Wall clock time and date at job start Wed Apr 1 2020 01:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47065 * 2 1 4 4 C 1.52997 * 109.47096 * 240.00045 * 2 1 3 5 5 C 1.52999 * 109.47156 * 119.99849 * 2 1 3 6 6 H 1.08995 * 109.47098 * 179.97438 * 5 2 1 7 7 C 1.53004 * 109.47083 * 299.99894 * 5 2 1 8 8 N 1.46502 * 109.46925 * 175.00128 * 7 5 2 9 9 C 1.36936 * 119.99899 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99841 * 359.97438 * 9 8 7 11 11 C 1.38810 * 119.99864 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99976 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47015 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46893 * 120.00063 * 13 11 9 16 16 H 1.48505 * 109.47184 * 240.00057 * 13 11 9 17 17 N 1.46498 * 109.47257 * 59.99882 * 5 2 1 18 18 C 1.34777 * 119.99828 * 84.72116 * 17 5 2 19 19 O 1.21503 * 119.99892 * 0.28098 * 18 17 5 20 20 C 1.48276 * 120.00096 * 180.27574 * 18 17 5 21 21 C 1.40285 * 119.24142 * 180.02562 * 20 18 17 22 22 C 1.36502 * 119.81826 * 179.97438 * 21 20 18 23 23 C 1.40765 * 118.24605 * 0.02562 * 22 21 20 24 24 C 1.40416 * 121.28755 * 180.02562 * 23 22 21 25 25 C 1.36138 * 119.64910 * 180.02562 * 24 23 22 26 26 C 1.39432 * 120.91393 * 359.95865 * 25 24 23 27 27 C 1.35986 * 121.08775 * 0.02562 * 26 25 24 28 28 C 1.40824 * 119.73457 * 0.02562 * 27 26 25 29 29 N 1.31880 * 119.24121 * 359.73601 * 20 18 17 30 30 H 1.09003 * 109.46926 * 300.00435 * 1 2 3 31 31 H 1.08998 * 109.47115 * 59.99556 * 1 2 3 32 32 H 1.08994 * 109.47213 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47062 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47077 * 299.99927 * 3 2 1 35 35 H 1.08996 * 109.47248 * 60.00097 * 3 2 1 36 36 H 1.09003 * 109.47146 * 299.99852 * 4 2 1 37 37 H 1.08996 * 109.47253 * 59.99946 * 4 2 1 38 38 H 1.08995 * 109.47275 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.47038 * 294.99798 * 7 5 2 40 40 H 1.08999 * 109.47047 * 55.00424 * 7 5 2 41 41 H 0.96997 * 120.00059 * 359.97438 * 8 7 5 42 42 H 0.97004 * 119.99658 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00384 * 265.00562 * 17 5 2 44 44 H 1.07996 * 120.08839 * 359.95653 * 21 20 18 45 45 H 1.07997 * 120.87739 * 179.97438 * 22 21 20 46 46 H 1.08000 * 120.17338 * 359.97254 * 24 23 22 47 47 H 1.07996 * 119.54177 * 179.97438 * 25 24 23 48 48 H 1.08007 * 119.45465 * 179.97438 * 26 25 24 49 49 H 1.08000 * 120.13818 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2492 6 1 3.1299 -0.7216 1.2490 7 6 1.5300 0.0001 2.4985 8 7 1.9176 -0.7565 3.6916 9 6 1.5681 -0.3008 4.9348 10 1 1.0071 0.6165 5.0356 11 6 1.9350 -1.0180 6.0653 12 7 2.6182 -2.1362 5.9423 13 14 1.4588 -0.3961 7.7611 14 1 0.6989 0.8727 7.6277 15 1 0.6130 -1.4100 8.4407 16 1 2.6856 -0.1569 8.5631 17 7 1.5517 -2.1024 1.2493 18 6 2.2254 -3.0554 0.5752 19 8 3.2406 -2.7699 -0.0283 20 6 1.7278 -4.4522 0.5702 21 6 2.4419 -5.4315 -0.1362 22 6 1.9948 -6.7211 -0.1483 23 6 0.8159 -7.0241 0.5588 24 6 0.2992 -8.3294 0.5897 25 6 -0.8438 -8.5850 1.2837 26 6 -1.5098 -7.5679 1.9665 27 6 -1.0391 -6.2922 1.9593 28 6 0.1398 -5.9866 1.2522 29 7 0.6274 -4.7464 1.2347 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1299 -0.7216 -1.2490 39 1 1.9647 0.9986 2.5444 40 1 0.4437 0.0783 2.4549 41 1 2.4212 -1.5805 3.6010 42 1 2.8749 -2.6371 6.7323 43 1 0.7412 -2.3303 1.7311 44 1 3.3428 -5.1656 -0.6693 45 1 2.5308 -7.4885 -0.6868 46 1 0.8053 -9.1261 0.0649 47 1 -1.2399 -9.5894 1.3059 48 1 -2.4151 -7.7970 2.5092 49 1 -1.5671 -5.5164 2.4939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486419790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:30 Heat of formation + Delta-G solvation = 5.466476 kcal Electronic energy + Delta-G solvation = -30087.598003 eV Core-core repulsion = 26206.755797 eV Total energy + Delta-G solvation = -3880.842206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 341.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.10113 -41.09149 -38.89581 -37.72179 -36.21035 -34.93505 -34.30747 -33.00154 -31.71036 -30.99938 -29.36974 -28.18257 -27.93427 -26.37035 -25.45600 -24.62314 -23.15531 -23.08038 -21.99035 -19.91491 -19.55440 -18.93525 -18.73660 -18.12356 -17.14727 -17.00831 -16.58526 -16.27724 -15.70247 -15.63566 -15.50468 -15.33931 -15.12838 -14.93079 -14.83818 -14.54037 -14.33272 -14.21044 -14.04160 -13.65941 -13.11436 -13.04831 -12.95225 -12.78536 -12.71841 -12.60922 -12.53433 -12.44697 -12.36955 -12.15965 -12.03618 -11.76974 -11.66947 -11.63798 -11.32875 -11.30787 -10.95050 -10.56003 -9.99337 -9.77653 -9.27441 -9.00663 -7.94638 -5.24525 -0.82364 -0.33719 0.93574 1.41390 1.45982 1.47050 1.57253 2.07195 2.26337 2.54955 2.98531 3.10607 3.39662 3.56489 3.62555 3.68101 3.81581 3.84529 3.91592 4.02854 4.16554 4.23094 4.24536 4.31589 4.37498 4.42998 4.50389 4.61865 4.77645 4.80453 4.83740 4.86577 4.92003 4.94693 5.02999 5.05395 5.06881 5.08150 5.13176 5.22613 5.29483 5.37337 5.41328 5.44365 5.48861 5.49560 5.53823 5.60861 5.87155 6.25310 6.40442 6.72130 7.13972 7.32103 8.05995 8.29778 9.28902 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.007714 B = 0.004145 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3628.722853 B = 6754.015497 C = 9283.234565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.138 4.138 4 C -0.121 4.121 5 C 0.155 3.845 6 H 0.061 0.939 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.241 4.241 10 H 0.081 0.919 11 C -0.075 4.075 12 N -0.971 5.971 13 Si 0.974 3.026 14 H -0.262 1.262 15 H -0.295 1.295 16 H -0.296 1.296 17 N -0.684 5.684 18 C 0.564 3.436 19 O -0.556 6.556 20 C 0.095 3.905 21 C -0.143 4.143 22 C -0.048 4.048 23 C -0.103 4.103 24 C -0.099 4.099 25 C -0.104 4.104 26 C -0.093 4.093 27 C -0.115 4.115 28 C 0.095 3.905 29 N -0.464 5.464 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.040 0.960 41 H 0.371 0.629 42 H 0.248 0.752 43 H 0.410 0.590 44 H 0.154 0.846 45 H 0.188 0.812 46 H 0.168 0.832 47 H 0.167 0.833 48 H 0.159 0.841 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 -11.127 -17.044 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.178 4.178 5 C 0.050 3.950 6 H 0.080 0.920 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.098 0.902 11 C -0.267 4.267 12 N -0.621 5.621 13 Si 0.803 3.197 14 H -0.186 1.186 15 H -0.222 1.222 16 H -0.223 1.223 17 N -0.333 5.333 18 C 0.350 3.650 19 O -0.434 6.434 20 C -0.058 4.058 21 C -0.164 4.164 22 C -0.074 4.074 23 C -0.105 4.105 24 C -0.117 4.117 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.133 4.133 28 C -0.028 4.028 29 N -0.176 5.176 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.203 0.797 42 H 0.057 0.943 43 H 0.246 0.754 44 H 0.172 0.828 45 H 0.205 0.795 46 H 0.186 0.814 47 H 0.185 0.815 48 H 0.176 0.824 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.991 -10.111 -16.854 21.217 hybrid contribution 0.413 -0.524 1.177 1.353 sum -7.578 -10.635 -15.677 20.403 Atomic orbital electron populations 1.21869 0.93475 1.01461 1.02596 1.20870 0.96735 0.96121 0.93452 1.21873 1.00932 0.93803 1.02923 1.21785 1.00553 0.98997 0.96500 1.21249 0.98269 0.80290 0.95212 0.92033 1.21233 0.97943 0.94505 0.84492 1.42559 1.66793 1.27696 1.01572 1.19682 1.27620 1.05280 0.84658 0.90152 1.25579 1.01704 0.97803 1.01661 1.69871 1.45332 1.18112 1.28831 0.85063 0.76979 0.77725 0.79923 1.18647 1.22186 1.22304 1.45790 1.28849 1.08213 1.50436 1.18129 0.83332 0.84502 0.79054 1.90717 1.25205 1.82097 1.45394 1.21375 0.93079 0.94792 0.96561 1.21845 1.01434 0.93371 0.99705 1.21892 0.93624 0.96468 0.95375 1.19328 0.96593 0.95905 0.98684 1.21418 0.96714 0.94262 0.99326 1.21476 0.94674 1.00893 0.95147 1.21338 1.00646 0.91455 0.97831 1.21067 0.94424 0.98845 0.99008 1.19312 0.96758 0.88353 0.98398 1.67772 1.11824 1.22047 1.15970 0.92130 0.90851 0.93807 0.93030 0.90414 0.92041 0.94628 0.91542 0.93471 0.93865 0.94196 0.79715 0.94271 0.75441 0.82826 0.79491 0.81426 0.81530 0.82384 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 7.97 71.98 0.57 -2.95 16 2 C -0.07 -2.01 0.62 -52.18 -0.03 -2.04 16 3 C -0.14 -3.42 8.12 71.98 0.58 -2.84 16 4 C -0.12 -3.49 6.99 71.98 0.50 -2.99 16 5 C 0.15 5.63 1.69 44.99 0.08 5.70 16 6 H 0.06 2.56 7.58 -2.39 -0.02 2.55 16 7 C 0.14 5.87 5.10 86.38 0.44 6.31 16 8 N -0.74 -38.97 5.43 -343.45 -1.87 -40.84 16 9 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 10 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 11 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 12 N -0.97 -61.67 13.06 21.65 0.28 -61.38 16 13 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 16 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 17 N -0.68 -25.76 3.63 -445.00 -1.62 -27.38 16 18 C 0.56 21.50 6.16 86.91 0.54 22.04 16 19 O -0.56 -22.42 13.39 -3.73 -0.05 -22.47 16 20 C 0.09 3.29 6.75 42.31 0.29 3.58 16 21 C -0.14 -3.97 9.54 22.36 0.21 -3.75 16 22 C -0.05 -1.01 9.88 22.48 0.22 -0.79 16 23 C -0.10 -2.39 5.75 -21.22 -0.12 -2.51 16 24 C -0.10 -1.49 9.77 22.31 0.22 -1.28 16 25 C -0.10 -1.39 9.96 22.07 0.22 -1.17 16 26 C -0.09 -1.60 9.94 22.03 0.22 -1.38 16 27 C -0.11 -2.92 9.99 22.38 0.22 -2.69 16 28 C 0.10 2.85 6.61 40.47 0.27 3.12 16 29 N -0.46 -16.34 9.47 -177.76 -1.68 -18.03 16 30 H 0.06 1.59 6.32 -2.39 -0.02 1.57 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.21 7.60 -2.39 -0.02 1.19 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.54 6.54 -2.39 -0.02 1.53 16 36 H 0.03 1.13 5.76 -2.39 -0.01 1.11 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.05 1.49 7.52 -2.39 -0.02 1.48 16 39 H 0.04 1.72 6.71 -2.39 -0.02 1.70 16 40 H 0.04 1.56 6.17 -2.39 -0.01 1.55 16 41 H 0.37 21.44 7.33 -92.71 -0.68 20.76 16 42 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.41 16.08 7.91 -92.71 -0.73 15.35 16 44 H 0.15 3.96 7.60 -2.91 -0.02 3.94 16 45 H 0.19 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 47 H 0.17 0.95 8.06 -2.91 -0.02 0.92 16 48 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 49 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -75.18 392.21 2.40 -72.79 By element: Atomic # 1 Polarization: 49.04 SS G_CDS: -0.43 Total: 48.61 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.73 Total: -0.40 kcal Atomic # 7 Polarization: -142.74 SS G_CDS: -4.88 Total: -147.63 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.05 Total: -22.47 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.18 2.40 -72.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486419790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.254 kcal (2) G-P(sol) polarization free energy of solvation -75.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds