Wall clock time and date at job start Wed Apr 1 2020 00:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39906 * 109.49274 * 2 1 4 4 C 1.53040 * 109.50049 * 120.05796 * 2 1 3 5 5 C 1.53042 * 109.53983 * 181.31945 * 4 2 1 6 6 C 1.53187 * 109.31107 * 298.63704 * 5 4 2 7 7 N 1.46926 * 108.77881 * 54.63517 * 6 5 4 8 8 C 1.34777 * 120.63346 * 126.36192 * 7 6 5 9 9 O 1.21347 * 120.00047 * 5.05801 * 8 7 6 10 10 C 1.49450 * 120.00032 * 185.05295 * 8 7 6 11 11 O 1.21345 * 120.00111 * 85.36551 * 10 8 7 12 12 N 1.34785 * 119.99805 * 265.36657 * 10 8 7 13 13 C 1.47075 * 120.87705 * 174.96229 * 12 10 8 14 14 C 1.53243 * 108.52060 * 231.20338 * 13 12 10 15 15 N 1.46899 * 109.33861 * 306.17518 * 14 13 12 16 16 C 1.46907 * 111.00050 * 187.25264 * 15 14 13 17 17 C 1.50697 * 109.47043 * 169.99768 * 16 15 14 18 18 H 1.07999 * 120.00371 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99764 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46901 * 60.00604 * 21 19 17 23 23 H 1.48500 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47114 * 300.00262 * 21 19 17 25 25 C 1.46901 * 111.27266 * 63.10342 * 15 14 13 26 26 C 1.47078 * 120.88313 * 354.98146 * 12 10 8 27 27 C 1.46928 * 118.73767 * 306.64691 * 7 6 5 28 28 H 1.08998 * 109.47110 * 299.93404 * 1 2 3 29 29 H 1.08992 * 109.47356 * 59.94316 * 1 2 3 30 30 H 1.09006 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.45562 * 61.29720 * 4 2 1 32 32 H 1.09001 * 109.45319 * 301.33790 * 4 2 1 33 33 H 1.08997 * 109.49329 * 178.68621 * 5 4 2 34 34 H 1.09001 * 109.52094 * 58.60462 * 5 4 2 35 35 H 1.08998 * 109.58763 * 294.84760 * 6 5 4 36 36 H 1.09001 * 109.58889 * 174.42013 * 6 5 4 37 37 H 1.09004 * 109.62545 * 111.49840 * 13 12 10 38 38 H 1.08998 * 109.79326 * 351.00835 * 13 12 10 39 39 H 1.08991 * 109.49348 * 186.21638 * 14 13 12 40 40 H 1.08996 * 109.48991 * 66.13246 * 14 13 12 41 41 H 1.08994 * 109.46910 * 289.99765 * 16 15 14 42 42 H 1.08996 * 109.46872 * 49.99556 * 16 15 14 43 43 H 0.96997 * 120.00279 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.49243 * 56.85225 * 25 15 14 45 45 H 1.09003 * 109.49195 * 176.93692 * 25 15 14 46 46 H 1.08995 * 109.63105 * 248.50898 * 26 12 10 47 47 H 1.09003 * 109.62484 * 8.88932 * 26 12 10 48 48 H 1.08998 * 109.59192 * 173.14373 * 27 7 6 49 49 H 1.09003 * 109.58054 * 293.56483 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9969 1.3189 0.0000 4 6 2.0409 -0.7226 1.2486 5 6 3.5709 -0.6944 1.2663 6 6 4.1054 -1.4265 0.0313 7 7 3.5047 -0.8294 -1.1693 8 6 4.2812 -0.3861 -2.1777 9 8 5.4815 -0.5606 -2.1411 10 6 3.6640 0.3204 -3.3411 11 8 3.4547 1.5143 -3.2845 12 7 3.3397 -0.3687 -4.4532 13 6 2.6322 0.2833 -5.5657 14 6 1.4119 -0.5681 -5.9321 15 7 1.8422 -1.9482 -6.1932 16 6 0.7315 -2.7565 -6.7138 17 6 1.2590 -4.0824 -7.1982 18 1 2.3138 -4.3028 -7.1261 19 6 0.3949 -5.0146 -7.7325 20 7 -0.8897 -4.7463 -7.8197 21 14 1.0488 -6.6578 -8.3336 22 1 1.6975 -7.3746 -7.2063 23 1 -0.0740 -7.4749 -8.8597 24 1 2.0429 -6.4300 -9.4129 25 6 2.4218 -2.5622 -4.9910 26 6 3.6835 -1.7925 -4.5862 27 6 2.0416 -0.7190 -1.2469 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5147 -0.8894 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6968 -1.7568 1.2359 32 1 1.6582 -0.2235 2.1389 33 1 3.9334 -1.1888 2.1675 34 1 3.9164 0.3393 1.2543 35 1 3.8377 -2.4816 0.0876 36 1 5.1897 -1.3243 -0.0133 37 1 3.2963 0.3609 -6.4265 38 1 2.3068 1.2786 -5.2634 39 1 0.9383 -0.1598 -6.8248 40 1 0.7008 -0.5590 -5.1061 41 1 0.0013 -2.9233 -5.9220 42 1 0.2560 -2.2302 -7.5415 43 1 -1.4977 -5.4022 -8.1952 44 1 1.6967 -2.5253 -4.1781 45 1 2.6806 -3.6000 -5.2014 46 1 4.4486 -1.9144 -5.3528 47 1 4.0562 -2.1697 -3.6338 48 1 1.7646 -0.1503 -2.1345 49 1 1.6022 -1.7153 -1.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332103776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:42 Heat of formation + Delta-G solvation = -104.532178 kcal Electronic energy + Delta-G solvation = -32026.703161 eV Core-core repulsion = 27710.321831 eV Total energy + Delta-G solvation = -4316.381330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -47.89545 -41.05119 -39.21159 -37.73786 -37.39094 -34.57201 -33.69026 -32.65886 -32.46944 -31.00520 -28.58612 -27.50076 -26.81253 -25.67300 -24.14853 -23.39049 -22.40818 -21.68073 -20.79755 -19.95348 -18.93646 -17.82899 -17.17935 -16.85823 -16.44297 -15.95604 -15.88493 -15.42256 -15.18353 -15.12045 -14.83501 -14.66513 -14.51904 -14.07436 -13.99849 -13.80214 -13.65767 -13.37787 -12.96680 -12.91991 -12.78348 -12.59635 -12.47962 -12.37417 -12.04508 -11.91841 -11.56028 -11.47514 -11.39364 -11.19828 -11.05851 -11.01954 -10.86028 -10.79778 -10.68303 -10.63345 -9.96961 -9.55454 -9.37947 -9.10009 -8.71567 -8.52750 -7.44763 -6.12823 -4.15202 1.99214 2.02066 2.49978 3.12597 3.26771 3.31913 3.34339 3.92648 3.95642 4.14645 4.21690 4.30446 4.32822 4.55559 4.65898 4.75636 4.88923 4.98499 5.11192 5.15637 5.19757 5.21355 5.22095 5.26253 5.34890 5.38814 5.40092 5.51790 5.54071 5.64038 5.66458 5.69580 5.70495 5.88404 5.88839 6.03165 6.14631 6.30102 6.31731 6.46433 6.78054 7.10528 7.15705 7.20899 7.59065 7.65960 7.80717 7.91437 8.02359 8.38259 8.91654 9.49803 10.97808 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.003147 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.857797 B = 8895.146329 C = 9247.759361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.104 3.896 3 F -0.199 7.199 4 C -0.139 4.139 5 C -0.137 4.137 6 C 0.108 3.892 7 N -0.595 5.595 8 C 0.525 3.475 9 O -0.513 6.513 10 C 0.512 3.488 11 O -0.516 6.516 12 N -0.591 5.591 13 C 0.116 3.884 14 C 0.042 3.958 15 N -0.535 5.535 16 C 0.195 3.805 17 C -0.513 4.513 18 H 0.064 0.936 19 C 0.058 3.942 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.275 1.275 25 C 0.053 3.947 26 C 0.108 3.892 27 C 0.087 3.913 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.027 0.973 41 H -0.008 1.008 42 H 0.033 0.967 43 H 0.263 0.737 44 H 0.025 0.975 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.788 6.598 18.044 19.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.085 3.915 3 F -0.179 7.179 4 C -0.177 4.177 5 C -0.176 4.176 6 C -0.014 4.014 7 N -0.330 5.330 8 C 0.308 3.692 9 O -0.387 6.387 10 C 0.294 3.706 11 O -0.391 6.391 12 N -0.325 5.325 13 C -0.006 4.006 14 C -0.087 4.087 15 N -0.260 5.260 16 C 0.070 3.930 17 C -0.551 4.551 18 H 0.082 0.918 19 C -0.144 4.144 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.076 4.076 26 C -0.015 4.015 27 C -0.037 4.037 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.010 0.990 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.119 0.881 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.113 0.887 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.542 7.112 17.644 19.558 hybrid contribution -0.480 -0.892 0.209 1.034 sum 4.062 6.220 17.853 19.337 Atomic orbital electron populations 1.22338 0.92405 1.04147 1.04193 1.21199 0.95059 0.78883 0.96361 1.92909 1.90223 1.37216 1.97562 1.22148 0.96593 1.01794 0.97179 1.21923 0.95131 1.02460 0.98044 1.21774 1.00170 0.96814 0.82635 1.47985 1.06566 1.59910 1.18529 1.20339 0.87246 0.77846 0.83733 1.90788 1.13837 1.55042 1.78994 1.20112 0.78991 0.87704 0.83761 1.90804 1.52841 1.13598 1.81898 1.48307 1.55840 1.11937 1.16436 1.21912 0.94071 0.96534 0.88072 1.22417 0.94583 0.91433 1.00297 1.62078 1.35266 1.00823 1.27855 1.19723 0.86691 0.92215 0.94336 1.21092 0.94436 0.98995 1.40578 0.91828 1.24978 0.94779 0.98795 0.95861 1.69937 1.02516 1.35629 1.45553 0.86560 0.78356 0.83263 0.79238 1.20248 1.21342 1.20092 1.22320 0.93833 0.99700 0.91742 1.22112 0.99068 0.78500 1.01820 1.22360 0.79917 1.02494 0.98912 0.90758 0.90812 0.90150 0.89571 0.90113 0.89659 0.90632 0.90362 0.88287 0.90195 0.89091 0.89574 0.95444 0.99036 0.94903 0.92761 0.95687 0.88104 0.89692 0.90657 0.88711 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 8.94 37.16 0.33 -0.94 16 2 C 0.10 0.97 1.27 -90.72 -0.12 0.85 16 3 F -0.20 -2.58 16.20 2.25 0.04 -2.54 16 4 C -0.14 -0.96 4.97 -26.69 -0.13 -1.09 16 5 C -0.14 -1.04 5.96 -26.61 -0.16 -1.19 16 6 C 0.11 0.98 6.42 -3.71 -0.02 0.96 16 7 N -0.60 -7.09 2.96 -173.54 -0.51 -7.60 16 8 C 0.53 8.02 5.51 -11.58 -0.06 7.96 16 9 O -0.51 -8.90 16.53 5.50 0.09 -8.81 16 10 C 0.51 8.37 5.48 -11.58 -0.06 8.31 16 11 O -0.52 -9.68 16.58 5.50 0.09 -9.59 16 12 N -0.59 -9.02 3.01 -172.97 -0.52 -9.54 16 13 C 0.12 1.71 6.58 -3.60 -0.02 1.69 16 14 C 0.04 0.69 5.62 -3.70 -0.02 0.66 16 15 N -0.53 -10.37 4.62 -235.77 -1.09 -11.46 16 16 C 0.20 4.67 4.72 -4.97 -0.02 4.65 16 17 C -0.51 -13.39 8.41 -34.44 -0.29 -13.68 16 18 H 0.06 1.63 7.13 -52.49 -0.37 1.26 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 21 Si 0.90 20.60 29.54 -169.99 -5.02 15.57 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 25 C 0.05 0.91 5.46 -3.70 -0.02 0.89 16 26 C 0.11 1.59 6.53 -3.60 -0.02 1.56 16 27 C 0.09 0.90 5.35 -3.94 -0.02 0.88 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.72 7.74 -51.93 -0.40 0.32 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.01 7.04 -51.93 -0.37 0.64 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.30 7.11 -51.93 -0.37 0.93 16 39 H 0.09 1.36 7.99 -51.93 -0.41 0.95 16 40 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 41 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 42 H 0.03 0.85 7.97 -51.93 -0.41 0.44 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.08 1.02 6.37 -51.93 -0.33 0.69 16 48 H 0.09 1.17 6.31 -51.93 -0.33 0.84 16 49 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -32.43 389.15 -9.04 -41.47 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.97 Total: -1.68 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: -0.75 Total: 12.96 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.39 Total: -53.25 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.18 Total: -18.39 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.43 -9.04 -41.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332103776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.060 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds