Wall clock time and date at job start Wed Apr 1 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50705 * 109.47228 * 2 1 4 4 C 1.38264 * 119.99921 * 94.17023 * 3 2 1 5 5 C 1.38206 * 120.00120 * 180.23787 * 4 3 2 6 6 C 1.38264 * 119.99607 * 359.80754 * 5 4 3 7 7 C 1.38210 * 120.00402 * 359.97438 * 6 5 4 8 8 C 1.38203 * 120.00224 * 273.96507 * 3 2 1 9 9 C 1.50708 * 119.99985 * 359.97438 * 8 3 2 10 10 H 1.09001 * 109.46922 * 34.40149 * 9 8 3 11 11 C 1.52998 * 109.46917 * 274.40045 * 9 8 3 12 12 N 1.46506 * 109.46857 * 183.93272 * 11 9 8 13 13 C 1.34782 * 119.99852 * 179.72720 * 12 11 9 14 14 O 1.21278 * 119.99647 * 359.97438 * 13 12 11 15 15 C 1.50693 * 119.99955 * 179.97438 * 13 12 11 16 16 C 1.50698 * 109.47419 * 180.02562 * 15 13 12 17 17 C 1.34847 * 125.89068 * 84.99646 * 16 15 13 18 18 C 1.40892 * 107.41405 * 180.02562 * 17 16 15 19 19 C 1.34844 * 107.42036 * 0.02562 * 18 17 16 20 20 N 1.36344 * 125.88695 * 264.69577 * 16 15 13 21 21 H 0.97003 * 125.63926 * 0.02562 * 20 16 15 22 22 N 1.46499 * 109.47005 * 154.40381 * 9 8 3 23 23 C 1.36940 * 119.99906 * 274.99895 * 22 9 8 24 24 H 1.08007 * 119.99669 * 359.97438 * 23 22 9 25 25 C 1.38804 * 120.00114 * 180.02562 * 23 22 9 26 26 N 1.31619 * 120.00298 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00157 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46953 * 359.97438 * 27 25 23 29 29 H 1.48493 * 109.47473 * 119.99844 * 27 25 23 30 30 H 1.48500 * 109.47201 * 240.00013 * 27 25 23 31 31 H 1.09007 * 109.47383 * 294.60381 * 1 2 3 32 32 H 1.08990 * 109.47445 * 54.60774 * 1 2 3 33 33 H 1.09006 * 109.46946 * 174.60716 * 1 2 3 34 34 H 1.08998 * 109.47729 * 240.00311 * 2 1 3 35 35 H 1.09007 * 109.47747 * 120.00028 * 2 1 3 36 36 H 1.08000 * 119.99789 * 0.06439 * 4 3 2 37 37 H 1.08000 * 120.00349 * 179.83505 * 5 4 3 38 38 H 1.08001 * 119.99443 * 180.02562 * 6 5 4 39 39 H 1.07999 * 120.00306 * 179.97438 * 7 6 5 40 40 H 1.08997 * 109.47272 * 63.93561 * 11 9 8 41 41 H 1.08996 * 109.47693 * 303.92986 * 11 9 8 42 42 H 0.96993 * 120.00121 * 359.97438 * 12 11 9 43 43 H 1.08996 * 109.47366 * 300.00269 * 15 13 12 44 44 H 1.09008 * 109.46746 * 59.99930 * 15 13 12 45 45 H 1.07997 * 126.29211 * 0.03093 * 17 16 15 46 46 H 1.08006 * 126.28756 * 179.97438 * 18 17 16 47 47 H 1.08000 * 125.89093 * 180.02562 * 19 18 17 48 48 H 0.96994 * 120.00145 * 95.00446 * 22 9 8 49 49 H 0.97002 * 120.00362 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3448 2.0436 1.1942 5 6 2.8009 3.3482 1.1947 6 6 2.9483 4.0293 0.0005 7 6 2.6402 3.4054 -1.1937 8 6 2.1846 2.1000 -1.1940 9 6 1.8489 1.4195 -2.4961 10 1 1.0048 0.7461 -2.3471 11 6 3.0599 0.6198 -2.9806 12 7 2.7663 0.0350 -4.2914 13 6 3.6958 -0.7118 -4.9197 14 8 4.7755 -0.8993 -4.4001 15 6 3.3936 -1.3138 -6.2677 16 6 4.5886 -2.0963 -6.7478 17 6 4.8731 -3.3766 -6.4341 18 6 6.0730 -3.7148 -7.0906 19 6 6.4763 -2.6283 -7.7799 20 7 5.5655 -1.6338 -7.5789 21 1 5.6077 -0.7431 -7.9609 22 7 1.4976 2.4288 -3.4981 23 6 0.2161 2.9064 -3.5687 24 1 -0.5356 2.5387 -2.8859 25 6 -0.1170 3.8623 -4.5185 26 7 0.7987 4.3093 -5.3516 27 14 -1.8649 4.5144 -4.6143 28 1 -2.6966 3.8555 -3.5754 29 1 -1.8590 5.9818 -4.3872 30 1 -2.4288 4.2236 -5.9570 31 1 -0.3634 0.4279 0.9344 32 1 -0.3634 0.5951 -0.8377 33 1 -0.3633 -1.0232 -0.0966 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2299 1.5114 2.1270 37 1 3.0425 3.8356 2.1277 38 1 3.3051 5.0487 0.0008 39 1 2.7550 3.9375 -2.1264 40 1 3.2784 -0.1760 -2.2685 41 1 3.9227 1.2808 -3.0628 42 1 1.9042 0.1883 -4.7087 43 1 2.5340 -1.9787 -6.1842 44 1 3.1700 -0.5184 -6.9789 45 1 4.2887 -4.0236 -5.7970 46 1 6.5776 -4.6689 -7.0486 47 1 7.3643 -2.5596 -8.3908 48 1 2.1726 2.7586 -4.1116 49 1 0.5661 4.9776 -6.0151 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325367270.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:54:54 Heat of formation + Delta-G solvation = 18.134562 kcal Electronic energy + Delta-G solvation = -29479.144303 eV Core-core repulsion = 25598.851427 eV Total energy + Delta-G solvation = -3880.292876 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01575 -40.89174 -40.13941 -37.39429 -35.26648 -34.94135 -33.62117 -32.72600 -31.75207 -31.13747 -30.25437 -29.12645 -27.23223 -25.58401 -24.69436 -24.10263 -21.94503 -21.69033 -21.40625 -21.13632 -20.81974 -19.35081 -18.48613 -18.01346 -17.34416 -17.11098 -16.71803 -16.28618 -16.18283 -15.69501 -15.40691 -15.05766 -14.78748 -14.58543 -14.50759 -14.41153 -14.36600 -14.11750 -14.09742 -13.87153 -13.75631 -13.26651 -13.08966 -12.97757 -12.90113 -12.82876 -12.61984 -12.46907 -12.32172 -12.11259 -12.02376 -11.81493 -11.60391 -11.42553 -11.05287 -10.86951 -10.01126 -9.69090 -9.55920 -9.37365 -9.01818 -8.88919 -7.91462 -5.20197 0.57048 0.65662 1.33397 1.47139 1.50683 1.57470 1.69408 2.09426 2.41039 2.56526 2.61988 2.99110 3.43350 3.78542 3.80264 3.98400 4.04141 4.07578 4.15789 4.24841 4.28045 4.35631 4.38080 4.43509 4.47946 4.58094 4.58992 4.64035 4.68943 4.78587 4.81590 4.85531 4.89470 5.02554 5.12929 5.18408 5.27702 5.37803 5.38569 5.44992 5.47530 5.49416 5.58298 5.71978 5.80535 5.98103 6.13468 6.26798 6.27171 6.31132 6.62622 6.82404 7.30412 7.37498 8.04753 8.31994 9.30750 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008484 B = 0.003447 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3299.702664 B = 8121.975021 C =10120.965239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.083 4.083 3 C -0.088 4.088 4 C -0.128 4.128 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.106 4.106 8 C -0.103 4.103 9 C 0.206 3.794 10 H 0.076 0.924 11 C 0.133 3.867 12 N -0.710 5.710 13 C 0.510 3.490 14 O -0.580 6.580 15 C -0.066 4.066 16 C 0.020 3.980 17 C -0.206 4.206 18 C -0.226 4.226 19 C -0.012 4.012 20 N -0.553 5.553 21 H 0.421 0.579 22 N -0.718 5.718 23 C -0.223 4.223 24 H 0.071 0.929 25 C -0.060 4.060 26 N -0.962 5.962 27 Si 0.957 3.043 28 H -0.270 1.270 29 H -0.303 1.303 30 H -0.294 1.294 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.041 0.959 42 H 0.413 0.587 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.133 0.867 46 H 0.146 0.854 47 H 0.193 0.807 48 H 0.375 0.625 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.953 -12.235 3.829 13.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.145 4.145 5 C -0.144 4.144 6 C -0.163 4.163 7 C -0.125 4.125 8 C -0.106 4.106 9 C 0.097 3.903 10 H 0.093 0.907 11 C 0.008 3.992 12 N -0.362 5.362 13 C 0.297 3.703 14 O -0.460 6.460 15 C -0.107 4.107 16 C -0.093 4.093 17 C -0.231 4.231 18 C -0.250 4.250 19 C -0.144 4.144 20 N -0.149 5.149 21 H 0.258 0.742 22 N -0.357 5.357 23 C -0.354 4.354 24 H 0.089 0.911 25 C -0.253 4.253 26 N -0.612 5.612 27 Si 0.788 3.212 28 H -0.195 1.195 29 H -0.231 1.231 30 H -0.221 1.221 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.250 0.750 43 H 0.156 0.844 44 H 0.134 0.866 45 H 0.151 0.849 46 H 0.164 0.836 47 H 0.210 0.790 48 H 0.207 0.793 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.504 -12.213 4.157 14.027 hybrid contribution -0.907 1.756 -0.849 2.151 sum 4.598 -10.457 3.309 11.893 Atomic orbital electron populations 1.21713 0.94500 1.02199 1.01615 1.20602 0.96377 0.91650 1.03409 1.20027 0.99242 0.97190 0.92423 1.21265 1.00151 0.95313 0.97820 1.21342 0.99956 0.95116 0.97992 1.21307 1.01759 1.00366 0.92861 1.21016 0.98235 0.95279 0.97930 1.20738 0.98781 0.94944 0.96140 1.19526 0.94821 0.89771 0.86207 0.90675 1.21357 0.96910 0.96194 0.84694 1.45933 1.18728 1.51136 1.20362 1.21046 0.83551 0.78002 0.87677 1.90686 1.25241 1.61606 1.68459 1.20156 0.96678 1.00836 0.92983 1.19746 0.94347 0.94981 1.00247 1.20861 1.00497 0.95712 1.05994 1.21160 0.99143 1.00162 1.04568 1.22309 0.97334 0.88500 1.06243 1.42029 1.19735 1.14215 1.38906 0.74153 1.42465 1.08910 1.46786 1.37541 1.19419 0.87631 1.16401 1.11998 0.91071 1.25265 1.00263 1.00655 0.99078 1.69789 1.33704 1.34516 1.23233 0.85322 0.81440 0.77308 0.77164 1.19468 1.23108 1.22087 0.92312 0.94386 0.90812 0.91300 0.89230 0.83802 0.83921 0.85866 0.88517 0.90643 0.94094 0.75007 0.84417 0.86636 0.84918 0.83592 0.79043 0.79280 0.94263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.67 71.98 0.70 -2.64 16 2 C -0.08 -1.99 5.38 29.85 0.16 -1.83 16 3 C -0.09 -2.62 5.13 -19.86 -0.10 -2.72 16 4 C -0.13 -3.37 9.69 22.27 0.22 -3.15 16 5 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 6 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 7 C -0.11 -4.10 9.32 22.27 0.21 -3.89 16 8 C -0.10 -3.67 5.02 -19.87 -0.10 -3.77 16 9 C 0.21 7.43 1.95 44.25 0.09 7.51 16 10 H 0.08 2.65 5.70 -2.39 -0.01 2.63 16 11 C 0.13 4.51 5.07 86.38 0.44 4.94 16 12 N -0.71 -21.94 5.40 -463.06 -2.50 -24.43 16 13 C 0.51 15.85 7.82 87.65 0.69 16.53 16 14 O -0.58 -22.62 16.03 -3.02 -0.05 -22.67 16 15 C -0.07 -1.54 6.24 29.10 0.18 -1.36 16 16 C 0.02 0.52 5.66 41.08 0.23 0.75 16 17 C -0.21 -5.51 10.77 22.14 0.24 -5.27 16 18 C -0.23 -5.42 10.86 22.14 0.24 -5.18 16 19 C -0.01 -0.26 11.94 83.21 0.99 0.73 16 20 N -0.55 -12.51 6.08 -182.77 -1.11 -13.62 16 21 H 0.42 7.62 8.96 -92.71 -0.83 6.79 16 22 N -0.72 -31.82 3.36 -326.49 -1.10 -32.91 16 23 C -0.22 -11.11 9.92 84.03 0.83 -10.27 16 24 H 0.07 3.52 7.83 -2.91 -0.02 3.49 16 25 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 26 N -0.96 -54.49 13.06 21.65 0.28 -54.20 16 27 Si 0.96 43.80 29.55 68.60 2.03 45.83 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 30 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 31 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.04 1.08 7.05 -2.39 -0.02 1.06 16 33 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 1.70 5.60 -2.39 -0.01 1.68 16 35 H 0.09 1.72 8.06 -2.38 -0.02 1.71 16 36 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 37 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 38 H 0.12 3.60 8.06 -2.91 -0.02 3.57 16 39 H 0.10 4.32 7.27 -2.91 -0.02 4.30 16 40 H 0.08 2.42 6.82 -2.39 -0.02 2.40 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.41 12.41 8.18 -92.71 -0.76 11.65 16 43 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 45 H 0.13 3.31 8.06 -2.91 -0.02 3.29 16 46 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 47 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 48 H 0.37 18.38 7.80 -92.71 -0.72 17.66 16 49 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -68.04 405.44 2.15 -65.89 By element: Atomic # 1 Polarization: 57.47 SS G_CDS: -1.32 Total: 56.15 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 5.92 Total: -20.01 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -4.42 Total: -125.17 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.04 2.15 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325367270.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.021 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds