Wall clock time and date at job start Wed Apr 1 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47065 * 2 1 4 4 C 1.52997 * 109.47096 * 240.00045 * 2 1 3 5 5 C 1.52999 * 109.47156 * 119.99849 * 2 1 3 6 6 H 1.08995 * 109.47098 * 179.97438 * 5 2 1 7 7 C 1.53004 * 109.47083 * 299.99894 * 5 2 1 8 8 N 1.46502 * 109.46925 * 175.00128 * 7 5 2 9 9 C 1.36936 * 119.99899 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99864 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99976 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47015 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46893 * 120.00063 * 13 11 9 16 16 H 1.48505 * 109.47184 * 240.00057 * 13 11 9 17 17 N 1.46498 * 109.47257 * 59.99882 * 5 2 1 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 5 2 19 19 O 1.21503 * 119.99892 * 0.28098 * 18 17 5 20 20 C 1.48276 * 120.00096 * 180.27574 * 18 17 5 21 21 C 1.40285 * 119.24142 * 180.02562 * 20 18 17 22 22 C 1.36502 * 119.81826 * 179.97438 * 21 20 18 23 23 C 1.40765 * 118.24605 * 0.02562 * 22 21 20 24 24 C 1.40416 * 121.28755 * 180.02562 * 23 22 21 25 25 C 1.36138 * 119.64910 * 180.02562 * 24 23 22 26 26 C 1.39432 * 120.91393 * 359.95865 * 25 24 23 27 27 C 1.35986 * 121.08775 * 0.02562 * 26 25 24 28 28 C 1.40824 * 119.73457 * 0.02562 * 27 26 25 29 29 N 1.31880 * 119.24121 * 359.73601 * 20 18 17 30 30 H 1.09003 * 109.46926 * 300.00435 * 1 2 3 31 31 H 1.08998 * 109.47115 * 59.99556 * 1 2 3 32 32 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47077 * 299.99927 * 3 2 1 35 35 H 1.08996 * 109.47248 * 60.00097 * 3 2 1 36 36 H 1.09003 * 109.47146 * 299.99852 * 4 2 1 37 37 H 1.08996 * 109.47253 * 59.99946 * 4 2 1 38 38 H 1.08995 * 109.47275 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.47038 * 294.99798 * 7 5 2 40 40 H 1.08999 * 109.47047 * 55.00424 * 7 5 2 41 41 H 0.96997 * 120.00059 * 359.97438 * 8 7 5 42 42 H 0.97004 * 119.99658 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00384 * 265.00562 * 17 5 2 44 44 H 1.07996 * 120.08839 * 359.95653 * 21 20 18 45 45 H 1.07997 * 120.87739 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.17338 * 359.97254 * 24 23 22 47 47 H 1.07996 * 119.54177 * 179.97438 * 25 24 23 48 48 H 1.08007 * 119.45465 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.13818 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5300 0.0001 2.4985 8 7 1.9176 -0.7565 3.6916 9 6 1.5681 -0.3008 4.9348 10 1 1.0071 0.6165 5.0356 11 6 1.9350 -1.0180 6.0653 12 7 2.6182 -2.1362 5.9423 13 14 1.4588 -0.3961 7.7611 14 1 0.6989 0.8727 7.6277 15 1 0.6130 -1.4100 8.4407 16 1 2.6856 -0.1569 8.5631 17 7 1.5517 -2.1024 1.2493 18 6 2.2254 -3.0554 0.5752 19 8 3.2406 -2.7699 -0.0283 20 6 1.7278 -4.4522 0.5702 21 6 2.4419 -5.4315 -0.1362 22 6 1.9948 -6.7211 -0.1483 23 6 0.8159 -7.0241 0.5588 24 6 0.2992 -8.3294 0.5897 25 6 -0.8438 -8.5850 1.2837 26 6 -1.5098 -7.5679 1.9665 27 6 -1.0391 -6.2922 1.9593 28 6 0.1398 -5.9866 1.2522 29 7 0.6274 -4.7464 1.2347 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1299 -0.7216 -1.2490 39 1 1.9647 0.9986 2.5444 40 1 0.4437 0.0783 2.4549 41 1 2.4212 -1.5805 3.6010 42 1 2.8749 -2.6371 6.7323 43 1 0.7412 -2.3303 1.7311 44 1 3.3428 -5.1656 -0.6693 45 1 2.5308 -7.4885 -0.6868 46 1 0.8053 -9.1261 0.0649 47 1 -1.2399 -9.5894 1.3059 48 1 -2.4151 -7.7970 2.5092 49 1 -1.5671 -5.5164 2.4939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486419790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:31 Heat of formation + Delta-G solvation = 25.775356 kcal Electronic energy + Delta-G solvation = -30086.717344 eV Core-core repulsion = 26206.755797 eV Total energy + Delta-G solvation = -3879.961547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.06295 -39.84179 -37.68626 -36.66268 -34.39048 -33.81811 -33.00765 -31.11732 -30.66902 -30.10405 -27.73281 -27.07609 -26.77149 -25.10450 -23.89565 -23.46251 -22.22514 -21.52545 -20.73769 -18.63298 -18.18494 -17.84865 -17.30282 -16.89113 -15.75851 -15.60262 -15.31768 -14.83643 -14.67383 -14.48717 -14.41492 -13.92021 -13.81949 -13.69308 -13.37456 -13.28769 -13.22629 -13.06171 -12.65784 -12.12306 -11.96873 -11.81321 -11.76387 -11.71969 -11.63645 -11.32644 -11.17443 -11.04454 -10.80406 -10.70833 -10.68626 -10.48334 -10.18453 -10.05163 -9.88617 -9.70573 -9.43289 -8.91096 -8.85841 -8.53381 -8.40265 -6.89802 -5.73414 -3.02846 0.13018 0.58678 1.84220 2.44660 3.32185 3.39576 3.44671 3.49944 3.52356 4.05214 4.11017 4.41236 4.59397 4.63013 4.66761 4.80707 4.98634 4.99106 5.02242 5.09865 5.19960 5.23934 5.33565 5.58403 5.61385 5.63634 5.73457 5.80268 5.83425 5.87502 5.92571 5.94390 5.96951 6.08672 6.13718 6.17221 6.18565 6.21116 6.24850 6.34727 6.36416 6.50219 6.51462 6.55829 6.66543 6.68011 6.77964 7.00182 7.61234 7.72141 7.97827 8.43955 8.52098 9.55882 10.12838 10.47908 11.48909 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004145 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.722853 B = 6754.015497 C = 9283.234565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.130 4.130 5 C 0.147 3.853 6 H 0.088 0.912 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.240 4.240 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.905 3.095 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.683 5.683 18 C 0.568 3.432 19 O -0.535 6.535 20 C 0.123 3.877 21 C -0.124 4.124 22 C -0.067 4.067 23 C -0.089 4.089 24 C -0.104 4.104 25 C -0.109 4.109 26 C -0.109 4.109 27 C -0.079 4.079 28 C 0.125 3.875 29 N -0.434 5.434 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.414 0.586 44 H 0.150 0.850 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.131 0.869 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 -9.641 -16.000 19.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.187 4.187 5 C 0.042 3.958 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.371 4.371 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.332 5.332 18 C 0.352 3.648 19 O -0.412 6.412 20 C -0.031 4.031 21 C -0.144 4.144 22 C -0.093 4.093 23 C -0.092 4.092 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.129 4.129 27 C -0.097 4.097 28 C 0.002 3.998 29 N -0.145 5.145 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.251 0.749 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.149 0.851 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.394 -8.674 -15.779 19.107 hybrid contribution 0.021 -0.860 0.891 1.239 sum -6.372 -9.535 -14.887 18.792 Atomic orbital electron populations 1.21919 0.94652 1.01767 1.01609 1.20903 0.95908 0.95651 0.95313 1.21883 1.01191 0.94919 1.01800 1.21893 1.01647 0.99586 0.95602 1.21367 0.99887 0.79936 0.94627 0.89368 1.21095 0.97459 0.94656 0.85363 1.42364 1.66938 1.27761 1.00497 1.19241 1.28824 1.05425 0.83591 0.91129 1.24736 1.00940 0.97355 0.97765 1.69690 1.43343 1.16502 1.28260 0.86144 0.77565 0.77789 0.84843 1.20556 1.21945 1.21930 1.45802 1.29073 1.08021 1.50350 1.17783 0.83699 0.83662 0.79659 1.90757 1.24440 1.81507 1.44491 1.21484 0.91880 0.95213 0.94509 1.21755 1.01039 0.92639 0.98986 1.21422 0.94361 0.96712 0.96818 1.18979 0.96276 0.95010 0.98887 1.20964 0.96596 0.94953 0.99737 1.20976 0.95389 0.99537 0.96837 1.20918 1.00293 0.92552 0.99124 1.20963 0.93994 0.97415 0.97365 1.18873 0.95642 0.88244 0.97073 1.67888 1.11282 1.20280 1.15075 0.91854 0.93209 0.92807 0.92527 0.92893 0.91856 0.93070 0.93937 0.91893 0.94614 0.95326 0.78033 0.93634 0.74888 0.83228 0.83862 0.85204 0.85518 0.85146 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.97 37.16 0.30 -1.58 16 2 C -0.08 -1.08 0.62 -154.51 -0.10 -1.18 16 3 C -0.14 -1.81 8.12 37.16 0.30 -1.51 16 4 C -0.13 -1.86 6.99 37.16 0.26 -1.60 16 5 C 0.15 2.54 1.69 -67.93 -0.11 2.43 16 6 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 7 C 0.14 2.81 5.10 -4.04 -0.02 2.79 16 8 N -0.73 -18.48 5.43 -59.91 -0.33 -18.81 16 9 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 12 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 13 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 17 N -0.68 -11.96 3.63 -54.61 -0.20 -12.15 16 18 C 0.57 10.00 6.16 -12.13 -0.07 9.93 16 19 O -0.54 -10.06 13.39 5.36 0.07 -9.98 16 20 C 0.12 1.99 6.75 -82.95 -0.56 1.43 16 21 C -0.12 -1.66 9.54 -39.44 -0.38 -2.04 16 22 C -0.07 -0.75 9.88 -39.25 -0.39 -1.14 16 23 C -0.09 -1.09 5.75 -106.71 -0.61 -1.71 16 24 C -0.10 -0.98 9.77 -39.52 -0.39 -1.36 16 25 C -0.11 -0.95 9.96 -39.89 -0.40 -1.34 16 26 C -0.11 -1.05 9.94 -39.95 -0.40 -1.45 16 27 C -0.08 -0.98 9.99 -39.41 -0.39 -1.37 16 28 C 0.13 1.81 6.61 -84.85 -0.56 1.25 16 29 N -0.43 -7.09 9.47 -7.54 -0.07 -7.16 16 30 H 0.06 0.86 6.32 -51.93 -0.33 0.53 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.74 7.60 -51.93 -0.39 0.34 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.83 6.54 -51.93 -0.34 0.49 16 36 H 0.05 0.79 5.76 -51.93 -0.30 0.49 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.97 7.52 -51.93 -0.39 0.58 16 39 H 0.04 0.71 6.71 -51.93 -0.35 0.36 16 40 H 0.03 0.56 6.17 -51.93 -0.32 0.24 16 41 H 0.39 10.55 7.33 -40.82 -0.30 10.25 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.41 7.49 7.91 -40.82 -0.32 7.17 16 44 H 0.15 1.84 7.60 -52.49 -0.40 1.44 16 45 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 48 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.74 392.21 -9.87 -42.60 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -7.19 Total: 15.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.77 Total: -5.73 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: 0.13 Total: -65.94 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.98 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.74 -9.87 -42.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486419790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.376 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds