Wall clock time and date at job start Wed Apr 1 2020 00:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 F 1.39906 * 109.49274 * 2 1 4 4 C 1.53040 * 109.50049 * 120.05796 * 2 1 3 5 5 C 1.53042 * 109.53983 * 181.31945 * 4 2 1 6 6 C 1.53187 * 109.31107 * 298.63704 * 5 4 2 7 7 N 1.46926 * 108.77881 * 54.63517 * 6 5 4 8 8 C 1.34777 * 120.63346 * 126.36192 * 7 6 5 9 9 O 1.21347 * 120.00047 * 5.05801 * 8 7 6 10 10 C 1.49450 * 120.00032 * 185.05295 * 8 7 6 11 11 O 1.21345 * 120.00111 * 85.36551 * 10 8 7 12 12 N 1.34785 * 119.99805 * 265.36657 * 10 8 7 13 13 C 1.47075 * 120.87705 * 174.96229 * 12 10 8 14 14 C 1.53243 * 108.52060 * 231.20338 * 13 12 10 15 15 N 1.46899 * 109.33861 * 306.17518 * 14 13 12 16 16 C 1.46907 * 111.00050 * 187.25264 * 15 14 13 17 17 C 1.50697 * 109.47043 * 169.99768 * 16 15 14 18 18 H 1.07999 * 120.00371 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99764 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00020 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46901 * 60.00604 * 21 19 17 23 23 H 1.48500 * 109.46978 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47114 * 300.00262 * 21 19 17 25 25 C 1.46901 * 111.27266 * 63.10342 * 15 14 13 26 26 C 1.47078 * 120.88313 * 354.98146 * 12 10 8 27 27 C 1.46928 * 118.73767 * 306.64691 * 7 6 5 28 28 H 1.08998 * 109.47110 * 299.93404 * 1 2 3 29 29 H 1.08992 * 109.47356 * 59.94316 * 1 2 3 30 30 H 1.09006 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.45562 * 61.29720 * 4 2 1 32 32 H 1.09001 * 109.45319 * 301.33790 * 4 2 1 33 33 H 1.08997 * 109.49329 * 178.68621 * 5 4 2 34 34 H 1.09001 * 109.52094 * 58.60462 * 5 4 2 35 35 H 1.08998 * 109.58763 * 294.84760 * 6 5 4 36 36 H 1.09001 * 109.58889 * 174.42013 * 6 5 4 37 37 H 1.09004 * 109.62545 * 111.49840 * 13 12 10 38 38 H 1.08998 * 109.79326 * 351.00835 * 13 12 10 39 39 H 1.08991 * 109.49348 * 186.21638 * 14 13 12 40 40 H 1.08996 * 109.48991 * 66.13246 * 14 13 12 41 41 H 1.08994 * 109.46910 * 289.99765 * 16 15 14 42 42 H 1.08996 * 109.46872 * 49.99556 * 16 15 14 43 43 H 0.96997 * 120.00279 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.49243 * 56.85225 * 25 15 14 45 45 H 1.09003 * 109.49195 * 176.93692 * 25 15 14 46 46 H 1.08995 * 109.63105 * 248.50898 * 26 12 10 47 47 H 1.09003 * 109.62484 * 8.88932 * 26 12 10 48 48 H 1.08998 * 109.59192 * 173.14373 * 27 7 6 49 49 H 1.09003 * 109.58054 * 293.56483 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9969 1.3189 0.0000 4 6 2.0409 -0.7226 1.2486 5 6 3.5709 -0.6944 1.2663 6 6 4.1054 -1.4265 0.0313 7 7 3.5047 -0.8294 -1.1693 8 6 4.2812 -0.3861 -2.1777 9 8 5.4815 -0.5606 -2.1411 10 6 3.6640 0.3204 -3.3411 11 8 3.4547 1.5143 -3.2845 12 7 3.3397 -0.3687 -4.4532 13 6 2.6322 0.2833 -5.5657 14 6 1.4119 -0.5681 -5.9321 15 7 1.8422 -1.9482 -6.1932 16 6 0.7315 -2.7565 -6.7138 17 6 1.2590 -4.0824 -7.1982 18 1 2.3138 -4.3028 -7.1261 19 6 0.3949 -5.0146 -7.7325 20 7 -0.8897 -4.7463 -7.8197 21 14 1.0488 -6.6578 -8.3336 22 1 1.6975 -7.3746 -7.2063 23 1 -0.0740 -7.4749 -8.8597 24 1 2.0429 -6.4300 -9.4129 25 6 2.4218 -2.5622 -4.9910 26 6 3.6835 -1.7925 -4.5862 27 6 2.0416 -0.7190 -1.2469 28 1 -0.3633 0.5128 0.8906 29 1 -0.3633 0.5147 -0.8894 30 1 -0.3633 -1.0278 -0.0005 31 1 1.6968 -1.7568 1.2359 32 1 1.6582 -0.2235 2.1389 33 1 3.9334 -1.1888 2.1675 34 1 3.9164 0.3393 1.2543 35 1 3.8377 -2.4816 0.0876 36 1 5.1897 -1.3243 -0.0133 37 1 3.2963 0.3609 -6.4265 38 1 2.3068 1.2786 -5.2634 39 1 0.9383 -0.1598 -6.8248 40 1 0.7008 -0.5590 -5.1061 41 1 0.0013 -2.9233 -5.9220 42 1 0.2560 -2.2302 -7.5415 43 1 -1.4977 -5.4022 -8.1952 44 1 1.6967 -2.5253 -4.1781 45 1 2.6806 -3.6000 -5.2014 46 1 4.4486 -1.9144 -5.3528 47 1 4.0562 -2.1697 -3.6338 48 1 1.7646 -0.1503 -2.1345 49 1 1.6022 -1.7153 -1.2969 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332103776.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:41 Heat of formation + Delta-G solvation = -126.308035 kcal Electronic energy + Delta-G solvation = -32027.647433 eV Core-core repulsion = 27710.321831 eV Total energy + Delta-G solvation = -4317.325602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.75942 -42.23956 -40.38692 -39.06391 -38.45063 -36.13288 -34.53372 -34.40594 -33.31631 -32.32888 -30.20825 -28.27851 -28.00773 -27.01640 -25.28113 -24.74906 -23.67176 -22.91310 -21.89325 -20.99358 -20.00171 -19.04434 -18.47297 -18.28070 -17.96024 -16.91910 -16.72898 -16.65644 -16.36227 -16.17649 -16.05552 -16.02342 -15.75353 -15.41583 -15.37314 -15.18077 -14.61414 -14.41490 -14.22299 -14.02353 -13.65866 -13.59287 -13.47310 -13.37497 -13.08946 -13.05885 -12.96301 -12.75063 -12.61810 -12.52406 -12.42384 -12.34951 -12.17085 -12.14895 -11.78939 -11.74903 -11.46075 -11.29757 -10.80213 -10.58088 -10.05311 -10.00577 -9.06306 -8.17560 -6.27003 0.81174 0.85451 1.29400 1.45787 1.47970 1.55372 2.03098 2.43053 2.84271 3.13382 3.19685 3.20472 3.46988 3.55991 3.62893 3.79213 3.91174 3.92414 4.07295 4.10441 4.14199 4.17515 4.34518 4.36963 4.40470 4.46785 4.61912 4.63500 4.67654 4.72732 4.77670 4.80377 4.89788 4.95443 4.96423 5.06869 5.09982 5.14774 5.21231 5.22574 5.29348 5.31318 5.66099 5.76092 5.89886 6.05523 6.27359 6.48286 6.52820 6.56631 6.88376 7.42923 8.93081 Molecular weight = 341.19amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.003147 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.857797 B = 8895.146329 C = 9247.759361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 F -0.225 7.225 4 C -0.134 4.134 5 C -0.133 4.133 6 C 0.101 3.899 7 N -0.586 5.586 8 C 0.521 3.479 9 O -0.542 6.542 10 C 0.513 3.487 11 O -0.546 6.546 12 N -0.588 5.588 13 C 0.123 3.877 14 C 0.046 3.954 15 N -0.541 5.541 16 C 0.211 3.789 17 C -0.523 4.523 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.058 3.942 26 C 0.119 3.881 27 C 0.081 3.919 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.115 0.885 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.028 0.972 41 H -0.032 1.032 42 H 0.007 0.993 43 H 0.264 0.736 44 H 0.030 0.970 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.071 0.929 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 5.026 19.668 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.076 3.924 3 F -0.206 7.206 4 C -0.171 4.171 5 C -0.171 4.171 6 C -0.019 4.019 7 N -0.319 5.319 8 C 0.303 3.697 9 O -0.419 6.419 10 C 0.296 3.704 11 O -0.424 6.424 12 N -0.322 5.322 13 C 0.001 3.999 14 C -0.083 4.083 15 N -0.267 5.267 16 C 0.085 3.915 17 C -0.561 4.561 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.574 5.574 21 Si 0.789 3.211 22 H -0.190 1.190 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.071 4.071 26 C -0.003 4.003 27 C -0.042 4.042 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.046 0.954 41 H -0.014 1.014 42 H 0.025 0.975 43 H 0.072 0.928 44 H 0.048 0.952 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.907 5.536 19.302 20.671 hybrid contribution -0.638 -0.355 -0.262 0.776 sum 4.269 5.181 19.040 20.189 Atomic orbital electron populations 1.22341 0.90877 1.05523 1.03989 1.21548 0.96290 0.77620 0.96970 1.92861 1.90662 1.39387 1.97685 1.22185 0.95781 1.03092 0.96089 1.21915 0.95790 1.00994 0.98363 1.22082 0.99476 0.98468 0.81915 1.48135 1.07137 1.58341 1.18319 1.20161 0.87068 0.78228 0.84210 1.90772 1.14741 1.56673 1.79685 1.20388 0.78443 0.87415 0.84155 1.90780 1.54268 1.14896 1.82419 1.48350 1.55440 1.12118 1.16282 1.21861 0.93464 0.96335 0.88252 1.22425 0.95401 0.89915 1.00527 1.61966 1.33493 1.01670 1.29523 1.19354 0.87297 0.92051 0.92814 1.21428 0.94615 0.99857 1.40184 0.91502 1.25822 0.94923 1.02439 0.96029 1.70063 1.03785 1.36892 1.46624 0.85517 0.77690 0.78945 0.78960 1.18961 1.21313 1.19680 1.22276 0.94692 0.99298 0.90831 1.22021 0.97768 0.77812 1.02709 1.22567 0.79024 1.03816 0.98800 0.89776 0.92270 0.87956 0.86819 0.88902 0.86655 0.93265 0.87351 0.89627 0.89435 0.88468 0.89274 0.95393 1.01423 0.97475 0.92761 0.95214 0.89225 0.89352 0.89067 0.91066 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 8.94 71.98 0.64 -1.52 16 2 C 0.09 1.60 1.27 -10.86 -0.01 1.58 16 3 F -0.23 -5.83 16.20 44.97 0.73 -5.10 16 4 C -0.13 -1.40 4.97 30.62 0.15 -1.25 16 5 C -0.13 -1.67 5.96 30.67 0.18 -1.49 16 6 C 0.10 1.62 6.42 86.36 0.55 2.17 16 7 N -0.59 -13.22 2.96 -821.33 -2.43 -15.65 16 8 C 0.52 15.70 5.51 87.27 0.48 16.18 16 9 O -0.54 -18.73 16.53 -3.24 -0.05 -18.78 16 10 C 0.51 16.72 5.48 87.27 0.48 17.20 16 11 O -0.55 -20.78 16.58 -3.23 -0.05 -20.83 16 12 N -0.59 -17.61 3.01 -819.52 -2.47 -20.07 16 13 C 0.12 3.56 6.58 86.35 0.57 4.13 16 14 C 0.05 1.50 5.62 86.38 0.49 1.99 16 15 N -0.54 -20.93 4.62 -899.83 -4.16 -25.09 16 16 C 0.21 10.28 4.72 85.55 0.40 10.68 16 17 C -0.52 -27.33 8.41 25.60 0.22 -27.12 16 18 H 0.07 3.39 7.13 -2.91 -0.02 3.37 16 19 C 0.01 0.34 5.46 84.66 0.46 0.80 16 20 N -0.93 -53.33 13.29 21.45 0.28 -53.05 16 21 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 C 0.06 1.92 5.46 86.38 0.47 2.39 16 26 C 0.12 3.37 6.53 86.35 0.56 3.94 16 27 C 0.08 1.57 5.35 86.22 0.46 2.03 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.90 7.74 -2.39 -0.02 0.88 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.65 7.04 -2.39 -0.02 1.63 16 37 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.10 2.75 7.11 -2.39 -0.02 2.74 16 39 H 0.09 2.83 7.99 -2.39 -0.02 2.82 16 40 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 41 H -0.03 -1.69 8.12 -2.39 -0.02 -1.70 16 42 H 0.01 0.38 7.97 -2.39 -0.02 0.36 16 43 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 3.21 6.67 -2.39 -0.02 3.19 16 46 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.09 2.33 6.37 -2.39 -0.02 2.32 16 48 H 0.07 1.74 6.31 -2.39 -0.02 1.73 16 49 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -71.47 389.15 0.93 -70.55 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.94 Total: 12.49 kcal Atomic # 6 Polarization: 25.61 SS G_CDS: 6.11 Total: 31.72 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -8.77 Total: -113.86 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.11 Total: -39.62 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.73 Total: -5.10 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.47 0.93 -70.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332103776.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.760 kcal (2) G-P(sol) polarization free energy of solvation -71.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds