 1.36243 0.91775 1.25467 0.98092 0.99738 1.01461 1.70123 1.16405 1.22922 1.49707 0.85280 0.77914 0.79081 0.77839 1.21308 1.20635 1.20822 1.21974 0.85404 0.96745 0.95285 1.18416 0.95834 0.83745 1.03994 1.20185 0.96444 0.93478 1.06755 1.21061 0.98233 0.93865 0.99927 1.20906 0.91784 1.00748 1.03713 1.20547 1.00086 0.90573 0.98683 1.19529 0.92089 0.94494 1.07061 0.91978 0.91511 0.90051 0.78509 0.86384 0.81822 0.75221 0.91322 0.92279 0.90204 0.87972 0.89320 0.96013 0.97461 0.94205 0.96341 0.96230 0.87995 0.84838 0.83591 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.41 71.24 0.74 -0.37 16 2 C -0.19 -4.60 6.32 -18.63 -0.12 -4.71 16 3 C 0.05 1.22 11.19 83.00 0.93 2.15 16 4 N -0.47 -12.54 2.27 -520.00 -1.18 -13.72 16 5 C 0.09 2.07 6.48 85.64 0.56 2.62 16 6 C 0.49 14.81 7.28 87.66 0.64 15.45 16 7 O -0.56 -21.79 13.25 -3.02 -0.04 -21.83 16 8 N -0.69 -19.92 5.19 -416.31 -2.16 -22.08 16 9 C 0.17 5.62 0.82 5.07 0.00 5.62 16 10 C -0.14 -3.98 8.59 71.98 0.62 -3.37 16 11 C -0.13 -4.09 5.97 31.78 0.19 -3.90 16 12 C 0.18 8.58 5.37 86.73 0.47 9.05 16 13 N -0.62 -32.10 3.39 -691.55 -2.35 -34.45 16 14 C -0.24 -14.18 10.28 84.03 0.86 -13.32 16 15 H 0.06 3.74 7.83 -2.91 -0.02 3.71 16 16 C -0.05 -3.08 5.49 84.86 0.47 -2.61 16 17 N -0.94 -55.32 10.31 21.65 0.22 -55.09 16 18 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 C 0.13 5.91 6.18 86.93 0.54 6.45 16 23 C 0.09 2.73 6.80 39.03 0.27 2.99 16 24 C -0.15 -4.88 10.00 22.37 0.22 -4.66 16 25 C -0.11 -3.22 10.01 22.30 0.22 -3.00 16 26 C -0.15 -3.82 9.97 22.04 0.22 -3.60 16 27 C -0.08 -2.05 10.05 22.23 0.22 -1.83 16 28 C -0.13 -3.70 6.35 -20.20 -0.13 -3.82 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 32 H 0.20 2.80 8.06 -2.91 -0.02 2.77 16 33 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.16 1.95 8.12 -2.39 -0.02 1.93 16 35 H 0.41 9.73 8.51 -92.71 -0.79 8.94 16 36 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 37 H 0.06 1.94 5.92 -2.39 -0.01 1.92 16 38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.10 2.58 8.09 -2.39 -0.02 2.56 16 40 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 41 H 0.02 1.10 7.38 -2.39 -0.02 1.08 16 42 H 0.01 0.38 7.50 -2.39 -0.02 0.36 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.02 0.85 7.99 -2.39 -0.02 0.83 16 45 H 0.02 0.97 6.89 -2.38 -0.02 0.96 16 46 H 0.10 3.53 8.06 -2.91 -0.02 3.51 16 47 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 48 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 49 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -78.53 396.48 3.60 -74.93 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.16 Total: 24.71 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.92 Total: -0.87 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -5.46 Total: -125.34 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.04 Total: -21.83 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -78.53 3.60 -74.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324655545.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.642 kcal (2) G-P(sol) polarization free energy of solvation -78.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds